Atopobium Parvulum
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Hplc∓Dad∓ESI-MS/MS Screening of Bioactive Components
Food Chemistry 166 (2015) 179–191 Contents lists available at ScienceDirect Food Chemistry journal homepage: www.elsevier.com/locate/foodchem HPLC–DAD–ESI-MS/MS screening of bioactive components from Rhus coriaria L. (Sumac) fruits ⇑ Ibrahim M. Abu-Reidah a,b,c, Mohammed S. Ali-Shtayeh a, , Rana M. Jamous a, David Arráez-Román b,c, ⇑ Antonio Segura-Carretero b,c, a Biodiversity & Environmental Research Center (BERC), Til, Nablus POB 696, Palestine b Department of Analytical Chemistry, Faculty of Sciences, University of Granada, Avda. Fuentenueva, 18071 Granada, Spain c Functional Food Research and Development Centre (CIDAF), PTS Granada, Avda. del Conocimiento, Edificio Bioregión, 18016 Granada, Spain article info abstract Article history: Rhus coriaria L. (sumac) is an important crop widely used in the Mediterranean basin as a food spice, and Received 25 March 2014 also in folk medicine, due to its health-promoting properties. Phytochemicals present in plant foods are in Received in revised form 29 May 2014 part responsible for these consequent health benefits. Nevertheless, detailed information on these Accepted 3 June 2014 bioactive compounds is still scarce. Therefore, the present work was aimed at investigating the Available online 12 June 2014 phytochemical components of sumac fruit epicarp using HPLC–DAD–ESI-MS/MS in two different ionisation modes. The proposed method provided tentative identification of 211 phenolic and other Keywords: phyto-constituents, most of which have not been described so far in R. coriaria fruits. More than 180 Palestinian sumac phytochemicals (tannins, (iso)flavonoids, terpenoids, etc.) are reported herein in sumac fruits for the first Anacardiaceae Hydrolysable tannins time. -
Ethanolysis Products from Douglas Fir
AN ABSTRACT OF THE THESIS OF Mi p Fj}j,i., for the M S irLCheJni Name) (Degree) (Major) Date thesis is presented August 196rß Title: E a o s Products fr D u las Fir Abstract approved: Redacted for Privacy Majá Professors Douglas fir bark fines which contained 71+.8 percent of Klason lignin and 70.2 percent of one percent sodium hydroxide solubility and decayed Douglas fir wood which contained 53.9 percent of Klason lignin were subjected to ethanolysis. A slight modification of the Hibbert's ethanolysis procedure was used. The monomeric compounds present in the reaction products were then examined. Two fractions of ethyl ether soluble oil were obtained from both bark and wood samples, which were mixtures of monomeric compounds produced by the ethanolysis reaction. One, which was designated "PE" fraction, was obtained by an ether extraction of a tar -like water insoluble substance of the ethanolysis products, and the other one designated "LE" fraction was obtained by the ether extraction of a water solution of the water soluble ethanolysis product. Two dimensional paper partition chromatography of these ether soluble oils demonstrated the presence of 12 compounds in the bark "PE" fraction, four compounds in the bark "LE" fraction and nine compounds in the wood "LE" fraction. The wood "PE" fraction gave the same chromatogram as the wood "LE ". In the wood "LE ", the typical Hibbert's monomers, 1- ethoxy- l- guaiacyl- 2- propanone, 2- ethoxy -l- guaiacyl -l- propanone, guaiacyl- acetone, vanilloyl- acetyle, vanillin, and vanillic acid were identified. Ethyl ferulate was iso- lated from the bark "PE", which was the only C6 -C3, phenyl propane type compound obtained from the ethanolysis of the bark fines sample. -
Molecular Docking Study on Several Benzoic Acid Derivatives Against SARS-Cov-2
molecules Article Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2 Amalia Stefaniu *, Lucia Pirvu * , Bujor Albu and Lucia Pintilie National Institute for Chemical-Pharmaceutical Research and Development, 112 Vitan Av., 031299 Bucharest, Romania; [email protected] (B.A.); [email protected] (L.P.) * Correspondence: [email protected] (A.S.); [email protected] (L.P.) Academic Editors: Giovanni Ribaudo and Laura Orian Received: 15 November 2020; Accepted: 1 December 2020; Published: 10 December 2020 Abstract: Several derivatives of benzoic acid and semisynthetic alkyl gallates were investigated by an in silico approach to evaluate their potential antiviral activity against SARS-CoV-2 main protease. Molecular docking studies were used to predict their binding affinity and interactions with amino acids residues from the active binding site of SARS-CoV-2 main protease, compared to boceprevir. Deep structural insights and quantum chemical reactivity analysis according to Koopmans’ theorem, as a result of density functional theory (DFT) computations, are reported. Additionally, drug-likeness assessment in terms of Lipinski’s and Weber’s rules for pharmaceutical candidates, is provided. The outcomes of docking and key molecular descriptors and properties were forward analyzed by the statistical approach of principal component analysis (PCA) to identify the degree of their correlation. The obtained results suggest two promising candidates for future drug development to fight against the coronavirus infection. Keywords: SARS-CoV-2; benzoic acid derivatives; gallic acid; molecular docking; reactivity parameters 1. Introduction Severe acute respiratory syndrome coronavirus 2 is an international health matter. Previously unheard research efforts to discover specific treatments are in progress worldwide. -
Evolution of 49 Phenolic Compounds in Shortly-Aged Red Wines Made from Cabernet Gernischt (Vitis Vinifera L
Food Sci. Biotechnol. Vol. 18, No. 4, pp. 1001 ~ 1012 (2009) ⓒ The Korean Society of Food Science and Technology Evolution of 49 Phenolic Compounds in Shortly-aged Red Wines Made from Cabernet Gernischt (Vitis vinifera L. cv.) Zheng Li, Qiu-Hong Pan, Zan-Min Jin, Jian-Jun He, Na-Na Liang, and Chang-Qing Duan* Center for Viticulture and Enology, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, PR China Abstract A total of 49 phenolic compounds were identified from the aged red wines made from Cabernet Gernischt (Vitis vinifera L. cv.) grapes, a Chinese characteristic variety, including 13 anthocyanins, 4 pryanocyanins, 4 flavan-3-ol monomers, 6 flavan-3-ol polymers, 7 flavonols, 6 hydroxybenzoic acids, 5 hydroxycinnamic acids, 3 stilbenes, and 1 polymeric pigment. Evolution of these compounds was investigated in wines aged 1 to 13 months. Variance analysis showed that the levels of most phenolics existed significant difference in between wines aged 3 and 9 months. Cluster analysis indicated that 2 groups could be distinguished, one corresponding to wines aged 1 to 3 months and the other to wines aged 4 to 13 months. It was thus suggested that there were 2 key-stages for the development of fine wine quality, at the aged 3 and 9 months, respectively. This work would provide some helpful information for quality control in wine production. Keywords: Cabernet Gernischt, aged wine, phenolic compound, evolution, high performance liquid chromatography coupled with tandem mass spectrometry Introduction 3-ols in red wine and correlation with wine age (12), the evolutions of low molecular weight phenolic compounds Phenolic compounds in red wines mainly contain such as gallic acids and caffeic acids (13,14), as well as the anthocyanins, flavonols, flavan-3-ols, phenolic acids effects of oak barrel compounds and sorption behaviors on (including hydroxybenzoic acids and hydroxycinnamic evolution of phenolic compounds (15), have been reported. -
Molecular Progress in Research on Fruit Astringency
Molecules 2015, 20, 1434-1451; doi:10.3390/molecules20011434 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review Molecular Progress in Research on Fruit Astringency Min He, Henglu Tian, Xiaowen Luo, Xiaohua Qi and Xuehao Chen * School of Horticulture and Plant Protection, Yangzhou University, 48 East Wenhui Road, Yangzhou 225009, Jiangsu, China; E-Mails: [email protected] (M.H.); [email protected] (H.T.); [email protected] (X.L.); [email protected] (X.Q.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +86-514-8797-1894; Fax: +86-514-8734-7537. Academic Editor: Derek J. McPhee Received: 3 November 2014 / Accepted: 8 January 2015 / Published: 15 January 2015 Abstract: Astringency is one of the most important components of fruit oral sensory quality. Astringency mainly comes from tannins and other polyphenolic compounds and causes the drying, roughening and puckering of the mouth epithelia attributed to the interaction between tannins and salivary proteins. There is growing interest in the study of fruit astringency because of the healthy properties of astringent substances found in fruit, including antibacterial, antiviral, anti-inflammatory, antioxidant, anticarcinogenic, antiallergenic, hepatoprotective, vasodilating and antithrombotic activities. This review will focus mainly on the relationship between tannin structure and the astringency sensation as well as the biosynthetic pathways of astringent substances in fruit and their regulatory mechanisms. Keywords: fruit astringency; tannin; biosynthesis pathway; regulation 1. Introduction Recently, the quality of fruits and vegetables has become increasingly important in people’s daily lives. Fruit quality can generally be divided into the following three components: the first is commercial quality, which includes the fruit’s outer appearance, fruit length and diameter; the second is fruit structural quality, for example, in terms of flesh thickness and cavity size; and the third is fruit sensory quality. -
Antioxidant, Cytotoxic, and Antimicrobial Activities of Glycyrrhiza Glabra L., Paeonia Lactiflora Pall., and Eriobotrya Japonica (Thunb.) Lindl
Medicines 2019, 6, 43; doi:10.3390/medicines6020043 S1 of S35 Supplementary Materials: Antioxidant, Cytotoxic, and Antimicrobial Activities of Glycyrrhiza glabra L., Paeonia lactiflora Pall., and Eriobotrya japonica (Thunb.) Lindl. Extracts Jun-Xian Zhou, Markus Santhosh Braun, Pille Wetterauer, Bernhard Wetterauer and Michael Wink T r o lo x G a llic a c id F e S O 0 .6 4 1 .5 2 .0 e e c c 0 .4 1 .5 1 .0 e n n c a a n b b a r r b o o r 1 .0 s s o b b 0 .2 s 0 .5 b A A A 0 .5 0 .0 0 .0 0 .0 0 5 1 0 1 5 2 0 2 5 0 5 0 1 0 0 1 5 0 2 0 0 0 1 0 2 0 3 0 4 0 5 0 C o n c e n tr a tio n ( M ) C o n c e n tr a tio n ( M ) C o n c e n tr a tio n ( g /m l) Figure S1. The standard curves in the TEAC, FRAP and Folin-Ciocateu assays shown as absorption vs. concentration. Results are expressed as the mean ± SD from at least three independent experiments. Table S1. Secondary metabolites in Glycyrrhiza glabra. Part Class Plant Secondary Metabolites References Root Glycyrrhizic acid 1-6 Glabric acid 7 Liquoric acid 8 Betulinic acid 9 18α-Glycyrrhetinic acid 2,3,5,10-12 Triterpenes 18β-Glycyrrhetinic acid Ammonium glycyrrhinate 10 Isoglabrolide 13 21α-Hydroxyisoglabrolide 13 Glabrolide 13 11-Deoxyglabrolide 13 Deoxyglabrolide 13 Glycyrrhetol 13 24-Hydroxyliquiritic acid 13 Liquiridiolic acid 13 28-Hydroxygiycyrrhetinic acid 13 18α-Hydroxyglycyrrhetinic acid 13 Olean-11,13(18)-dien-3β-ol-30-oic acid and 3β-acetoxy-30-methyl ester 13 Liquiritic acid 13 Olean-12-en-3β-ol-30-oic acid 13 24-Hydroxyglycyrrhetinic acid 13 11-Deoxyglycyrrhetinic acid 5,13 24-Hydroxy-11-deoxyglycyirhetinic -
Optimizing the Extraction of Phenolic Antioxidant Compounds from Peanut Skins
Optimizing the Extraction of Phenolic Antioxidant Compounds from Peanut Skins Tameshia S. Ballard Dissertation submitted to the Faculty of Virginia Polytechnic Institute and State University in partial fulfillment of the requirements for degree of Doctor of Philosophy in Biological Systems Engineering Parameswarakumar Mallikarjunan, Co-Chair Sean O’Keefe, Co-Chair Mike Zhang Craig Thatcher July 8, 2008 Blacksburg, VA Key Words: polyphenols, antioxidants, resveratrol, peanut skins, solid-liquid extraction, microwave-assisted extraction, response surface methodology, peanut butter, human brain microvascular endothelial cells © 2008 Tameshia S. Ballard Optimizing the Extraction of Phenolic Antioxidant Compounds from Peanut Skins Tameshia S. Ballard ABSTRACT Peanut skins are a low-value byproduct of peanut blanching and roasting operations. They have been shown to contain significant levels of phenolic compounds with demonstrated antioxidant properties. In this study, the effects of two types of extraction methods: solid-liquid extraction (SLE) and microwave-assisted extraction (MAE) on the recovery of phenolic compounds from peanut skins were investigated. Response surface methodology was used to optimize the extraction conditions based on total phenolic content (TPC), ORAC (oxygen radical absorbance capacity) activity and trans-resveratrol concentration. The protective effect of peanut skin extracts (PSE) against hydrogen peroxide (H2O2)-induced oxidative stress in human brain microvascular endothelial cells (HBMEC) and the effect of PSE on lipid oxidation in commercial peanut butter were evaluated. In the SLE method, the extraction parameters solvent type, solvent concentration, temperature and time were investigated. EtOH was found to be the most efficient solvent for the extraction of phenolics followed by MeOH, water and EA. Despite EtOH extracts having a higher TPC, samples extracted with MeOH demonstrated slightly higher ORAC activity. -
Recent Advances in Nanomaterials for Dermal and Transdermal Applications
colloids and interfaces Review Recent Advances in Nanomaterials for Dermal and Transdermal Applications Amani Zoabi, Elka Touitou * and Katherine Margulis * The Institute for Drug Research, The School of Pharmacy, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 9112192, Israel; [email protected] * Correspondence: to: [email protected] (E.T.); [email protected] (K.M.) Abstract: The stratum corneum, the most superficial layer of the skin, protects the body against environmental hazards and presents a highly selective barrier for the passage of drugs and cosmetic products deeper into the skin and across the skin. Nanomaterials can effectively increase the permeation of active molecules across the stratum corneum and enable their penetration into deeper skin layers, often by interacting with the skin and creating the distinct sites with elevated local concentration, acting as reservoirs. The flux of the molecules from these reservoirs can be either limited to the underlying skin layers (for topical drug and cosmeceutical delivery) or extended across all the sublayers of the epidermis to the blood vessels of the dermis (for transdermal delivery). The type of the nanocarrier and the physicochemical nature of the active substance are among the factors that determine the final skin permeation pattern and the stability of the penetrant in the cutaneous environment. The most widely employed types of nanomaterials for dermal and transdermal applications include solid lipid nanoparticles, nanovesicular carriers, microemulsions, nanoemulsions, and polymeric nanoparticles. The recent advances in the area of nanomaterial- assisted dermal and transdermal delivery are highlighted in this review. Citation: Zoabi, A.; Touitou, E.; Keywords: dermal delivery; transdermal delivery; permeation; cosmeceuticals; skin care; lipid Margulis, K. -
Rhamnus Prinoides Plant Extracts and Pure Compounds Inhibit Microbial Growth and Biofilm Ormationf
Georgia State University ScholarWorks @ Georgia State University Biology Dissertations Department of Biology 12-15-2020 Rhamnus prinoides Plant Extracts and Pure Compounds Inhibit Microbial Growth and Biofilm ormationF Mariya Campbell Follow this and additional works at: https://scholarworks.gsu.edu/biology_diss Recommended Citation Campbell, Mariya, "Rhamnus prinoides Plant Extracts and Pure Compounds Inhibit Microbial Growth and Biofilm ormation.F " Dissertation, Georgia State University, 2020. https://scholarworks.gsu.edu/biology_diss/246 This Dissertation is brought to you for free and open access by the Department of Biology at ScholarWorks @ Georgia State University. It has been accepted for inclusion in Biology Dissertations by an authorized administrator of ScholarWorks @ Georgia State University. For more information, please contact [email protected]. RHAMNUS PRINOIDES PLANT EXTRACTS AND PURE COMPOUNDS INHIBIT MICROBIAL GROWTH AND BIOFILM FORMATION by MARIYA M. CAMPBELL Under the Direction of Eric Gilbert, PhD ABSTRACT The increased prevalence of antibiotic resistance threatens to render all of our current antibiotics ineffective in the fight against microbial infections. Biofilms, or microbial communities attached to biotic or abiotic surfaces, have enhanced antibiotic resistance and are associated with chronic infections including periodontitis, endocarditis and osteomyelitis. The “biofilm lifestyle” confers survival advantages against both physical and chemical threats, making biofilm eradication a major challenge. A need exists for anti-biofilm treatments that are “anti-pathogenic”, meaning they act against microbial virulence in a non-biocidal way, leading to reduced drug resistance. A potential source of anti-biofilm, anti-pathogenic agents is plants used in traditional medicine for treating biofilm-associated conditions. My dissertation describes the anti-pathogenic, anti-biofilm activity of Rhamnus prinoides (gesho) extracts and specific chemicals derived from them. -
ABSTRACT SIMPSON, JOY ANNA. Antioxidant Properties of Peanut
ABSTRACT SIMPSON, JOY ANNA. Antioxidant Properties of Peanut Plant Leaves and Roots and Contribution of Specific Phenolic Compounds to Antioxidant Capacity. (Under the direction of Dr. T. H. Sanders). The peanut seeds represent less than 40 % of the total biomass of the peanut plant. Currently, peanut plants are left in the field after harvest or baled for animal feed. The research presented here was the second step in identifying bioactive compounds from peanut plants that may be the source for value added products for the peanut industry. The objective of this work was to determine the antioxidant capacity and total phenolic content for peanut leaves and roots, and to identify and quantify specific phenolic compounds contributing to the total antioxidant activity. Peanut leaves and roots were collected from a North Carolina (NC) research farm. Additional roots were collected from a Texas (TX) farm. Plant parts were freeze dried and extracted with methanol and aqueous methanol. Antioxidant activity of the extracts was tested using ORAC and DPPH assays. Total phenolics were measured using the Folin-Ciocalteau method. Chlorophyll was tested with the ORAC assay to dispel concern for potential chlorophyll antioxidant activity. Thin Layer Chromatography (TLC) and High Performance Liquid Chromatography (HPLC) were used for separation and preliminary identification of compounds contributing to the total antioxidant capacity of the peanut leaves and roots. HPLC coupled with Mass Spectrometry (MS) was utilized for identification and quantification of individual phenolic compounds in the peanut plant parts. The identified phenolic compounds were assayed individually and as a quantitative mixture with both antioxidant assays to determine the contribution of the individual compounds to the total antioxidant activity previously determined for peanut plant extracts. -
G166766A Agilent Fiehn GC/MS Metabolomics RTL Library: List of Compounds
G166766A Agilent Fiehn GC/MS Metabolomics RTL Library: List of Compounds Data Sheet 800 Metabolite library for more compound identification The Agilent Fiehn GC/MS metabolomics RTL Library is the most comprehensive commercially available GC/MS library of metabolite spectra. This expanding library currently contains over 1,400 entries for approximately 800 common metabolites, including spectra corresponding to partial derivatization of metabolites under the recommended conditions. In this list, each entry includes the name, CAS, and PubChem numbers of the native molecule for easier compound recognition and subsequent literature, software, and pathway searching. -
Streptococcus Gallolyticus Natalia Jiménez, Inés Reverón, María Esteban-Torres, Félix López De Felipe, Blanca De Las Rivas and Rosario Muñoz*
Jiménez et al. Microbial Cell Factories 2014, 13:154 http://www.microbialcellfactories.com/content/13/1/154 RESEARCH Open Access Genetic and biochemical approaches towards unravelling the degradation of gallotannins by Streptococcus gallolyticus Natalia Jiménez, Inés Reverón, María Esteban-Torres, Félix López de Felipe, Blanca de las Rivas and Rosario Muñoz* Abstract Background: Herbivores have developed mechanisms to overcome adverse effects of dietary tannins through the presence of tannin-resistant bacteria. Tannin degradation is an unusual characteristic among bacteria. Streptococcus gallolyticus is a common tannin-degrader inhabitant of the gut of herbivores where plant tannins are abundant. The biochemical pathway for tannin degradation followed by S. gallolyticus implies the action of tannase and gallate decarboxylase enzymes to produce pyrogallol, as final product. From these proteins, only a tannase (TanBSg) has been characterized so far, remaining still unknown relevant proteins involved in the degradation of tannins. Results: In addition to TanBSg, genome analysis of S. gallolyticus subsp. gallolyticus strains revealed the presence of an additional protein similar to tannases, TanASg (GALLO_0933). Interestingly, this analysis also indicated that only S. gallolyticus strains belonging to the subspecies “gallolyticus” possessed tannase copies. This observation was confirmed by PCR on representative strains from different subspecies. In S. gallolyticus subsp. gallolyticus the genes encoding gallate decarboxylase are clustered together and close to TanBSg, however, TanASg is not located in the vicinity of other genes involved in tannin metabolism. The expression of the genes enconding gallate decarboxylase and the two tannases was induced upon methyl gallate exposure. As TanBSg has been previously characterized, in this work the tannase activity of TanASg was demonstrated in presence of phenolic acid esters.