Curriculum Vitae Julio BJ Harvey, PhD Ecology and Evolutionary Biology http://www.mbari.org/staff/jharvey/ [email protected] (831) 775-1789

Research Interests Marine ecosystem biology and conservation, plankton ecology, robotic sampling platform development, molecular detection, invasive and harmful species, fisheries resource management, evolutionary genetics, coevolution of marine symbioses.

Experience (2008–Present) Senior Research Technician, Monterey Bay Aquarium Research Institute (http://www.mbari.org/), Moss Landing, California. Ecology of marine zooplankton and phytoplankton. Development of molecular genetic detection methods for use with robotic water sampling platforms. Genetics of deep-sea invertebrates. Conception, planning and coordination of academic research projects. Data analysis, manuscript authorship and peer-reviewed publication. Personnel training, student mentorship and laboratory management.

(2007–2008) Director of Science, FishWise (http://www.fishwise.org/), Santa Cruz, California. Scientific advising, research and personnel management. Research for and authorship of sustainability reports for commercial seafood species, fisheries and aquaculture operations. Development and maintenance of a sustainability ranking system for seafood products, analysis and presentation of seafood sales data, staff training and public outreach.

(2004–2006) Research Scientist, Engineer, University of Washington (http://www.washington.edu/) and U.S. Geological Survey Biological Research Discipline Western Fisheries Research Center (http://wfrc.usgs.gov/), Seattle, Washington. Invasive planktonic species research. Design and application of molecular technologies to detect invasive and native marine species present in ballast and surface waters.

(2000–2004) PhD Candidate, University of California Santa Cruz. Studies on macro- algal (Sargassaceae) coevolution with the endophytic irritans. Morphologically cryptic speciation, phylogenetic species recognition and geographic mosaics of coevolution. Ecological data and specimen collection from intertidal and Macrocystis kelp forest communities.

(1999–2004) Graduate Research Assistant and Laboratory Manager, University of California Santa Cruz. Research project conception, planning and coordination. Data analysis, manuscript authorship and peer-reviewed publication. Personnel training, student mentorship and laboratory management.

Education 2004 University of California Santa Cruz, PhD, Ecology and Evolutionary Biology

1996 University of California Berkeley, BS, Integrative Biology

1994–1995 Lund University, Sweden, UC Education Abroad Program

Teaching University of California, Santa Cruz 2004 Instructor: Marine Biology. Putney Student Travel Excel program. 2001 Graduate Teaching Assistant: Biology 80J, The Biology of HIV and AIDS. 1998, 2000–2003 Graduate Teaching Assistant: Biology187/287L, Biotechnology. 1999–2001 Graduate Teaching Assistant: Biology 170, Marine Botany. 1999 Graduate Teaching Assistant: Biology 20c, Evolution and Ecology.

Funding Monterey Bay Aquarium Research Institute David and Lucile Packard Foundation US Geological Survey Biological Resources Discipline University of Washington Department of Biology University of California Santa Cruz Chancellor’s Office Ethyl M Myers Trust Friends of Long Marine Lab

Publications McCann M, Schramm R, Cline D, Michisaki R, Harvey J, Ryan J (2014). Using STOQS (The spatial temporal oceanographic query system) to manage, visualize, and understand AUV, glider, and mooring data. Autonomous Underwater Vehicles (AUV), Institute for Electrical and Electronics Engineers Oceanic Engineering Society Meeting, Oxford, Massachusetts. http://dx.doi.org/10.1109/auv.2014.7054414

Ryan JP, Harvey JBJ, Zhang Y, Woodson CB (2014). Distributions of invertebrate larvae and phytoplankton in a coastal upwelling system retention zone and peripheral front. Journal of Experimental Molecular Biology and Ecology 459: 51–60. http://dx.doi.org/10.1016/j.jembe.2014.05.017

Ryan JP, McManus MA, Kudela RM, Lara Artigas M, Bellingham JG, Chavez FP, Doucette G, Foley D, Godin M, Harvey JBJ, Marin III R, Messié M, Mikulski C, Pennington T, Py F, Rajan K, Shulman I, Wang Z, Zhang Y (2014). Boundary influences on HAB phytoplankton ecology in a stratification-enhanced upwelling shadow. Deep-Sea Research II 101: 63–79. http://dx.doi.org/10.1016/j.dsr2.2013.01.017

Harvey JBJ (2014). A 96–well plate format for detection of marine zooplankton with the sandwich hybridization assay. In: Stricker, S.A. and D. Carroll (Eds.), Methods in Molecular Biology: Developmental biology of the sea urchin and other marine invertebrates. Humana Press Inc., New York. http://dx.doi.org/10.1007/978-1-62703- 974-1_18

Das J, Harvey JBJ, Py F, Vathsangam H, Graham R, Rajan K, and Sukhatme GS (2013). Hierarchical probabilistic regression for AUV-based adaptive sampling of marine phenomena. Proceedings of the 2013 Institute for Electrical and Electronics Engineers International Conference on Robotics and Automation, Karlsruhe, Germany. http://dx.doi.org/10.1109/icra.2013.6631377

Harvey JBJ, Djunaedi AF and Vrijenhoek RC (2013). Validation of a sandwich hybridization assay for marine copepod detection. Journal of Experimental Molecular Biology and Ecology 446: 306–310. http://dx.doi.org/10.1016/j.jembe.2013.06.005

Johnson SB, Won Y-J, Harvey JBJ and Vrijenhoek RC (2013). A hybrid zone between Bathymodiolus mussel lineages from eastern Pacific hydrothermal vents. BMC Evolutionary Biology 13: 21. http://dx.doi.org/10.1186/1471-2148-13-21

Zhang Y, Ryan JP, Bellingham JG, Harvey JBJ and McEwen RS (2012). Autonomous detection and sampling of water types and fronts in a coastal upwelling system by an autonomous underwater vehicle. Limnology Oceanography: Methods 10: 934–951. http://dx.doi.org/10.4319/lom.2012.10.934

Harvey JBJ, Zhang Y and Ryan JP (2012). AUVs for ecological studies of marine plankton communities: Intelligent algorithms on Dorado and Tethys AUVs enable precise water sampling for plankton research. Sea Technology September 2012: 51–54.

Harvey JBJ, Ryan JP, Marin III R, Preston CM, Alvarado N, Scholin CA and Vrijenhoek RC (2012). Robotic sampling, in situ monitoring and molecular detection of marine zooplankton. Journal of Experimental Molecular Biology and Ecology 413: 60– 70. http://dx.doi.org/10.1016/j.jembe.2011.11.022

Lundsten L, Schlining KL, Frasier K, Johnson SB, Kuhnz L, Harvey JBJ, Clague G and Vrijenhoek RC (2010). Time-series analysis of six whale fall communities in Monterey Bay, California, USA. Deep Sea Research I 57: 1573–1584. http://dx.doi.org/10.1016/j.dsr.2010.09.003

Ryan JP, Johnson SB, Sherman A, Rajan K, Py F, Thomas H, Harvey JBJ, Bird L, Paduan JD and Vrijenhoek RC (2010). Mobile autonomous process sampling within coastal ocean observing systems. Limnology and Oceanography Methods 8: 394–402. http://dx.doi.org/10.4319/lom.2010.8.394

Harvey JBJ and Goff LJ (2010). Genetic covariation of the marine fungal symbiont Haloguignardia irritans (, Pezizomycotina) with its algal hosts Cystoseira and Halidrys (Phaeophyceae, Fucales) along the west coast of North America. Fungal Biology 114: 82–95. http://dx.doi.org/10.1016/j.mycres.2009.10.009

Harvey JBJ, Hoy MS and Rodriguez R (2009). Molecular detection of native and invasive marine invertebrate larvae present in ballast and open water environmental samples collected in Puget Sound. Journal of Experimental Marine Biology and Ecology 369: 93–99. http://dx.doi.org/10.1016/j.jembe.2008.10.030

Harvey JBJ and Goff LJ (2006). A reassessment of species boundaries in Cystoseira and Halidrys (Fucales, Phaeophyceae) along the North American west coast. Journal of Phycology 42: 707–720. http://dx.doi.org/10.1111/j.1529-8817.2006.00215.x

Presentations 2015 University of California Santa Cruz Ocean Sciences Department. Invited seminar speaker. Harvey JBJ. Robotic and molecular approaches to the study of plankton ecology in coastal environments.

2015 ASLO Ocean Sciences Meeting, Granada, Spain. Harvey JBJ, Johnson SB, McCann MP and Vrijenhoek RC. Molecular versus morphological methods: Identifying zooplankton collected in plankton net tows.

2014 NOAA Southwest Fisheries Science Center, Santa Cruz, California. Invited seminar speaker. Harvey JBJ. Molecular detection of marine zooplankton and adaptive sampling of nearshore environments with an autonomous underwater vehicle.

2014 Moss Landing Marine Laboratories, Moss Landing, California. Invited seminar speaker. Harvey JBJ. Adaptive sampling of marine plankton and contextual environmental data with an autonomous underwater vehicle.

2014 ASLO Ocean Sciences Meeting, Honolulu, Hawaii. Harvey JBJ, Ryan JP, Zhang Y, McCann MP and Vrijenhoek RC. Adaptive sampling of marine zooplankton and contextual environment with an autonomous underwater vehicle.

2013 US Geological Survey Pacific Coastal and Marine Science Center, Santa Cruz, California. Invited seminar speaker. Harvey JBJ. Advances in marine plankton ecology — detection, quasi-Lagrangian tracking and high-resolution adaptive sampling of physical and biological phenomenon with and autonomous underwater vehicle.

2013 ASLO Aquatic Sciences Meeting, New Orleans, Louisiana. Harvey JBJ, Ryan JP and Zhang Y. Autonomous detection, Lagrangian tracking, and sampling of coastal upwelling fronts for targeted studies of plankton ecology.

2012 10th International Larval Biology Symposium, Berkeley, California. Harvey JBJ, Ryan JP and Zhang Y. Autonomous, robotic collection and molecular detection of invertebrate larvae from surface waters of Monterey Bay, California.

2012 ASLO Aquatic Sciences Meeting, Salt Lake City, Utah. Harvey JBJ, Ryan JP, Zhang Y, Marin III R, Rajan K, Bellingham JG, McManus MA, Doucette JG, Chavez FP and Scholin CA. An Interdisciplinary, multi-scale approach to monitoring the development and succession of harmful algal bloom communities in the Monterey bay.

2011 ASLO Aquatic Sciences Meeting, San Juan, Puerto Rico. Harvey JBJ, Ryan JP, Marin III R, Robidart J, Preston C, Alvarado N, Zhang Y, McEwen R, Py F, Bellingham JG, Rajan K, Chavez F, Scholin CA and Vrijenhoek RC. Two robotic platforms for molecular detection of marine zooplankton, phytoplankton, bacterioplankton and HAB phycotoxins: A multi-trophic level approach.

2011 AGU Fall Meeting, San Francisco, California. Zhang Y, Ryan J, Bellingham JG, Harvey JBJ, McEwen R, Chavez F and Scholin CA. Classification of water masses and targeted sampling of ocean plankton populations by an autonomous underwater vehicle.

2011 6th Symposium on Harmful Algae in the U.S., Austin, Texas. Birch J, Harvey JBJ, Ryan J, Preston C, Marin III R, Demir E, Roman B, Jensen S, Pargett D, Doucette G, Chavez F and Scholin CA. Sampling harmful algal blooms on the fly: Using an array of ocean observing tools to track suspected harmful algal blooms in real-time.

2010 17th International Conference on Aquatic Invasive Species, San Diego, California. Invited Speaker: Molecular Techniques and Applications to AIS Monitoring and Detection. Harvey JBJ, Marin III R, Ryan JP, Alvarado N, Johnson SB, Preston C, Scholin CA and Vrijenhoek RC. Using two robotic platforms developed at the Monterey Bay Aquarium Research Institute (MBARI) for molecular detection and monitoring of marine invertebrate larvae and major copepod groups in situ.

2010 AGU Fall Meeting, San Francisco, California. Zhang Y, McEwen R, Ryan JP, Bellingham JG, Harvey JBJ and Vrijenhoek RC. Acquiring peak samples from phytoplankton thin layers and intermediate nepheloid layers by an autonomous underwater vehicle with adaptive triggering.

2010 FORAMS International Symposium on Foraminifera, Bonn, Germany. McGann M, Vrijenhoek RC, Johnson S, Harvey JBJ, Paull CK, Ussler III W and Lundsten L. Foraminiferal response to whalefalls in the northeastern Pacific Ocean.

2009 6th International Conference on Marine Bioinvasions, Portland, Oregon. Invited Speaker: Advances in Detection — the development of molecular tools for detection and monitoring. Harvey JBJ, Alvarado N, Johnson S, Marin III R, Preston C, Ryan JP, Scholin CA and Vrijenhoek RC. Molecular detection of marine invertebrate larvae and major copepod groups in situ using robotic devices developed at the Monterey Bay Aquarium Research Institute (MBARI).

2008 8th International Larval Biology Symposium IPIMAR, Lisbon, Portugal. Harvey JBJ, Hoy M and Rodriguez R. Molecular detection of native and invasive invertebrate larvae from ballast and open waters.

2006 14th International Conference on Aquatic Invasive Species, Key Biscayne, Florida. Harvey JBJ, Rodriguez R and Hoy M. A molecular diagnostic approach to the detection and management of marine invasive species from ballast water.

2005 10th Annual National Hispanic Sustainable Energy and Environmental Conference, Seattle, Washington. Invited Speaker. Harvey JBJ. Water is life: Preserving and managing this vital resource for the future.

2005 Puget Sound Georgia Basin Research Conference, Seattle, Washington. Harvey JBJ, Rodriguez R, Hoy M, Redman R and Elder N. Development of molecular diagnostic tools to assess the introduction, establishment and ecology of invasive species in Puget Sound.

2002 Annual meeting of the Phycological Society of America (PSA) and Botanical Society of America (BSA), Madison, Wisconsin. Harvey JBJ and Goff LJ. Intraspecific genetic variation in H. irritans, a fungal endosymbiont of marine brown algae on the North American Pacific coast.

2002 Annual meeting of the Phycological Society of America (PSA) and Botanical Society of America (BSA), Madison, Wisconsin. Harvey JBJ and Goff LJ. 18S based and intraspecific ITS sequence variation in the marine fungal endosymbiont Haloguignardia irritans infecting Cystoseira osmundacea along the Californian coast.

1999 XVI International Botanical Congress, St. Louis, Missouri. Hofstra, TS and Harvey JBJ. Amplification and sequencing of eubacterial 16S rDNA from wetwood of black cottonwood.

References available upon request