Rhodophyta) in the Imperial Palace, Tokyo
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Divergence Time Estimates and the Evolution of Major Lineages in The
www.nature.com/scientificreports OPEN Divergence time estimates and the evolution of major lineages in the florideophyte red algae Received: 31 March 2015 Eun Chan Yang1,2, Sung Min Boo3, Debashish Bhattacharya4, Gary W. Saunders5, Accepted: 19 January 2016 Andrew H. Knoll6, Suzanne Fredericq7, Louis Graf8 & Hwan Su Yoon8 Published: 19 February 2016 The Florideophyceae is the most abundant and taxonomically diverse class of red algae (Rhodophyta). However, many aspects of the systematics and divergence times of the group remain unresolved. Using a seven-gene concatenated dataset (nuclear EF2, LSU and SSU rRNAs, mitochondrial cox1, and plastid rbcL, psaA and psbA genes), we generated a robust phylogeny of red algae to provide an evolutionary timeline for florideophyte diversification. Our relaxed molecular clock analysis suggests that the Florideophyceae diverged approximately 943 (817–1,049) million years ago (Ma). The major divergences in this class involved the emergence of Hildenbrandiophycidae [ca. 781 (681–879) Ma], Nemaliophycidae [ca. 661 (597–736) Ma], Corallinophycidae [ca. 579 (543–617) Ma], and the split of Ahnfeltiophycidae and Rhodymeniophycidae [ca. 508 (442–580) Ma]. Within these clades, extant diversity reflects largely Phanerozoic diversification. Divergences within Florideophyceae were accompanied by evolutionary changes in the carposporophyte stage, leading to a successful strategy for maximizing spore production from each fertilization event. Our research provides robust estimates for the divergence times of major lineages within the Florideophyceae. This timeline was used to interpret the emergence of key morphological innovations that characterize these multicellular red algae. The Florideophyceae is the most taxon-rich red algal class, comprising 95% (6,752) of currently described species of Rhodophyta1 and possibly containing many more cryptic taxa2. -
Survey and Distribution of Batrachospermaceae (Rhodophyta) in Tropical, High-Altitude Streams from Central Mexico
Cryptogamie,Algol., 2007, 28 (3): 271-282 © 2007 Adac. Tous droits réservés Survey and distribution of Batrachospermaceae (Rhodophyta) in tropical, high-altitude streams from central Mexico JavierCARMONA Jiménez a* &GloriaVILACLARA Fatjób a A.P. 70-620,Ciudad Universitaria, Coyoacán, 04510. Departamento de Ecología y Recursos Naturales, Facultad de Ciencias, Universidad Nacional Autónoma de México,México,D.F. b Facultad de Estudios Superiores Iztacala. Universidad Nacional Autónoma de México,Tlalnepantla 54000,Estado de México,México. (Received 3 August 2006, accepted 26 October 2006) Abstract – Freshwater Rhodophyta populations from high altitude streams (1,725-2,900 m a.s.l.) in the Mexican Volcanic Belt (MVB), between 18-19° N and 96-100° W, were investigated through the sampling of six stream segments from 1982 to 2006. Three species are documented, Batrachospermum gelatinosum,B. helminthosum and Sirodotia suecica, including their descriptions and physical and chemical water quality data from their environment. Batachospermum helminthosum and S. suecica are reported for the second time in MVB streams, with a first description in detail for the freshwater red algal flora from Mexico. All species were found in tropical climates (two seasons along a year, dry and rainy), at high altitudes (> 1,700 m a.s.l.), mild water temperatures (9.0-20.4°C), circumneutral (pH 6.0-8.2, bicarbonate as the dominant anion), and with a relative low ionic content (salinity 0.1 to 0.2 g l –1, specific conductance 77-270 µS cm –1). Two ecological groups of species were clearly distinguished on the basis of nutrient content. The first group, which includes B. -
Nomenclatural Notes on Some Philippine Species of Freshwater Red Algae (Rhodophyta)
Philippine Journal of Systematic Biology Vol. IV (June 2010) NOMENCLATURAL NOTES ON SOME PHILIPPINE SPECIES OF FRESHWATER RED ALGAE (RHODOPHYTA) LAWRENCE M. LIAO Graduate School of Biosphere Science, Hiroshima University, 1-4-4 Kagamiyama, Higashi-Hiroshima 739-8528, Japan Email: [email protected] INTRODUCTION The study of Philippine freshwater algae has primarily focused on microscopic and planktonic forms such as those of Velasquez (1962), Pantastico (1977), Tamayo-Zafaralla (1998) among others, with little information known about macroscopic forms. Among the larger, benthic forms inhabiting freshwater habitats, seven species in five genera of red algae (Rhodophyta) have so far been documented from the Philippines. Two of these species belong to the Batrachospermaceae as currently circumscribed by Entwisle et al. (2009), with one species Batrachospermum nonocense Kumano et Liao originally described from the Philippines, with its type locality in Nonoc Island, Surigao del Norte province. Another freshwater red alga, Nemalionopsis shawii Skuja, also has a Philippine type locality (Lamao Reserve, Bataan province) and is the generitype species of Nemalionopsis Skuja currently placed within the Thoreaceae, which was recently accommodated into its new segregate order, the Thoreales by Müller et al. (2002). The total number of Philippine freshwater red algae documented to date is low and is likely a product of several factors including poor collection efforts and lack of suitable habitats. Compared to Thailand which has a somewhat parallel history of freshwater red algal research as the Philippines, 26 species in 9 genera have so far been documented as a result of extensive surveys conducted in the western half as well as the southern extremities of the country (Peerapornpisal et al., 2006, Traichaiyaporn et al., 2008). -
The Freshwater Red Algae (Batrachospermales, Rhodophyta) of Africa and Madagascar I
Plant and Fungal Systematics 65(1): 147–166, 2020 ISSN 2544-7459 (print) DOI: https://doi.org/10.35535/pfsyst-2020-0010 ISSN 2657-5000 (online) The freshwater red algae (Batrachospermales, Rhodophyta) of Africa and Madagascar I. New species of Kumanoa, Sirodotia and the new genus Ahidranoa (Batrachospermaceae) Eberhard Fischer1*, Johanna Gerlach2, Dorothee Killmann1 & Dietmar Quandt2* Abstract. Our knowledge of the diversity of African freshwater red algae is rather lim- Article info ited. Only a few reports exist. During our field work in the last five years we frequently Received: 4 Oct. 2019 encountered freshwater red algae in streams in Rwanda and Madagascar. Here we describe Revision received: 11 May 2020 four new species and one new genus of freshwater red algae from the Batrachospermales, Accepted: 11 May 2020 based on morphological and molecular evidence: Kumanoa comperei from the Democratic Published: 2 Jun. 2020 Republic of the Congo and Rwanda is related to K. montagnei and K. nodiflora; Kumanoa Associate Editor rwandensis from Rwanda is related to K. ambigua and K. gudjewga; Sirodotia masoalen Nicolas Magain sis is related to S. huillensis and S. delicatula; and the new genus and species Ahidranoa madagascariensis from Madagascar is sister to Sirodotia, Lemanea, Batrachospermum s.str. and Tuomeya. There is also evidence for the presence of Sheathia, which was recorded as yet-unidentifiable Chantransia stages. These are among the first new descriptions since 1899 from the African continent and since 1964 from Madagascar. A short history of the exploration of freshwater red algae from Africa and Madagascar is provided. All new taxa are accompanied by illustrations and observations on their ecology. -
Batrachospermales, Rhodophyta) in Northeast India and East Nepal
Research Article Algae 2019, 34(4): 277-288 https://doi.org/10.4490/algae.2019.34.10.30 Open Access Diversity of the genus Sheathia (Batrachospermales, Rhodophyta) in northeast India and east Nepal Orlando Necchi Jr.1,*, John A. West2, E. K. Ganesan3,a, Farishta Yasmin4, Shiva Kumar Rai5 and Natalia L. Rossignolo1 1Department of Zoology and Botany, São Paulo State University, Rua Cristóvão Colombo, 2265, 15054-000 S. José Rio Preto, São Paulo, Brazil 2School of Biosciences 2, University of Melbourne, Parkville VIC 3010, Australia 3Instituto Oceanográfico, Universidad de Oriente, Cumaná 6101, Venezuela 4Department of Botany, Nowgong College, Nagaon, 782001, Assam, India 5Department of Botany, Tribhuvan University, Post Graduate Campus, Biratnagar, Nepal Freshwater red algae of the order Batrachospermales are poorly studied in India and Nepal, especially on a molecular basis. During a survey in northeast India and east Nepal, six populations of the genus Sheathia were found and analyzed using molecular and morphological evidence. Phylogenetic analyses based on the rbcL gene sequences grouped all populations in a large clade including our S. arcuata specimens and others from several regions. Sheathia arcuata repre- sents a species complex with a high sequence divergence and several smaller clades. Samples from India and Nepal were grouped in three distinct clades with high support and representing new cryptic species: a clade formed by two samples from India, which was named Sheathia assamica sp. nov.; one sample from India and one from Nepal formed another clade, named Sheathia indonepalensis sp. nov.; two samples from Nepal grouped with sequences from Hawaii and In- donesia (only ‘Chantransia’ stages) and gametophytes from Taiwan, named Sheathia dispersa sp. -
Rhodophyta) of The
! !" "! !"##$%&'(&)&"('*+'&,$'+#$(,-)&$#'#$.')/0)/'.12$#(1&3'45,*.*6,3&)7'*+'&,$' #! 8+#19)%'9*%&1%$%&'1%9/".1%0'.$(9#16&1*%'*+'%$-'&):)'4;)&#)9,*(6$#<)/$(7' $! ' %! ' &! ! '! #!"#$"%$%%&&'#()!'%(*#"(+"#%)%%*",-*."#$'%#$)/"-0%*%%#1*/)$)%%"#$%+*.2"#%$%%,'/!&" (! !"!"#$%&'"(&)*+),(-.%*('"(&$/)$(0)1/$(&)2.*/*345)1*%&"%)6$//5)78.*)9(.-"%:.&45);&8"(:5)765) )! <=>?@5)9A;) *! 2Unit for Environmental Science and Management, North-West University, Potchefstroom, 2520 "+! South Africa ""! 3South African Institute for Aquatic Biodiversity (SAIAB), Makhanda, 6140, South Africa "#! 4Faculty of Science, Department of Botany, University of Lagos, Akoka, Nigeria. "$! B))-../01-23425"6789-.":;40<=946>-94-%/37?) "%! ) "&! ) "'! ) "(! @722425"848A/B"C./09D68/."@9-3-19E86"34;/.048E"42"#F.4=6" ")! " "*! " #+! ! #"! ! ##! ! #$! ! ! ! G" #%! #1/(."3("" #&! C./09D68/."./3"6A56/"96;/"H//2"=-AA/=8/3"-2"89/"#F.4=62"=-2842/28"042=/"89/"/6.AE"!IJJ0%" #'! K-D/;/.'"89/"=-AA/=84-20"96;/"H//2"016.0/"623"5/-5.6194=6AAE"./08.4=8/3%"*9/"1./0/28"0873E" #(! 0-7598"8-"H.425"8-5/89/."42F-.L684-2"F.-L"89/"A48/.687./'"9/.H6.47L"01/=4L/20"623"2/DAE" #)! =-AA/=8/3"01/=4L/20"8-"1.-;43/"62"71368/3"600/00L/28"-F"89/"F./09D68/."./3"6A56A"34;/.048E"-F"89/" #*! #F.4=62"=-2842/28"D489"6"F-=70"-2"89/"01/=4/0".4=9"M68.6=9-01/.L6A/0%"NO#"0/P7/2=/"3686"623" $+! L-.19-A-54=6A"-H0/.;684-20"D/./"=-237=8/3"F-."./=/28AE"=-AA/=8/3"01/=4L/20%"C.-L"89/0/" $"! 626AE0/0'"F-7."2/D"86Q6"6./"1.-1-0/3B"CD'$(*$)E*DF'$(..5)A8"$&8.$)'D%#8"4.5)A.%*0*&.$) $#! G"(("04.)623"89/"F-.L"86Q-2)RH8$(&%$(:.$)$ID%"$S%"NO#"0/P7/2=/"3686"963"H//2"1./;4-70AE" -
A Literature Review on the Poor Knights Islands Marine Reserve 30
4. Marine flora There is a rich abundance and diversity of macroalgae at the Poor Knights Islands with 121 species of algae recorded from the islands. A thorough taxonomic survey of the macroalgae of the Poor Knights Islands has not been conducted, and therefore this is likely to be a conservative estimate of the number of macroalgal species present. Some of the lushest kelp beds in New Zealand can be found at Nursery Cove and Cleanerfish Bay and subtidal reefs are covered with the golden seawrack, Carpophyllum angustifolium, the strap kelp, Lessonia variegata, and the common kelp, Ecklonia radiata (Ayling & Schiel, 2003). The marine flora of the Poor Knights Islands is an unusual mixture of species common to northeastern New Zealand such as C. angustifolium and Gigartina alveata, subtropical species such as Pedobesia clavaeformis, Microdictyon umbilicatum, and Palmophyllum umbracola, and southern New Zealand species, such as Durvillea antarctica and Caulerpa brownii. Bull kelp (D. antarctica) is a common species in southern New Zealand, but is not found in the North Island between North Cape and East Cape with the exception of some exposed offshore islands including the Poor Knights Islands. It is possible that at high levels of wave exposure D. antarctica can withstand higher water temperatures (Creese & Ballantine, 1986). Several rare species of macroalgae are found at the Poor Knights Islands. In 1994 the rare, endemic red alga, Gelidium allanii, was discovered with a sample of Pterocladia capillacea taken from the Poor Knights Islands in 1978. Prior to 1994 G. allanii had only been recorded from the type locality in the Bay of Islands. -
Freshwater Algae in Britain and Ireland - Bibliography
Freshwater algae in Britain and Ireland - Bibliography Floras, monographs, articles with records and environmental information, together with papers dealing with taxonomic/nomenclatural changes since 2003 (previous update of ‘Coded List’) as well as those helpful for identification purposes. Theses are listed only where available online and include unpublished information. Useful websites are listed at the end of the bibliography. Further links to relevant information (catalogues, websites, photocatalogues) can be found on the site managed by the British Phycological Society (http://www.brphycsoc.org/links.lasso). Abbas A, Godward MBE (1964) Cytology in relation to taxonomy in Chaetophorales. Journal of the Linnean Society, Botany 58: 499–597. Abbott J, Emsley F, Hick T, Stubbins J, Turner WB, West W (1886) Contributions to a fauna and flora of West Yorkshire: algae (exclusive of Diatomaceae). Transactions of the Leeds Naturalists' Club and Scientific Association 1: 69–78, pl.1. Acton E (1909) Coccomyxa subellipsoidea, a new member of the Palmellaceae. Annals of Botany 23: 537–573. Acton E (1916a) On the structure and origin of Cladophora-balls. New Phytologist 15: 1–10. Acton E (1916b) On a new penetrating alga. New Phytologist 15: 97–102. Acton E (1916c) Studies on the nuclear division in desmids. 1. Hyalotheca dissiliens (Smith) Bréb. Annals of Botany 30: 379–382. Adams J (1908) A synopsis of Irish algae, freshwater and marine. Proceedings of the Royal Irish Academy 27B: 11–60. Ahmadjian V (1967) A guide to the algae occurring as lichen symbionts: isolation, culture, cultural physiology and identification. Phycologia 6: 127–166 Allanson BR (1973) The fine structure of the periphyton of Chara sp. -
Diversity and Habitat Characteristics of Freshwater Red Algae (Rhodophytes) in Some Water Resources of Thailand
ScienceAsia 32 Supplement 1 (2006): 63-70 doi: 10.2306/scienceasia1513-1874.2006.32(s1).063 Diversity and Habitat Characteristics of Freshwater Red Algae (Rhodophytes) in Some Water Resources of Thailand Yuwadee Peerapornpisal,a* Muntana Nualcharoen,b Sutthawan Suphan,a Tatporn Kunpradid,c Thanitsara Inthasotti,a Ruttikan Mungmai,a Lanthong Dhitisudh,a Morakot Sukchotiratanaa and Shigeru Kumanod a Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand. b Department of Biology, Faculty of Science and Technology, Rajabhat Phuket University, Phuket 83000, Thailand. c Department of Biology, Faculty of Science and Technology, Rajabhat Chiang Mai University, Chiang Mai 50000, Thailand. d National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Irabaki 305-0053, Japan. * Corresponding author, E-mail: [email protected] ABSTRACT: The freshwater red algae in some areas of the northern, central, western and southern regions of Thailand were investigated together with water quality and some ecological aspects. Five orders, 6 families, 9 genera and 26 species were found. The most diverse genus was Batrachospermum which had 9 species, followed by Thorea, Bostrychia, Audouinella and Compsopogon each with 3 species and Nemalionopsis with 2 species. Genera represented as 1 species only were Sirodotia, Caloglossa and Compsopogonopsis. Most of the freshwater red algae were observed in water of clean to moderate quality. However, some species were in the clean water e.g. Batrachospermum boryanum Sirodot, B.gelatinosum (Linnaeus) de Candolle and B. macrosporum Montagne but some species were in moderate to polluted water e.g. Compsopogon coeruleus (Balbis) Montagne and Audouinella glomerata Jao. The latter species had a wide tolerance range i.e. -
Phylogenetic Affinities of Australasian Specimens Of
PHYLOGENETIC AFFINITIES OF AUSTRALASIAN SPECIMENS OF BATRACHOSPERMUM (BATRACHOSPERMALES, RHODOPHYTA) INFERRED FROM MOLECULAR AND MORPHOLOGICAL DATA A thesis presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Master of Science Sarah A. Stewart August 2006 This thesis entitled PHYLOGENETIC AFFINITIES OF AUSTRALASIAN SPECIMENS OF BATRACHOSPERMUM (BATRACHOSPERMALES, RHODOPHYTA) INFERRED FROM MOLECULAR AND MORPHOLOGICAL DATA by SARAH A. STEWART has been approved for the Department of Environmental and Plant Biology and the College of Arts and Sciences of Ohio University by Morgan L. Vis Associate Professor of Environmental and Plant Biology Benjamin M. Ogles Dean, College of Arts and Sciences Abstract STEWART, SARAH A., M.S., August 2006, Plant Biology PHYLOGENETICU AFFINITIES OF AUSTRALASIAN SPECIMENS OF BATRACHOSPERMUM (BATRACHOSPERMALES, RHODOPHYTA) INFERRED FROM MOLECULAR AND MORPHOLOGICAL DATA U (67 pp.) Director of Thesis: Morgan L. Vis The phylogenetic affinities of five Australasian species of the freshwater red algal genus Batrachospermum were investigated using molecular and morphometric data. Specimens attributed to B. pseudogelatinosum, B. campyloclonum, B. kraftii, B. theaquum and B. bourrellyi, were collected from eastern Australia, Tasmania, New Caledonia and New Zealand. DNA sequence data from the plastid rbcL gene was used to infer interspecies relationships for all taxa. The mitochondrial cox2-3 gene spacer region was utilized to infer the intraspecific relationships among specimens of B. pseudogelatinosum, B. campyloclonum and B. bourrellyi. Two clades were resolved for B. pseudogelatinosum specimens in the rbcL, with B. bourrellyi placed equivocally as sister or within the clade. B. theaquum formed a separate clade in all analyses. -
Supplementary Materials: Figure S1
1 Supplementary materials: Figure S1. Algal communities in Luhuitou reef in rainy season 2016: (A−J) Transect 1, heavily polluted area; (K−M) Transect 2, moderately polluted area. (A) The upper intertidal monodominant community with the dominance of the brown crust alga Neoralfsia expansa; insert: the dominant alga N. expansa. (B) The upper intertidal monodominant community of algal turf, the red alga Polysiphonia howei; insert: the dominant alga P. howei. (C) The upper intertidal monodominant community of algal turf, the green alga Ulva prolifera; insert: the dominant alga U. prolifera. (D) The upper intertidal monodominant algal turf community of the green alga Ulva clathrata; insert: the dominant alga U. clathrata. (E) The upper intertidal bidominant community of the red alga P. howei and the green alga Cladophoropsis sundanensis insert: the dominant alga C. sundanensis. (F) The middle intertidal monodominant community of the red crust alga Hildenbrandia rubra. (G) The middle intertidal monodominant community of the brown crust alga Ralfsia verrucosa. (H) The middle intertidal monodominant algal turf community with the dominance of the red fine filamentous alga Centroceras clavulatum. (I) The lower intertidal bidominant community of the turf-forming red algae C. clavulatum and Jania adhaerens; insert: the dominant alga J. adhaerens. (J) Monodominant community of the red alga Grateloupia filicina densely overgrown with the epiphyte Ceramium cimbricum in the middle part of concrete chute of outlet from fish farm, and bidominant community of the green algae Trichosolen mucronatus and U. flexuosa at marginal parts of the chute; inserts: (a) the dominant U. flexuosa; (b) T. mucronatus; (c) Grateloupia filicina. -
The Marine Life Information Network® for Britain and Ireland (Marlin)
The Marine Life Information Network® for Britain and Ireland (MarLIN) Assessment of the Potential Impacts of Coasteering on Rocky Intertidal Habitats in Wales Report to Cyngor Cefn Gwlad Cymru / Countryside Council for Wales Contract no. NWR012 Dr Harvey Tyler-Walters FINAL REPORT March 2005 Reference: Tyler-Walters, H., 2005. Assessment of the Potential Impacts of Coasteering on Rocky Intertidal Habitats in Wales. Report to Cyngor Cefn Gwlad Cymru / Countryside Council for Wales from the Marine Life Information Network (MarLIN). Marine Biological Association of the UK, Plymouth. [CCW Contract no. NWR012] Assessment of the potential impacts of coasteering in Wales MarLIN 2 Assessment of the potential impacts of coasteering in Wales MarLIN The Marine Life Information Network® for Britain and Ireland (MarLIN) Assessment of the Potential Impacts of Coasteering on Rocky Intertidal Habitats in Wales Contents CONTRACT SPECIFICATION ..............................................................................................4 EXECUTIVE SUMMARY .......................................................................................................7 1. AIMS AND TIMETABLE...............................................................................................11 2. METHODOLOGY..........................................................................................................11 2.1. LITERATURE REVIEW .................................................................................................11 2.2. IDENTIFICATION OF POTENTIALLY VULNERABLE