Биоорганическая Химия. Лабораторные Занятия = Bioorganic Chemis- Try Laboratory Classes: Учеб
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Chapter 21 the Chemistry of Carboxylic Acid Derivatives
Instructor Supplemental Solutions to Problems © 2010 Roberts and Company Publishers Chapter 21 The Chemistry of Carboxylic Acid Derivatives Solutions to In-Text Problems 21.1 (b) (d) (e) (h) 21.2 (a) butanenitrile (common: butyronitrile) (c) isopentyl 3-methylbutanoate (common: isoamyl isovalerate) The isoamyl group is the same as an isopentyl or 3-methylbutyl group: (d) N,N-dimethylbenzamide 21.3 The E and Z conformations of N-acetylproline: 21.5 As shown by the data above the problem, a carboxylic acid has a higher boiling point than an ester because it can both donate and accept hydrogen bonds within its liquid state; hydrogen bonding does not occur in the ester. Consequently, pentanoic acid (valeric acid) has a higher boiling point than methyl butanoate. Here are the actual data: INSTRUCTOR SUPPLEMENTAL SOLUTIONS TO PROBLEMS • CHAPTER 21 2 21.7 (a) The carbonyl absorption of the ester occurs at higher frequency, and only the carboxylic acid has the characteristic strong, broad O—H stretching absorption in 2400–3600 cm–1 region. (d) In N-methylpropanamide, the N-methyl group is a doublet at about d 3. N-Ethylacetamide has no doublet resonances. In N-methylpropanamide, the a-protons are a quartet near d 2.5. In N-ethylacetamide, the a- protons are a singlet at d 2. The NMR spectrum of N-methylpropanamide has no singlets. 21.9 (a) The first ester is more basic because its conjugate acid is stabilized not only by resonance interaction with the ester oxygen, but also by resonance interaction with the double bond; that is, the conjugate acid of the first ester has one more important resonance structure than the conjugate acid of the second. -
Organic Chemistry
Wisebridge Learning Systems Organic Chemistry Reaction Mechanisms Pocket-Book WLS www.wisebridgelearning.com © 2006 J S Wetzel LEARNING STRATEGIES CONTENTS ● The key to building intuition is to develop the habit ALKANES of asking how each particular mechanism reflects Thermal Cracking - Pyrolysis . 1 general principles. Look for the concepts behind Combustion . 1 the chemistry to make organic chemistry more co- Free Radical Halogenation. 2 herent and rewarding. ALKENES Electrophilic Addition of HX to Alkenes . 3 ● Acid Catalyzed Hydration of Alkenes . 4 Exothermic reactions tend to follow pathways Electrophilic Addition of Halogens to Alkenes . 5 where like charges can separate or where un- Halohydrin Formation . 6 like charges can come together. When reading Free Radical Addition of HX to Alkenes . 7 organic chemistry mechanisms, keep the elec- Catalytic Hydrogenation of Alkenes. 8 tronegativities of the elements and their valence Oxidation of Alkenes to Vicinal Diols. 9 electron configurations always in your mind. Try Oxidative Cleavage of Alkenes . 10 to nterpret electron movement in terms of energy Ozonolysis of Alkenes . 10 Allylic Halogenation . 11 to make the reactions easier to understand and Oxymercuration-Demercuration . 13 remember. Hydroboration of Alkenes . 14 ALKYNES ● For MCAT preparation, pay special attention to Electrophilic Addition of HX to Alkynes . 15 Hydration of Alkynes. 15 reactions where the product hinges on regio- Free Radical Addition of HX to Alkynes . 16 and stereo-selectivity and reactions involving Electrophilic Halogenation of Alkynes. 16 resonant intermediates, which are special favor- Hydroboration of Alkynes . 17 ites of the test-writers. Catalytic Hydrogenation of Alkynes. 17 Reduction of Alkynes with Alkali Metal/Ammonia . 18 Formation and Use of Acetylide Anion Nucleophiles . -
Packet of Wiser Reports on Acetone Acetonitrile
Ac&tone ^Hazmat - NFPA Hazard Classification Page 1 of Acetone CAS RN: 67-64-1 Hazmat - NFPA Hazard Classification SOMS DocID 2085807 Health: 1 (Slight) Materials that, on exposure, would cause significant irritation, but only minor residual injury, including those requiring the use of an approved air-purifying respirator. These materials are only slightly hazardous to health and only breathing protection is needed. Flammability: 3 (Severe) rhis degree includes Class IB and 1C flammable liquids and materials that can be easily ignited under almost all normal temperature conditions. Water may be ineffective in controlling or extinguishing fires in such materials. Instability: 0 (Minimal) This degree includes materials that are normally stable, even under fire exposure conditions, and that do not react with water.- Norma lire fighting procedures may be used. Printed by WISER for Windows (v2.3.231, database v2.108) HHS/NIH, National Library of Medicine AR000018 iile://C:\Documents and Settings\Gham\Application Data\National Library of Medicine\WISER\2.3.231.628... 9/27/20 Acetone ^Key Info Page 1 of Acetone CAS RN: 67-64-1 Key Info FLAMMABLE LIQUIDS (Polar / Water-Miscible) • HIGHLY FLAMMABLE: Easily ignited by heat, sparks or flames • CAUTION: Very low flash point; use of water spray when fighting fire may be inefficient Printed by WISER for Windows (v2.3.231, database v2.108) HHS/NIH, National Library of Medicine AR000019 file://C:\Documents and Settings\Gham\Application Data\National Library of Medicine\WISER\2.3.231.628../ 9/27/20 Acetone - -Hazmat - Explosive Limits / Potential Page 1 of Acetone CAS RIM: 67-64-1 Hazmat - Explosive Limits / Potential Highly flammable liquid. -
Chloroform 18.08.2020.Pdf
Chloroform Chloroform, or trichloromethane, is an organic compound with formula CHCl3. It is a colorless, sweet-smelling, dense liquid that is produced on a large scale as a precursor to PTFE. It is also a precursor to various refrigerants. It is one of the four chloromethanes and a trihalomethane. It is a powerful anesthetic, euphoriant, anxiolytic and sedative when inhaled or ingested. Formula: CHCl₃ IUPAC ID: Trichloromethane Molar mass: 119.38 g/mol Boiling point: 61.2 °C Density: 1.49 g/cm³ Melting point: -63.5 °C The molecule adopts a tetrahedral molecular geometry with C3v symmetry. Chloroform volatilizes readily from soil and surface water and undergoes degradation in air to produce phosgene, dichloromethane, formyl chloride, carbon monoxide, carbon dioxide, and hydrogen chloride. Its half-life in air ranges from 55 to 620 days. Biodegradation in water and soil is slow. Chloroform does not significantly bioaccumulate in aquatic organisms. Production:- In industry production, chloroform is produced by heating a mixture of chlorine and either chloromethane (CH3Cl) or methane (CH4). At 400–500 °C, a free radical halogenation occurs, converting these precursors to progressively more chlorinated compounds: CH4 + Cl2 → CH3Cl + HCl CH3Cl + Cl2 → CH2Cl2 + HCl CH2Cl2 + Cl2 → CHCl3 + HCl Chloroform undergoes further chlorination to yield carbon tetrachloride (CCl4): CHCl3 + Cl2 → CCl4 + HCl The output of this process is a mixture of the four chloromethanes (chloromethane, dichloromethane, chloroform, and carbon tetrachloride), which can then be separated by distillation. Chloroform may also be produced on a small scale via the haloform reaction between acetone and sodium hypochlorite: 3 NaClO + (CH3)2CO → CHCl3 + 2 NaOH + CH3COONa Deuterochloroform[ Deuterated chloroform is an isotopologue of chloroform with a single deuterium atom. -
Valproic Acid and Its Amidic Derivatives As New Antivirals Against Alphaherpesviruses
viruses Review Valproic Acid and Its Amidic Derivatives as New Antivirals against Alphaherpesviruses Sabina Andreu 1,2,* , Inés Ripa 1,2, Raquel Bello-Morales 1,2 and José Antonio López-Guerrero 1,2 1 Departamento de Biología Molecular, Universidad Autónoma de Madrid, Cantoblanco, 28049 Madrid, Spain; [email protected] (I.R.); [email protected] (R.B.-M.); [email protected] (J.A.L.-G.) 2 Centro de Biología Molecular Severo Ochoa, Spanish National Research Council—Universidad Autónoma de Madrid (CSIC-UAM), Cantoblanco, 28049 Madrid, Spain * Correspondence: [email protected] Academic Editor: Maria Kalamvoki Received: 14 November 2020; Accepted: 25 November 2020; Published: 26 November 2020 Abstract: Herpes simplex viruses (HSVs) are neurotropic viruses with broad host range whose infections cause considerable health problems in both animals and humans. In fact, 67% of the global population under the age of 50 are infected with HSV-1 and 13% have clinically recurrent HSV-2 infections. The most prescribed antiherpetics are nucleoside analogues such as acyclovir, but the emergence of mutants resistant to these drugs and the lack of available vaccines against human HSVs has led to an imminent need for new antivirals. Valproic acid (VPA) is a branched short-chain fatty acid clinically used as a broad-spectrum antiepileptic drug in the treatment of neurological disorders, which has shown promising antiviral activity against some herpesviruses. Moreover, its amidic derivatives valpromide and valnoctamide also share this antiherpetic activity. This review summarizes the current research on the use of VPA and its amidic derivatives as alternatives to traditional antiherpetics in the fight against HSV infections. -
The Lysis of Bacterium Coli by Amino-Acids
[510 ] THE LYSIS OF BACTERIUM COLI BY AMINO-ACIDS BY J. GORDON, R. A. HALL AND L. H. STICKLAND The School of Medicine, Leeds (With 2 Figures in the Text) Gordon, Hall & Stickland (1951, 1953) described the kinetics of the lysis by glycine of Bacterium coli suspensions, and the inhibition by various agents of this process. The present paper attempts to correlate this lytic effect with the chemical structure of various amino-acids. MATERIALS AND METHODS Preparation of bacteria Four freshly isolated strains of Bact. coli were grown on the surface of nutrient agar for 16-18 hr. at 37°, and were then washed off with distilled water. These suspensions were filtered through glass wool. The bacteria were washed twice and finally suspended in about ten times their volume of distilled water which was equivalent to a concentration of between 10 and 20 mg. dry weight of cells per ml. Measurement of lysis After the suspensions had been incubated with the amino-acid solutions under test the bacteria were removed by centrifuging at 2500 g. for 20 min. The super- natant fluid was treated with \ volume of 25 % ' w/v' trichloracetic acid solution, the protein precipitate was washed with 5% trichloracetic acid and then the protein was estimated by the biuret method (Robinson & Hogden, 1940). The degree of lysis was expressed as the ratio of the protein liberated into the super- natant fluid to the total soluble protein of the bacterial suspension (Stickland, 1951). Amino-acids used Glycine, DL-alanine, /?-alanine, DL-a-amino-w-butyric acid, DL-a-amino-iso- butyric acid, DL-a-amino-?i-valeric acid, DL-valine, DL-serine, glycine ethyl ester hydrochloride, aceturic acid, glycylglycine and L-glutamic acid were obtained commercially. -
A Facile Profiling Method of Short Chain Fatty Acids Using Liquid
H OH metabolites OH Article A Facile Profiling Method of Short Chain Fatty Acids Using Liquid Chromatography-Mass Spectrometry Ha Eun Song 1, Hyo Yeong Lee 1, Su Jung Kim 1, Sung Hoon Back 2 and Hyun Ju Yoo 1,* 1 Department of Convergence Medicine, Asan Institute for Life Sciences, Asan Medical Center, University of Ulsan College of Medicine, Seoul 05505, Korea 2 School of Biological Sciences, University of Ulsan, Ulsan 44610, Korea * Correspondence: [email protected]; Tel.: +82-02-3010-4029 Received: 27 June 2019; Accepted: 23 August 2019; Published: 28 August 2019 Abstract: Short chain fatty acids (SCFAs) are the main products of dietary fibers that are not digested by the human body, and they have been shown to affect human metabolism and inflammation. The amount of SCFAs in the body is related to many human diseases, and studies have focused on elucidating their roles and target molecules in both metabolic and immune responses. Thus, the quantitation of SCFAs in biological samples becomes crucial in understanding their important roles in the human body. Herein, a facile profiling method of SCFAs using liquid chromatography-tandem mass spectrometry (LC-MS/MS) was developed and then applied to biological samples. C2-C6 SCFAs were derivatized while using 4-acetamido-7-mercapto-2,1,3-benzoxadiazole for 5 min. at room temperature prior to LC-MS/MS analysis, and characteristic fragmentation patterns and increased hydrophobicity after chemical derivatization enabled specific discrimination among 12 SCFAs. Derivatization was fast and reliable, and the reaction products were stable for a week at 4 ◦C. -
Electrocatalytic Oxidation of Cyclic Ketones the Reactions on Electrodes, Which Take Place During the Process, Are Usual for the Mediatory System Nai - M
Electrocatalytic Oxidation of Cyclic Ketones The reactions on electrodes, which take place during the process, are usual for the mediatory system NaI - M. N. Elinson*, S. K. Feducovich, NaOH in methanol and lead to the formation of iodine or A. S. Dorofeev, G. I. Nikishin bromine at the anode and methoxide anions at the N .D. Zelinsky Institute of Organic Chemistry, cathode. Leninsky prospekt 47, 119991 Moscow B-334, Russia Then a-monohalogenation of the enol form of The oxidation of ketones is a way for preparing the ketone takes place. carboxylic acids and their derivatives, bifunctional In the presence of methoxide anions there is an equilibrium between the two possible isomers of compounds such as a-hydroxyketones, diketones and other useful intermediates in organic synthesis. a-halogenoketone 3 posessing either an axial or The formation of adipic acid from cyclohexanone is an equatorial halogen. an important industrial process. a-Halogenoketone 3 thus formed, undergoes reversible The advance of electrooxidation procedures has methoxy anion attack on the carbonyl group with a further provided organic chemists with a synthetic device of intramolecular nucleophilic substitution of the halogen great promise. But in the case of the electrooxidation of and subsequent cyclization to form epoxide 4. O- ketones only some reactions which could provide R O + MeO- R product-selectivity are known. OMe Hal Hal The first attempts of the electrochemical oxidation of 3 A ketones resulted in the formation of a mixture of acids, - OMe O(a ) OMe(e) OMe OMe(e) saturated and unsaturated hydrocarbons, carbon monoxide O MeO- 1 OH and dioxide. -
Electrochemical Haloform Reaction Efficient Transformation of Methyl Ketones to Carboxylates
J. Jpn. Oil Chem. Soc. Vol. 45, No. 2 (1996) 147 ORIGINAL Electrochemical Haloform Reaction Efficient Transformation of Methyl Ketones to Carboxylates Yoshiharu MATSUBARA * 1, Kazuo FUJIMOTO * 1, Hirofumi MAEKAWA * 2 and Ikuzo NISHIGUCHI * 2 * 1 Department of Applied Chemistry, Faculty of Science and Engineering, Kinki University (3-4-1 Kowakae, Higashi-Osaka-shi, Osaka-fu, •§ 577) * 2 Osaka Municipal Technical Research Institute (6-50, 1-Chome, Morinomiya, Jyoto-ku, Osaka-shi, •§ 536) Abstract : Electrolysis of aliphatic, aromatic, and ƒ¿,ƒÀ-unsaturated methyl ketones in an anhydrous alcohol containing sodium or lithium bromide using an undivided cell equipped with carbon rods as the anode and the cathode brought about electrochemical Haloform reaction to give the corresponding car- boxylates in good to excellent yields. The reaction was found to be mediated with bromonium ion, gen- erated by anodic oxidation of bromide ion. Absence of bromoform in the product mixtures of this reac- tion may be attributed to ready reduction of bromoform to highly volatile compounds, which may pro- vide high simplicity of reaction procedure. Facile and efficient introduction of carboalkoxyl groups to aromatic rings and olefinic bonds was ac- complished in two steps through initial Friedel-Crafts acetylation followed by the present electrochemi- cal method. Key words : mediator, methyl ketones, electrolysis, bromonium ion, carboxylates 1 Introduction Haloform reaction has been well known as a method for transformation of methyl ketones to the corresponding carboxylic acids using an aqueous hypohalite solution1) . Synthetic utili- ty of this reaction, however, has been considerably limited owing to use of large amounts of a hazardous halogen and a strong base, troublesome procedure such as separation and pu- rification of the desired carboxylic acid from the resulting haloform, and unsatisfactory yield. -
Valerolactone Hydrogenation Into 1,4-Pentanediol in Milder Reaction Conditions
reactions Article Heterogeneously Catalyzed γ-Valerolactone Hydrogenation into 1,4-Pentanediol in Milder Reaction Conditions Irina Simakova 1,2,* , Yulia Demidova 1,2, Mikhail Simonov 1,2 , Sergey Prikhod’ko 1,2, Prashant Niphadkar 3, Vijay Bokade 3, Paresh Dhepe 3 and Dmitry Yu. Murzin 4,* 1 Boreskov Institute of Catalysis, pr. Lavrentieva, 5, 630090 Novosibirsk, Russia; [email protected] (Y.D.); [email protected] (M.S.); [email protected] (S.P.) 2 Novosibirsk State University, Pirogova 2, 630090 Novosibirsk, Russia 3 CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune 411008, India; [email protected] (P.N.); [email protected] (V.B.); [email protected] (P.D.) 4 Johan Gadolin Process Chemistry Centre, Åbo Akademi University, Biskopsgatan 8, FI-20500 Turku/Åbo, Finland * Correspondence: [email protected] (I.S.); dmurzin@abo.fi (D.Y.M.) Received: 20 September 2020; Accepted: 14 October 2020; Published: 16 October 2020 Abstract: Hydrogenation of γ-valerolactone (GVL) in polar solvents (n-butanol, 1,4-dioxane) to 1,4-pentanediol (PDO) and 2-methyltetrahydrofuran (MTHF) was performed at 363–443 K in a fixed bed reactor under overall H2 pressure of 0.7–1.3 MPa. Preliminary screening in a batch reactior was performed with a series of Ru, Ir, Pt, Co, and Cu catalysts, earlier efficiently applied for levulinic acid hydrogenation to GVL. The fresh catalysts were analyzed by transmission electron microscopy (TEM), X-ray fluorescent analysis (XRF), temperature programmed reduction by H2 (H2-TPR), and N2 physisorption. Cu/SiO2 prepared by reduction of copper hydroxosilicate with chrysocolla mineral structure provided better selectivity of 67% towards PDO at 32% GVL conversion in a continuous flow reactor. -
Laboratory Classes in Bioorganic Chemistry
MINISTRY OF HEALTH OF REPUBLIC OF BELARUS VITEBSK STATE MEDICAL UNIVERSITY LABORATORY CLASSES IN BIOORGANIC CHEMISTRY L.G. Hidranovich, O.A. Khodos ( 2 - e « З Д / ) For Foreign students of the 1-st year Vitebsk 20t£ УДК 54 (042.3/4) ББК 24.239 L.G. Hidranovich, О.Л. Khodos LABORATORY CLASSES IN BIOORGANIC CHEMISTRY for foreign students of the 1-sl year: Manual./ L.G. Hidranovich, O.A. Khodos. - Vitebsk: v s m u , 20i b - 128 p. ( 2 - е м а д д ISBN 978-985-466-5$S‘-3 This issue contains program questions, problems, laboratory' works for the classes in bioorgamc chemistry, examination questions, tests, reference tables.The issue was wrote according to the typical educational program for the students o f higher medical educa tional establishments. Утверждено и рекомендовано к изданию Центральным учебно-научно методическим Советом непрерывного медицинского и фармацевтического образо вания Витебского государственного медицинского университета, 21.04________ 2007 г , протокол №4. ISBN 978-985-466-581-3 У Д К 54 (042.3/4) ББК 24.239 © Гидранович Л.Г., Ходос О А., 20/3 ©УО «Витебский государственный медицинский университет», 20'Й CONTENTS Thematic p!a:: of the lectures. 4 Thematic plan of the laboratory classes. 5 Accident prevention. 6 Theme 1. Classification and FJPAC nomenclature of organic com 7 pounds. Theme 2. Electronic structure of chemical bonds. Inductive and reso 9 nance effects. Theme 3. Stereochemistry of organic compounds. 11 Configuration and conformation of the organic compounds. Theme 4 Acid-base properties of organic compounds. 14 Theme 5. Classification and mechanisms of the reactions in organic 16 chemistry Saturated, unsaturated and aromatic hydrocarbons. -
The Remarkable Effects of Esters of Valeric Acid on Broiler Performance
The remarkable effects of esters of valeric acid on broiler performance hort chain fatty acids are very well- Starter phase Grower phase Finisher phase known molecules that have been (day 0-14) (day 15-28) (day 29-42) routinely used in animal feed for S T-1 - - - decades. Each one has unique characteristics making them the reference to tackle an array T-2 Butyric acid 500g/t Butyric acid 500g/t Butyric acid 250g/t of challenges to the poultry industry. T-3 Butyric acid 500g/t Valeric acid 1500g/t Butyric acid 250g/t Table 1. Experimental treatments. by José M. Ros Felip, Business Development Manager, Perstorp, Sweden. of butyric acid. These observations do not www.perstorp.com come as a surprise to experts, as valeric acid, just like acetic, propionic and butyric acid, occurs naturally in the intestinal lumen by Formic acid is the first choice for feed means of fermentation of non-digestible acidification and sanitisation, propionic acid fibres carried out by intestinal microbiota. is the most efficient mould-inhibitor, butyric acid is the reference in gut health and digestive integrity. All of them have been Star potential in the grower phase Valeric acid is one of the important thoroughly studied and used intensively of broiler production organic acids produced by fermentation in except one, valeric acid (C5), the longest of the intestinal tract of animals and all. That is about to change. It has been Valeric acid has been shown to support humans, and is the key component of decades since a new organic acid for feed broilers in the grower phase when compared ProPhorce Valerins, which has been was introduced.