Role and Limitations of Epidemiology in Establishing a Causal Association Eduardo L
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Meta Analyses – Pros and Cons
Meta analyses – pros and cons Emily S Sena, PhD Centre for Clinical Brain Sciences, University of Edinburgh @camarades_ CAMARADES: Bringing evidence to translational medicine CAMARADES • Collaborative Approach to Meta-Analysis and Review of Animal Data from Experimental Studies • Look systematically across the modelling of a range of conditions • Data Repository – 30 Diseases – 40 Projects – 25,000 studies – from over 400,000 animals CAMARADES: Bringing evidence to translational medicine Why do we do meta-analysis of animal studies? • Animal models are generally performed to inform human health but when should you be convinced to move to the next step? • Systematic reviews & meta-analyses: – assess the quality and range of evidence – identify gaps in the field – quantify relative utility of outcome measures – inform power/sample size calculations – assess for publication bias – try to explain discrepancies between preclinical and clinical trial results – inform clinical trial design CAMARADES: Bringing evidence to translational medicine Systematic review and meta-analysis • Pros – What have we learnt about…….. • Translation? • Quality? • The 3Rs? • Cons – What are the limitations? • As good as the data that goes in? • Rapidly outdated • The Impact CAMARADES: Bringing evidence to translational medicine Systematic review and meta-analysis • Pros – What have we learnt about…….. • Translation? • Quality? • The 3Rs? • Cons – What are the limitations? • As good as the data that goes in? • Rapidly outdated • The Impact CAMARADES: Bringing evidence -
Melanoma: Epidemiology, Risk Factors, Pathogenesis, Diagnosis and Classification
in vivo 28: 1005-1012 (2014) Review Melanoma: Epidemiology, Risk Factors, Pathogenesis, Diagnosis and Classification MARCO RASTRELLI1, SAVERIA TROPEA1, CARLO RICCARDO ROSSI2 and MAURO ALAIBAC3 1Melanoma and Sarcoma Unit, Veneto Institute of Oncology, IOV- IRCCS, Padova, Italy; 2Melanoma and Sarcoma Unit, Veneto Institute of Oncology, IOV-IRCCS and Department of Surgery, Oncology and Gastroenterology, University of Padova, Padova, Italy; 3Dermatology Unit, University of Padova, Padova, Italy Abstract. This article reviews epidemiology, risk factors, Epidemiology pathogenesis and diagnosis of melanoma. Data on melanoma from the majority of countries show a rapid At the start of 21st century, melanoma remains a potentially increase of the incidence of this cancer, with a slowing of fatal malignancy. At a time when the incidence of many the rate of incidence in the period 1990-2000. Males are tumor types is decreasing, melanoma incidence continues to approximately 1.5-times more likely to develop melanoma increase (1). Although most patients have localized disease than females, while according to other studies, the different at the time of the diagnosis and are treated by surgical prevalence in both sexes must be analyzed in relation with excision of the primary tumor, many patients develop age: the incidence rate of melanoma is grater in women metastases (2). than men until they reach the age of 40 years, however, by The incidence of malignant melanoma has been increasing 75 years of age, the incidence is almost 3-times as high in worldwide, resulting in an important socio-economic men versus women. The most important and potentially problem. From being a rare cancer one century ago, the modifiable environmental risk factor for developing average lifetime risk for melanoma has now reached 1 in 50 malignant melanoma is the exposure to ultraviolet (UV) in many Western populations (3). -
Adaptive Enrichment Designs in Clinical Trials
Annual Review of Statistics and Its Application Adaptive Enrichment Designs in Clinical Trials Peter F. Thall Department of Biostatistics, M.D. Anderson Cancer Center, University of Texas, Houston, Texas 77030, USA; email: [email protected] Annu. Rev. Stat. Appl. 2021. 8:393–411 Keywords The Annual Review of Statistics and Its Application is adaptive signature design, Bayesian design, biomarker, clinical trial, group online at statistics.annualreviews.org sequential design, precision medicine, subset selection, targeted therapy, https://doi.org/10.1146/annurev-statistics-040720- variable selection 032818 Copyright © 2021 by Annual Reviews. Abstract All rights reserved Adaptive enrichment designs for clinical trials may include rules that use in- terim data to identify treatment-sensitive patient subgroups, select or com- pare treatments, or change entry criteria. A common setting is a trial to Annu. Rev. Stat. Appl. 2021.8:393-411. Downloaded from www.annualreviews.org compare a new biologically targeted agent to standard therapy. An enrich- ment design’s structure depends on its goals, how it accounts for patient heterogeneity and treatment effects, and practical constraints. This article Access provided by University of Texas - M.D. Anderson Cancer Center on 03/10/21. For personal use only. first covers basic concepts, including treatment-biomarker interaction, pre- cision medicine, selection bias, and sequentially adaptive decision making, and briefly describes some different types of enrichment. Numerical illus- trations are provided for qualitatively different cases involving treatment- biomarker interactions. Reviews are given of adaptive signature designs; a Bayesian design that uses a random partition to identify treatment-sensitive biomarker subgroups and assign treatments; and designs that enrich superior treatment sample sizes overall or within subgroups, make subgroup-specific decisions, or include outcome-adaptive randomization. -
Use of in Vivo and in Vitro Models to Guide Dose Selection for Neonatal Infections
Use of In Vivo and In Vitro Models to Guide Dose Selection for Neonatal Infections Professor William Hope Antimicrobial Pharmacodynamics & Therapeutics University of Liverpool September 2016 Disclosures • William Hope has received research funding from Pfizer, Gilead, Astellas, AiCuris, Amplyx, Spero Therapeutics and F2G, and acted as a consultant and/or given talks for Pfizer, Basilea, Astellas, F2G, Nordic Pharma, Medicines Company, Amplyx, Mayne Pharma, Spero Therapeutics, Auspherix, Cardeas and Pulmocide. First of all BIOMARKER OUTCOME OF CLINICAL DOSE INTEREST/IMPORTANCE •Decline in Log10CFU/mL •Linked to an outcome of clinical interest •Survival 7 6 5 4 CFU/g) CNS 10 3 Effect (log 2 1 0 0.01 0.1 1 10 100 1000 Total doseDose 5FC (mg/kg) PHARMACOKINETICS PHARMACODYNAMICS Concept of Expensive Failure COST Derisking White Powder Preclinical Program Clinical Program Concept from Trevor Mundell & Gates Foundation And this… Normal Therapeutics Drug A, Dose A1 versus Drug B, Dose B1 Pharmacodynamics is the Bedrock of ALL Therapeutics…it sits here without being seen One of the reasons simple scaling does not work is the fact pharmacodynamics are different Which means the conditions that govern exposure response relationships in neonates need to be carefully considered …Ignore these at your peril Summary of Preclinical Pharmacodynamic Studies for Neonates** • Hope el al JID 2008 – Micafungin for neonates – Primary question of HCME – Rabbit model with hematogenous dissemination • Warn et al AAC 2010 – Anidulafungin for neonates – Primary question -
Genomic Epidemiology and Recent Update on Nucleic Acid–Based Diagnostics for COVID-19
Current Tropical Medicine Reports https://doi.org/10.1007/s40475-020-00212-3 COVID-19 IN THE TROPICS: IMPACT AND SOLUTIONS (AJ RODRIGUEZ-MORALES, SECTION EDITOR)) Genomic Epidemiology and Recent Update on Nucleic Acid–Based Diagnostics for COVID-19 Ali A. Rabaan1 & Shamsah H. Al-Ahmed2 & Ranjit Sah3 & Jaffar A. Al-Tawfiq4,5,6 & Shafiul Haque7 & Harapan Harapan8,9,10 & Kovy Arteaga-Livias11,12 & D. Katterine Bonilla Aldana13,14 & Pawan Kumar 15 & Kuldeep Dhama16 & Alfonso J. Rodriguez-Morales12,13,14,17 Accepted: 10 September 2020 # Springer Nature Switzerland AG 2020 Abstract Purpose of the Review The SARS-CoV-2 genome has been sequenced and the data is made available in the public domain. Molecular epidemiological investigators have utilized this information to elucidate the origin, mode of transmission, and contact tracing of SARS-CoV-2. The present review aims to highlight the recent advancements in the molecular epidemiological studies along with updating recent advancements in the molecular (nucleic acid based) diagnostics for COVID-19, the disease caused by SARS-CoV-2. Recent Findings Epidemiological studies with the integration of molecular genetics principles and tools are now mainly focused on the elucidation of molecular pathology of COVID-19. Molecular epidemiological studies have discovered the mutability of SARS-CoV-2 which is of utmost importance for the development of therapeutics and vaccines for COVID-19. The whole world is now participating in the race for development of better and rapid diagnostics and therapeutics for COVID-19. Several molecular diagnostic techniques have been developed for accurate and precise diagnosis of COVID-19. Summary Novel genomic techniques have helped in the understanding of the disease pathology, origin, and spread of COVID- 19. -
Molecular Epidemiology and Whole-Genome Analysis of Bovine Foamy Virus in Japan
viruses Article Molecular Epidemiology and Whole-Genome Analysis of Bovine Foamy Virus in Japan Hirohisa Mekata 1,* , Tomohiro Okagawa 2, Satoru Konnai 2,3 and Takayuki Miyazawa 4 1 Center for Animal Disease Control, University of Miyazaki, Miyazaki 889-2192, Japan 2 Department of Advanced Pharmaceutics, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Japan; [email protected] (T.O.); [email protected] (S.K.) 3 Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Japan 4 Laboratory of Virus-Host Coevolution, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto 606-8507, Japan; [email protected] * Correspondence: [email protected]; Tel./Fax: +81-985-58-7881 Abstract: Bovine foamy virus (BFV) is a member of the foamy virus family in cattle. Information on the epidemiology, transmission routes, and whole-genome sequences of BFV is still limited. To understand the characteristics of BFV, this study included a molecular survey in Japan and the determination of the whole-genome sequences of 30 BFV isolates. A total of 30 (3.4%, 30/884) cattle were infected with BFV according to PCR analysis. Cattle less than 48 months old were scarcely infected with this virus, and older animals had a significantly higher rate of infection. To reveal the possibility of vertical transmission, we additionally surveyed 77 pairs of dams and 3-month-old calves in a farm already confirmed to have BFV. We confirmed that one of the calves born from a dam with BFV was infected. -
(GIVIMP) for the Development and Implementation of in Vitro Methods for 829 Regulatory Use in Human Safety Assessment
1 2 Draft GUIDANCE DOCUMENT ON GOOD IN VITRO METHOD PRACTICES (GIVIMP) 3 FOR THE DEVELOPMENT AND IMPLEMENTATION OF IN VITRO METHODS FOR 4 REGULATORY USE IN HUMAN SAFETY ASSESSMENT 5 6 FOREWORD 7 8 A guidance document on Good In Vitro Method Practices (GIVIMP) for the development and 9 implementation of in vitro methods for regulatory use in human safety assessment was 10 identified as a high priority requirement. The aim is to reduce the uncertainties in cell and 11 tissue-based in vitro method derived predictions by applying all necessary good scientific, 12 technical and quality practices from in vitro method development to in vitro method 13 implementation for regulatory use. 14 The draft guidance is coordinated by the European validation body EURL ECVAM and has 15 been accepted on the work plan of the OECD test guideline programme since April 2015 as a 16 joint activity between the Working Group on Good Laboratory Practice (GLP) and the 17 Working Group of the National Coordinators of the Test Guidelines Programme (WNT). 18 The draft document prepared by the principal co-authors has been sent in September 2016 to 19 all 37 members of the European Union Network of Laboratories for the Validation of 20 Alternative Methods (EU-NETVAL1) and has been subsequently discussed at the EU- 21 NETVAL meeting on the 10th of October 2016. 22 By November/December 2016 the comments of the OECD Working Group on GLP and 23 nominated experts of the OECD WNT will be forwarded to EURL ECVAM who will 24 incorporate these and prepare an updated version. -
Molecular Pathological Epidemiology Gives Clues to Paradoxical Findings
Molecular Pathological Epidemiology Gives Clues to Paradoxical Findings The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Nishihara, Reiko, Tyler J. VanderWeele, Kenji Shibuya, Murray A. Mittleman, Molin Wang, Alison E. Field, Edward Giovannucci, Paul Lochhead, and Shuji Ogino. 2015. “Molecular Pathological Epidemiology Gives Clues to Paradoxical Findings.” European Journal of Epidemiology 30 (10): 1129–35. https://doi.org/10.1007/ s10654-015-0088-4. Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:41392032 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Open Access Policy Articles, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#OAP HHS Public Access Author manuscript Author Manuscript Author ManuscriptEur J Epidemiol Author Manuscript. Author Author Manuscript manuscript; available in PMC 2016 October 07. Published in final edited form as: Eur J Epidemiol. 2015 October ; 30(10): 1129–1135. doi:10.1007/s10654-015-0088-4. Molecular Pathological Epidemiology Gives Clues to Paradoxical Findings Reiko Nishiharaa,b,c, Tyler J. VanderWeeled,e, Kenji Shibuyac, Murray A. Mittlemand,f, Molin Wangd,e,g, Alison E. Fieldd,g,h,i, Edward Giovannuccia,d,g, Paul Lochheadi,j, and Shuji Oginob,d,k aDepartment of Nutrition, Harvard T.H. Chan School of Public Health, 655 Huntington Ave., Boston, Massachusetts 02115 USA bDepartment of Medical Oncology, Dana-Farber Cancer Institute and Harvard Medical School, 450 Brookline Ave., Boston, Massachusetts 02215 USA cDepartment of Global Health Policy, Graduate School of Medicine, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo, Japan dDepartment of Epidemiology, Harvard T.H. -
Molecular Epidemiology and Precision Medicine
Pharmacogenetics: Past, Present, and Future Brooke L. Fridley, PhD Associate Professor of Biostatistics University of Kansas Medical Center Site Director, K-INBRE Bioinformatics Core Director, Biostatistics and Informatics Shared Resource, University of Kansas Cancer Center What is Pharmacogenomics? Pharmacogenomics & Precision Medicine Aims to deliver the correct drug or treatment: • At the right time • To the right patient • At the right dose Can only be achieved when we have accurate clinical tests (BIOMARKER) and companion drugs at our disposal What is a Biomarker? • Biomarker: “A characteristic that is objectively measured and evaluated as an indicator of – normal biological processes, – pathogenic processes, or – pharmacologic responses to a therapeutic intervention.” Biomarkers Definitions Working Group. Biomarkers and surrogate end points: preferred definitions and conceptual framework. Clin Pharmacol Ther 2001;69:89–95 Candidate Gene Era 1950 – 1990 – Structure of 1980 – 1985 – HGP DNA TPMT PCR begins 1997 – 1977 – 1983 – First 1987 – NHGRI Sanger human P450 formed Sequencing disease supergene gene family mapped Candidate • Genotyping Variant & • RT-PCR Gene • Re-sequencing genes (exons) with Sanger Studies Sequencing PK and PD and * Alleles (haplotypes) PGx Effect = Gene*Drug Interaction Drug 1 Drug 2 Genome-wide Array Era 2003 – FDA 2002 – issues draft 1998 -Illumina HapMap guidelines for founded begins PGx 2001 – 1st 2003 – 2004 – 1st NGS version of Completion of platform human HGP genome completed Genome- • SNP arrays (~mid 2000s) wide • mRNA arrays (~mid 1990s) Association Studies • Methylation arrays (~2008-2010) Study of Genetic Association with Drug Response Phenotypes Cases: Non-responders Cases: Responders Genetic association studies look at the frequency of genetic changes to try to determine whether specific changes are associated with a phenotype. -
Genetics and Not Shared Environment Explains Familial Resemblance in Adult Metabolomics Data
Twin Research and Human Genetics (2020), 23, 145–155 doi:10.1017/thg.2020.53 Article Genetics and Not Shared Environment Explains Familial Resemblance in Adult Metabolomics Data René Pool1,2* , Fiona A. Hagenbeek1,2* , Anne M. Hendriks1,2 , Jenny van Dongen1,2 , Gonneke Willemsen1 , Eco de Geus1,2 BBMRI Metabolomics Consortium3, Ko Willems van Dijk4,5,6 , Aswin Verhoeven7 , H. Eka Suchiman8 , Marian Beekman8 , P. Eline Slagboom8 , Amy C. Harms9,10 , Thomas Hankemeier9,10 and Dorret I. Boomsma1,2 1Department of Biological Psychology, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands, 2Amsterdam Public Health Research Institute, Amsterdam, the Netherlands, 3Members of the BBMRI Metabolomics Consortium are listed after the abstract, 4Einthoven Laboratory for Experimental Vascular Medicine, Leiden University Medical Center, Leiden, the Netherlands, 5Department of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands, 6Department of Internal Medicine Division Endocrinology, Leiden University Medical Center, Leiden, the Netherlands, 7Center for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, the Netherlands, 8Department of Biomedical Data Sciences, Molecular Epidemiology, Leiden University Medical Center, Leiden, the Netherlands, 9Division of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University, Leiden, the Netherlands and 10The Netherlands Metabolomics Centre, Leiden, the Netherlands Abstract Metabolites are small molecules involved in cellular metabolism where -
Transforming Clinical Trials with Digital Tech, and What That Means for the Patient
■ SCRIP 100 SPONSORED BY: Transforming Clinical Trials With Digital Tech, And What That Means For The Patient Many stakeholders within the pharma and biotech industries are management systems, safety systems and data repositories. A witnessing radical shifts taking place in how clinical trials are central data storage location provides sponsors and sites access conceived, designed and conducted. This transformation relies in real time, and increases productivity by allowing information heavily on applying the power of digital technologies. to be quickly shared and managed in a secure fashion. As new technologies emerge, they will converge through networks Additionally, the continuous streaming of data to cloud-based plat- and cloud-based platforms to create a new digital health care ecosys- forms could accelerate clinical trials and decrease protocol amend- tem. Collectively, they will have a greater impact on clinical trials than ments, resulting in reduced clinical trial costs. Also, sponsors can use any one technology would achieve separately. At the center of this cloud-based platforms for data submission to regulatory agencies, ecosystem is the patient, demonstrated by the uptick in personalized which has the potential to accelerate drug development, streamline therapies and a growing emphasis on patient-reported outcomes. regulatory review and enhance regulatory decision-making.2 While the mean projected return on new drug research and devel- DEMOCRATIZATION OF AI, DATA AND ALGORITHMS opment (R&D) investments by a dozen large cap biopharma firms fell from 10.1% in 2010 to 1.9% in 2018,1 an opportunity remains The influx of big data is fueling algorithms that are the building blocks for emerging digital technologies to improve R&D productivity. -
Integration of Molecular Pathology, Epidemiology and Social Science for Global Precision Medicine
Expert Review of Molecular Diagnostics ISSN: 1473-7159 (Print) 1744-8352 (Online) Journal homepage: http://www.tandfonline.com/loi/iero20 Integration of molecular pathology, epidemiology and social science for global precision medicine Akihiro Nishi, Danny A Milner Jr, Edward L Giovannucci, Reiko Nishihara, Andy S Tan, Ichiro Kawachi & Shuji Ogino To cite this article: Akihiro Nishi, Danny A Milner Jr, Edward L Giovannucci, Reiko Nishihara, Andy S Tan, Ichiro Kawachi & Shuji Ogino (2015): Integration of molecular pathology, epidemiology and social science for global precision medicine, Expert Review of Molecular Diagnostics, DOI: 10.1586/14737159.2016.1115346 To link to this article: http://dx.doi.org/10.1586/14737159.2016.1115346 Published online: 04 Dec 2015. Submit your article to this journal Article views: 82 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=iero20 Download by: [University of California, San Francisco] Date: 31 December 2015, At: 13:21 Perspectives Integration of molecular pathology, epidemiology and social science for global precision medicine Expert Rev. Mol. Diagn. Early online, 1–13 (2015) Akihiro Nishi1,2, The precision medicine concept and the unique disease principle imply that each patient has Danny A Milner Jr3,4, unique pathogenic processes resulting from heterogeneous cellular genetic and epigenetic Edward L alterations and interactions between cells (including immune cells) and exposures, including Giovannucci5,6,7, dietary, environmental, microbial and lifestyle factors. As a core method field in population health science and medicine, epidemiology is a growing scientific discipline that can analyze Reiko Nishihara5,6,8,9, 9,10 disease risk factors and develop statistical methodologies to maximize utilization of big data Andy S Tan , on populations and disease pathology.