Improving Kriging Surrogates of High-Dimensional Design Models By

Total Page:16

File Type:pdf, Size:1020Kb

Improving Kriging Surrogates of High-Dimensional Design Models By Improving kriging surrogates of high-dimensional design models by Partial Least Squares dimension reduction Mohamed-Amine Bouhlel, Nathalie Bartoli, Abdelkader Otsmane, Joseph Morlier To cite this version: Mohamed-Amine Bouhlel, Nathalie Bartoli, Abdelkader Otsmane, Joseph Morlier. Improving kriging surrogates of high-dimensional design models by Partial Least Squares dimension reduction. 2015. hal-01232938 HAL Id: hal-01232938 https://hal.archives-ouvertes.fr/hal-01232938 Preprint submitted on 24 Nov 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Structural and Multidisciplinary Optimization manuscript No. (will be inserted by the editor) Mohamed Amine Bouhlel · Nathalie Bartoli · Abdelkader Otsmane · Joseph Morlier Improving kriging surrogates of high-dimensional design models by Partial Least Squares dimension reduction Received: date / Revised: date Abstract Engineering computer codes are often compu- Symbols and notation tationally expensive. To lighten this load, we exploit new covariance kernels to replace computationally expensive Matrices and vectors are in bold type. codes with surrogate models. For input spaces with large dimensions, using the Kriging model in the standard way is computationally expensive because a large covariance Symbol Meaning matrix must be inverted several times to estimate the pa- det determinant of a matrix rameters of the model. We address this issue herein by j · j absolute value constructing a covariance kernel that depends on only R set of real numbers + a few parameters. The new kernel is constructed based R set of positive real numbers on information obtained from the Partial Least Squares n number of sampling points method. Promising results are obtained for numerical ex- d dimensions h number of principal components retained amples with up to 100 dimensions, and significant com- x 1 × d vector th putational gain is obtained while maintaining sufficient xj j element of a vector x accuracy. X n × d matrix containing sampling points y n × 1 vector containing simulation of X x(i) ith training point for i = 1; : : : ; n (a 1 × d vector) Keywords Kriging · Partial Least Squares · Experi- w(l) d × 1 vector containing X weights given by ment design · Metamodels the lth PLS iteration for l = 1; : : : ; h X(0) X X(l−1) Matrix containing residual of inner regression of (l − 1)st PLS iteration for M. A. Bouhlel l = 1; : : : ; h SNECMA, Rond-point Ren´eRavaud-R´eau,77550 Moissy- k(·; ·) covariance function Cramayel, France N (0; k(·; ·)) Distribution of a Gaussian process with Tel.: +33-(0)5-62252938 mean function 0 and covariance function E-mail: [email protected] k(·; ·) E-mail: [email protected] xt Superscript t denotes the transpose operation of the vector x N. Bartoli ONERA, 2 avenue Edouard´ Belin, 31055 Toulouse, France Tel.: +33-(0)5-62252644 E-mail: [email protected] 1 Introduction and main contribution J. Morlier Universit´ede Toulouse, Institut Cl´ement Ader, ISAE, 10 Av- In recent decades, because simulation models have striven enue Edouard Belin, 31055 Toulouse Cedex 4, France to more accurately represent the true physics of phe- Tel.: +33-(0)5-61338131 E-mail: [email protected] nomena, computational tools in engineering have become ever more complex and computationally expensive. To A. Otsmane SNECMA, Rond-point Ren´eRavaud-R´eau,77550 Moissy- address this new challenge, a large number of input de- Cramayel, France sign variables, such as geometric representation, are of- Tel.: +33-(0)1-60599887 ten considered. Thus, to analyze the sensitivity of input E-mail: [email protected] design variables (this is called a \sensitivity analysis") 2 or to search for the best point of a physical objective dependencies between inputs. Information given by PLS under certain physical constraints (i.e., global optimiza- is integrated in the covariance structure of the kriging tion), a large number of computing iterations are re- model to reduce the number of hyper-parameters. The quired, which is impractical when using simulations in combination of kriging and PLS is abbreviated KPLS real time. This is the main reason that surrogate model- and allows us to build a fast kriging model because it ing techniques have been growing in popularity in recent requires fewer hyper-parameters in its covariance func- years. Surrogate models, also called metamodels, are vi- tion; all without eliminating any input variables from the tal in this context and are widely used as substitutes for original problem. time-consuming high-fidelity models. They are mathe- The KPLS methods is used for many academic and matical tools that approximate coded simulations of a industrial verifications, and promising results have been few well-chosen experiments that serve as models for the obtained for problems with up to 100 dimensions. The design of experiments. The main role of surrogate mod- cases used in this paper do not exceed 100 input vari- els is to describe the underlying physics of the phenom- ables, which should be quite sufficient for most engineer- ena in question. Different types of surrogate models can ing problems. Problems with more than 100 inputs may be found in the literature, such as regression, smooth- lead to memory difficulties with the toolbox Scikit-learn ing spline [Wahba and Craven (1978); Wahba (1990)], (version 0.14), on which the KPLS method is based. neural networks [Haykin (1998)], radial basis functions This paper is organized as follows: Section 2 summa- [Buhmann (2003)] and Gaussian-process modeling [Ras- rizes the theoretical basis of the universal kriging model, mussen and Williams (2006)]. recalling the key equations. The proposed KPLS model is In this article, we focus on the kriging model because then described in detail in section 3 by using the kriging it estimates the prediction error. This model is also re- equations. Section 4 compares and analyzes the results ferred to as the Gaussian-process model [Rasmussen and of the KPLS model with those of the kriging model when Williams (2006)] and was presented first in geostatis- applied to classic analytical examples and some complex tics [see, e.g., Cressie (1988) or Goovaerts (1997)] be- engineering examples. Finally, section 5 concludes and fore being extended to computer experiments and ma- gives some perspectives. chine learning [Schonlau (1998); Sasena (2002); Jones et al (1998); Picheny et al (2010)]. The kriging model has become increasingly popular due to its flexibility 2 Universal kriging model in accurately imitating the dynamics of computationally expensive simulations and its ability to estimate the er- To understand the mathematics of the proposed meth- ror of the predictor. However, it suffers from some well- ods, we first review the kriging equations. The objective known drawbacks in high dimension, which may be due is to introduce the notation and to briefly describe the to multiple causes. For starters, the size of the covariance theory behind the kriging model. Assume that we have matrix of the kriging model may increase dramatically evaluated a cost deterministic function of n points x(i) if the model requires a large number of sample points. (i = 1; : : : ; n) with As a result, inverting the covariance matrix is compu- (i) h (i) (i)i d tationally expensive. The second drawback is the opti- x = x1 ;:::; xd 2 B ⊂ R ; mization of the subproblem, which involves estimating the hyper-parameters for the covariance matrix. This is and we denote X by the matrix [x(1)t;:::; x(n)t]t. For a complex problem that requires inverting the covariance simplicity, B is considered to be a hypercube expressed matrix several times. Some recent works have addressed by the product between intervals of each direction space, the drawbacks of high-dimensional Gaussian processes Qd i.e., B = j=1[aj; bj], where aj; bj 2 R with aj ≤ bj for [Hensman et al (2013); Damianou and Lawrence (2013); j = 1; : : : ; d. Simulating these n inputs gives the outputs Durrande et al (2012)] or the large-scale sampling of data y = [y(1); : : : ; y(n)]t with y(i) = y(x(i)) for i = 1; : : : ; n. [Sakata et al (2004)]. One way to reduce CPU time when We usey ^(x) to denote the prediction of the true function constructing a kriging model is to reduce the number of y(x) which is considered as a realization of a stochastic hyper-parameters, but this approach assumes that the process Y (x) for all x 2 B. For the universal kriging kriging model exhibits the same dynamics in all direc- model [Roustant et al (2012); Picheny et al (2010)], Y is tions [Mera (2007)]. written as Thus, because estimating the kriging parameters can m be time consuming, especially with dimensions as large X Y (x) = βjfj(x) + Z(x); (1) as 100, we present herein a new method that combines j=1 the kriging model with the Partial Least Squares (PLS) technique to obtain a fast predictor. Like the method of where, for j = 1; : : : ; m, fj is a known independent ba- principle components analysis (PCA), the PLS technique sis function, βj 2 R is an unknown parameter, and Z reduces dimension and reveals how inputs depend on out- is a Gaussian process defined by Z(x) ∼ N (0; k), with puts. PLS is used in this work because PCA only exposes k being a stationary covariance function, also called a 3 covariance kernel.
Recommended publications
  • An Introduction to Spatial Autocorrelation and Kriging
    An Introduction to Spatial Autocorrelation and Kriging Matt Robinson and Sebastian Dietrich RenR 690 – Spring 2016 Tobler and Spatial Relationships • Tobler’s 1st Law of Geography: “Everything is related to everything else, but near things are more related than distant things.”1 • Simple but powerful concept • Patterns exist across space • Forms basic foundation for concepts related to spatial dependency Waldo R. Tobler (1) Tobler W., (1970) "A computer movie simulating urban growth in the Detroit region". Economic Geography, 46(2): 234-240. Spatial Autocorrelation (SAC) – What is it? • Autocorrelation: A variable is correlated with itself (literally!) • Spatial Autocorrelation: Values of a random variable, at paired points, are more or less similar as a function of the distance between them 2 Closer Points more similar = Positive Autocorrelation Closer Points less similar = Negative Autocorrelation (2) Legendre P. Spatial Autocorrelation: Trouble or New Paradigm? Ecology. 1993 Sep;74(6):1659–1673. What causes Spatial Autocorrelation? (1) Artifact of Experimental Design (sample sites not random) Parent Plant (2) Interaction of variables across space (see below) Univariate case – response variable is correlated with itself Eg. Plant abundance higher (clustered) close to other plants (seeds fall and germinate close to parent). Multivariate case – interactions of response and predictor variables due to inherent properties of the variables Eg. Location of seed germination function of wind and preferred soil conditions Mechanisms underlying patterns will depend on study system!! Why is it important? Presence of SAC can be good or bad (depends on your objectives) Good: If SAC exists, it may allow reliable estimation at nearby, non-sampled sites (interpolation).
    [Show full text]
  • Spatial Autocorrelation: Covariance and Semivariance Semivariance
    Spatial Autocorrelation: Covariance and Semivariancence Lily Housese ­P eters GEOG 593 November 10, 2009 Quantitative Terrain Descriptorsrs Covariance and Semivariogram areare numericc methods used to describe the character of the terrain (ex. Terrain roughness, irregularity) Terrain character has important implications for: 1. the type of sampling strategy chosen 2. estimating DTM accuracy (after sampling and reconstruction) Spatial Autocorrelationon The First Law of Geography ““ Everything is related to everything else, but near things are moo re related than distant things.” (Waldo Tobler) The value of a variable at one point in space is related to the value of that same variable in a nearby location Ex. Moranan ’s I, Gearyary ’s C, LISA Positive Spatial Autocorrelation (Neighbors are similar) Negative Spatial Autocorrelation (Neighbors are dissimilar) R(d) = correlation coefficient of all the points with horizontal interval (d) Covariance The degree of similarity between pairs of surface points The value of similarity is an indicator of the complexity of the terrain surface Smaller the similarity = more complex the terrain surface V = Variance calculated from all N points Cov (d) = Covariance of all points with horizontal interval d Z i = Height of point i M = average height of all points Z i+d = elevation of the point with an interval of d from i Semivariancee Expresses the degree of relationship between points on a surface Equal to half the variance of the differences between all possible points spaced a constant distance apart
    [Show full text]
  • Augmenting Geostatistics with Matrix Factorization: a Case Study for House Price Estimation
    International Journal of Geo-Information Article Augmenting Geostatistics with Matrix Factorization: A Case Study for House Price Estimation Aisha Sikder ∗ and Andreas Züfle Department of Geography and Geoinformation Science, George Mason University, Fairfax, VA 22030, USA; azufl[email protected] * Correspondence: [email protected] Received: 14 January 2020; Accepted: 22 April 2020; Published: 28 April 2020 Abstract: Singular value decomposition (SVD) is ubiquitously used in recommendation systems to estimate and predict values based on latent features obtained through matrix factorization. But, oblivious of location information, SVD has limitations in predicting variables that have strong spatial autocorrelation, such as housing prices which strongly depend on spatial properties such as the neighborhood and school districts. In this work, we build an algorithm that integrates the latent feature learning capabilities of truncated SVD with kriging, which is called SVD-Regression Kriging (SVD-RK). In doing so, we address the problem of modeling and predicting spatially autocorrelated data for recommender engines using real estate housing prices by integrating spatial statistics. We also show that SVD-RK outperforms purely latent features based solutions as well as purely spatial approaches like Geographically Weighted Regression (GWR). Our proposed algorithm, SVD-RK, integrates the results of truncated SVD as an independent variable into a regression kriging approach. We show experimentally, that latent house price patterns learned using SVD are able to improve house price predictions of ordinary kriging in areas where house prices fluctuate locally. For areas where house prices are strongly spatially autocorrelated, evident by a house pricing variogram showing that the data can be mostly explained by spatial information only, we propose to feed the results of SVD into a geographically weighted regression model to outperform the orginary kriging approach.
    [Show full text]
  • Geostatistical Approach for Spatial Interpolation of Meteorological Data
    Anais da Academia Brasileira de Ciências (2016) 88(4): 2121-2136 (Annals of the Brazilian Academy of Sciences) Printed version ISSN 0001-3765 / Online version ISSN 1678-2690 http://dx.doi.org/10.1590/0001-3765201620150103 www.scielo.br/aabc Geostatistical Approach for Spatial Interpolation of Meteorological Data DERYA OZTURK1 and FATMAGUL KILIC2 1Department of Geomatics Engineering, Ondokuz Mayis University, Kurupelit Campus, 55139, Samsun, Turkey 2Department of Geomatics Engineering, Yildiz Technical University, Davutpasa Campus, 34220, Istanbul, Turkey Manuscript received on February 2, 2015; accepted for publication on March 1, 2016 ABSTRACT Meteorological data are used in many studies, especially in planning, disaster management, water resources management, hydrology, agriculture and environment. Analyzing changes in meteorological variables is very important to understand a climate system and minimize the adverse effects of the climate changes. One of the main issues in meteorological analysis is the interpolation of spatial data. In recent years, with the developments in Geographical Information System (GIS) technology, the statistical methods have been integrated with GIS and geostatistical methods have constituted a strong alternative to deterministic methods in the interpolation and analysis of the spatial data. In this study; spatial distribution of precipitation and temperature of the Aegean Region in Turkey for years 1975, 1980, 1985, 1990, 1995, 2000, 2005 and 2010 were obtained by the Ordinary Kriging method which is one of the geostatistical interpolation methods, the changes realized in 5-year periods were determined and the results were statistically examined using cell and multivariate statistics. The results of this study show that it is necessary to pay attention to climate change in the precipitation regime of the Aegean Region.
    [Show full text]
  • Kriging Models for Linear Networks and Non‐Euclidean Distances
    Received: 13 November 2017 | Accepted: 30 December 2017 DOI: 10.1111/2041-210X.12979 RESEARCH ARTICLE Kriging models for linear networks and non-Euclidean distances: Cautions and solutions Jay M. Ver Hoef Marine Mammal Laboratory, NOAA Fisheries Alaska Fisheries Science Center, Abstract Seattle, WA, USA 1. There are now many examples where ecological researchers used non-Euclidean Correspondence distance metrics in geostatistical models that were designed for Euclidean dis- Jay M. Ver Hoef tance, such as those used for kriging. This can lead to problems where predictions Email: [email protected] have negative variance estimates. Technically, this occurs because the spatial co- Handling Editor: Robert B. O’Hara variance matrix, which depends on the geostatistical models, is not guaranteed to be positive definite when non-Euclidean distance metrics are used. These are not permissible models, and should be avoided. 2. I give a quick review of kriging and illustrate the problem with several simulated examples, including locations on a circle, locations on a linear dichotomous net- work (such as might be used for streams), and locations on a linear trail or road network. I re-examine the linear network distance models from Ladle, Avgar, Wheatley, and Boyce (2017b, Methods in Ecology and Evolution, 8, 329) and show that they are not guaranteed to have a positive definite covariance matrix. 3. I introduce the reduced-rank method, also called a predictive-process model, for creating valid spatial covariance matrices with non-Euclidean distance metrics. It has an additional advantage of fast computation for large datasets. 4. I re-analysed the data of Ladle et al.
    [Show full text]
  • Comparison of Spatial Interpolation Methods for the Estimation of Air Quality Data
    Journal of Exposure Analysis and Environmental Epidemiology (2004) 14, 404–415 r 2004 Nature Publishing Group All rights reserved 1053-4245/04/$30.00 www.nature.com/jea Comparison of spatial interpolation methods for the estimation of air quality data DAVID W. WONG,a LESTER YUANb AND SUSAN A. PERLINb aSchool of Computational Sciences, George Mason University, Fairfax, VA, USA bNational Center for Environmental Assessment, Washington, US Environmental Protection Agency, USA We recognized that many health outcomes are associated with air pollution, but in this project launched by the US EPA, the intent was to assess the role of exposure to ambient air pollutants as risk factors only for respiratory effects in children. The NHANES-III database is a valuable resource for assessing children’s respiratory health and certain risk factors, but lacks monitoring data to estimate subjects’ exposures to ambient air pollutants. Since the 1970s, EPA has regularly monitored levels of several ambient air pollutants across the country and these data may be used to estimate NHANES subject’s exposure to ambient air pollutants. The first stage of the project eventually evolved into assessing different estimation methods before adopting the estimates to evaluate respiratory health. Specifically, this paper describes an effort using EPA’s AIRS monitoring data to estimate ozone and PM10 levels at census block groups. We limited those block groups to counties visited by NHANES-III to make the project more manageable and apply four different interpolation methods to the monitoring data to derive air concentration levels. Then we examine method-specific differences in concentration levels and determine conditions under which different methods produce significantly different concentration values.
    [Show full text]
  • Introduction to Modeling Spatial Processes Using Geostatistical Analyst
    Introduction to Modeling Spatial Processes Using Geostatistical Analyst Konstantin Krivoruchko, Ph.D. Software Development Lead, Geostatistics [email protected] Geostatistics is a set of models and tools developed for statistical analysis of continuous data. These data can be measured at any location in space, but they are available in a limited number of sampled points. Since input data are contaminated by errors and models are only approximations of the reality, predictions made by Geostatistical Analyst are accompanied by information on uncertainties. The first step in statistical data analysis is to verify three data features: dependency, stationarity, and distribution. If data are independent, it makes little sense to analyze them geostatisticaly. If data are not stationary, they need to be made so, usually by data detrending and data transformation. Geostatistics works best when input data are Gaussian. If not, data have to be made to be close to Gaussian distribution. Geostatistical Analyst provides exploratory data analysis tools to accomplish these tasks. With information on dependency, stationarity, and distribution you can proceed to the modeling step of the geostatistical data analysis, kriging. The most important step in kriging is modeling spatial dependency, semivariogram modeling. Geostatistical Analyst provides large choice of semivariogram models and reliable defaults for its parameters. Geostatistical Analyst provides six kriging models and validation and cross-validation diagnostics for selecting the best model. Geostatistical Analyst can produce four output maps: prediction, prediction standard errors, probability, and quantile. Each output map produces a different view of the data. This tutorial only explains basic geostatistical ideas and how to use the geostatistical tools and models in Geostatistical Analyst.
    [Show full text]
  • Geostatistics Kriging Method As a Special Case of Geodetic Least-Squares Collocation
    A. Ş. Ilie Geostatistics Kriging Method as a Special Case of Geodetic Least-Squares Collocation GEOSTATISTICS KRIGING METHOD AS A SPECIAL CASE OF GEODETIC LEAST-SQUARES COLLOCATION Andrei-Şerban ILIE, PhD Candidate Eng. – Technical University of Civil Engineering Bucharest, [email protected] Abstract: Modeling is a widespread method used for understanding the physical reality. Among the many applications of modeling are: determining the shape of the earth's surface, geological and geophysical studies, hydrology and hydrography. Modeling is realized through interpolation techniques such as kriging method and geodetic least-squares collocation. In this paper is presented a comparison between these two methods. Keywords: geostatistics, kriging, collocation 1. Introduction Kriging is a very popular method used in geostatistics to interpolate the value of a random field (or spatial stochastic process) from values at nearby locations. Kriging estimator is a linear estimator because the predicted value is obtained as a linear combination of known values. This and the fact that kriging technique is based on the least-squares principle have made some authors [1] to call it optimal predictor or best linear predictor. Depending on the properties of the stochastic process or random field, different types of kriging apply. Least-squares collocation is an interpolation method derived from geodetic sciences, first introduced by H. Moritz, for determining the earth's figure and gravitational field. Collocation method can be interpreted as a statistical estimation method combining least- squares adjustment and least-squares prediction Another important component in estimation of a random field from discrete values measured or known in various spatial locations, is a parameter or function of the process which describes its spatial dependence.
    [Show full text]
  • Space–Time Kriging of Precipitation: Modeling the Large-Scale Variation with Model GAMLSS
    water Article Space–Time Kriging of Precipitation: Modeling the Large-Scale Variation with Model GAMLSS Elias Silva de Medeiros 1,* , Renato Ribeiro de Lima 2, Ricardo Alves de Olinda 3 , Leydson G. Dantas 4 and Carlos Antonio Costa dos Santos 4,5 1 FACET, Federal University of Grande Dourados, Dourados 79.825-070, Brazil 2 Department of Statistics, Federal University of Lavras, Lavras 37.200-000, Brazil; rrlima.ufl[email protected] 3 Department of Statistics, Paraíba State University, Campina Grande-PB 58.429-500, Brazil; [email protected] 4 Academic Unity of Atmospheric Sciences, Center for Technology and Natural Resources, Federal University of Campina Grande-PB, Campina Grande 58.109-970, Brazil; [email protected] (L.G.D.); [email protected] or [email protected] (C.A.C.d.S.) 5 Daugherty Water for Food Global Institute, University of Nebraska, Lincoln, NE 68588-6203, USA * Correspondence: [email protected]; Tel.: +55-67-3410-2094 Received: 16 October 2019; Accepted: 7 November 2019; Published: 12 November 2019 Abstract: Knowing the dynamics of spatial–temporal precipitation distribution is of vital significance for the management of water resources, in highlight, in the northeast region of Brazil (NEB). Several models of large-scale precipitation variability are based on the normal distribution, not taking into consideration the excess of null observations that are prevalent in the daily or even monthly precipitation information of the region under study. This research proposes a novel way of modeling the trend component by using an inflated gamma distribution of zeros. The residuals of this regression are generally space–time dependent and have been modeled by a space–time covariance function.
    [Show full text]
  • Sampling Design Optimization for Space-Time Kriging
    See discussions, stats, and author profiles for this publication at: http://www.researchgate.net/publication/233540150 Sampling Design Optimization for Space-Time Kriging ARTICLE · OCTOBER 2012 DOI: 10.1002/9781118441862.ch9 CITATIONS 2 4 AUTHORS: Gerard Heuvelink Daniel A. Griffith Wageningen University University of Texas at Dallas 252 PUBLICATIONS 3,528 CITATIONS 207 PUBLICATIONS 2,950 CITATIONS SEE PROFILE SEE PROFILE Tomislav Hengl S.J. Melles ISRIC - World Soil Information Ryerson University 99 PUBLICATIONS 1,671 CITATIONS 25 PUBLICATIONS 296 CITATIONS SEE PROFILE SEE PROFILE Available from: S.J. Melles Retrieved on: 28 August 2015 1 Sampling design optimization for space-time kriging G.B.M. Heuvelink, D.A. Griffith, T. Hengl and S.J. Melles Wageningen University, The University of Texas at Dallas, ISRIC World Soil Information, and Trent University 1.1 Introduction Space-time geostatistics has received increasing attention over the past few decades, both on the theoretical side with publications that extend the set of valid space-time covariance structures (e.g., Fonseca and Steel (2011); Fuentes et al. (2008); Ma (2003)), and on a practical side with publications of real-world applications (e.g., Gething et al. (2007); Heuvelink and Griffith (2010); see citations in Cressie and Wikle (2011)). Public domain software solutions to space-time kriging are becoming more user-friendly (e.g., Cameletti (2012); Pebesma (2012); Rue (2012); Spadavecchia (2008); Yu et al. (2007)), although not as much as is the case with spatial kriging. These developments, combined with almost all environmental variables varying in both space and time, indicate that the use of space-time kriging will likely increase dramatically in the near future.
    [Show full text]
  • Tutorial and Manual for Geostatistical Analyses with the R Package Georob
    Tutorial and Manual for Geostatistical Analyses with the R package georob Andreas Papritz June 4, 2021 Contents 1 Summary 3 2 Introduction 3 2.1 Model ...................................... 3 2.2 Estimation .................................... 4 2.3 Prediction .................................... 5 2.4 Functionality .................................. 5 3 Model-based Gaussian analysis of zinc, data set meuse 7 3.1 Exploratory analysis .............................. 7 3.2 Fitting a spatial linear model by Gaussian (RE)ML ............. 13 3.3 Computing Kriging predictions ........................ 20 3.3.1 Lognormal point Kriging ........................ 20 3.3.2 Lognormal block Kriging ........................ 22 4 Robust analysis of coalash data 27 4.1 Exploratory analysis .............................. 27 4.2 Fitting a spatial linear model robust REML ................. 33 4.3 Computing robust Kriging predictions .................... 44 4.3.1 Point Kriging .............................. 44 4.3.2 Block Kriging .............................. 46 5 Details about parameter estimation 50 5.1 Implemented variogram models ........................ 50 5.2 Estimating parameters of power function variogram ............. 50 5.3 Estimating parameters of geometrically anisotropic variograms ....... 50 5.4 Estimating variance of micro-scale variation ................. 51 5.5 Estimating variance parameters by Gaussian (RE)ML ............ 51 5.6 Constraining estimates of variogram parameters ............... 52 5.7 Computing robust initial estimates of parameters for robust REML .... 52 5.8 Estimating parameters of “nested” variogram models ............ 53 5.9 Controlling georob() by the function control.georob() .......... 53 5.9.1 Gaussian (RE)ML estimation ..................... 53 5.9.2 Robust REML estimation ....................... 54 1 5.9.3 Approximation of covariances of fixed and random effects and residuals 54 5.9.4 Transformations of variogram parameters for (RE)ML estimation . 55 5.9.5 Miscellaneous arguments of control.georob() ..........
    [Show full text]
  • Multigaussian Kriging: a Review1 Julian M
    Annual Report 2019 Paper 2019-09 MultiGaussian kriging: a review1 Julian M. Ortiz ([email protected]) Abstract The kriging estimate has an associated kriging variance which measures the variance of the error between the estimate and the true value. However, this measure of uncertainty does not depend on the actual value of the variable, but only on the spatial configuration of the sample data used in the estimation. Thus, it does not capture the “proportional effect”, that is, the fact that the variability depends on the local value of the variable. In this paper, we review the multiGaussian framework, which allows characterizing the uncertainty in a simple, yet effective manner. As most variables are not normally dis- tributed, the approach requires a quantile transformation and a back transformation at the end of the analysis. We show that the simple kriging estimate and its corresponding variance identify the conditional expectation and variance in a multiGaussian frame- work. Thus, uncertainty quantification is simply achieved by transforming the data to a Gaussian distribution, performing simple kriging of the normally transformed values and back transforming the resulting distribution to original units. 1. Introduction The random function model provides the means for inference. We can assume properties (statistical properties, that is) of the variable at every location, and from there, derive an estimate that complies with some imposed properties, such as unbiasedness and optimality. Once the estimate is obtained, the next question arises: what is the uncertainty around that estimate? The kriging estimate provides the best unbiased linear estimator and it comes with an associated kriging variance.
    [Show full text]