CHAPTER0 4 © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT Forvirus SALE OR Distributionreplication Cyclesnot for SALE OR DISTRIBUTION

Total Page:16

File Type:pdf, Size:1020Kb

CHAPTER0 4 © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT Forvirus SALE OR Distributionreplication Cyclesnot for SALE OR DISTRIBUTION CHAPTER0 4 © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FORVirus SALE OR DISTRIBUTIONReplication CyclesNOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC Some human and animal virusesNOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION are grown in tissue culture cells in vitro. This researcher is seeding dishes of tissue culture cell monolayers.© Jones The monolayers & Bartlett are Learning, LLC © Jones & Bartlett Learning, LLC grownNOT in a CO2 FOR incubator SALE before OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION the cells are infected with a laboratory strain of virus. Viruses that can be grown in cell cultures © Jones &can Bartlett be well characterized Learning, in the LLC © Jones & Bartlett Learning, LLC NOT FORresearch SALE laboratory. OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION o u t l i n e © Jones & BartlettIn the struggleLearning, LLC4.1 One-Step Growth© Curves Jones & Bartlett4.3 Learning, The Error-Prone LLC RNA “ Polymerases: Genetic Diversity NOT FORfor SALE survival, OR DISTRIBUTION the 4.2 Key Steps of theNOT Viral FOR SALE OR DISTRIBUTION Replication Cycle 4.4 Targets for Antiviral Therapies fittest win out at 1. Attachment (Adsorption) RNA Virus Mutagens: A New Class the expense of 2. Penetration (Entry) of Antiviral Drugs? their rivals © Jones & Bartlett 3. Uncoating Learning, (Disassembly LLC Virus© Fil Jonese 4-1: How& Bartlett Are Cellular Learning, LLC NOT FOR SALEand OR Localization) DISTRIBUTION ReceptorsNOT Used FOR for ViralSALE OR DISTRIBUTION because they Attachment ­Discovered? 4. Types of Viral Genomes and succeed in adapt- Their Replication Virus File 4-2: Unraveling the Life Cycle of Mimivirus ing themselves 5. Assembly © Jones & Bartlett Learning, LLC © Jones & Vi rusBartlett File 4-3 Learning,: Stamping DownLLC 6. Maturation Flu Viruses bestNOT to theirFOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION 7. Release Refresher: Molecular Biology environment.” Charles Darwin © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION 67 2ND REVISE © Jones & Bartlett Learning, LLC. NOT FOR SALE OR DISTRIBUTION. CASE0STUDY:0 HUMAN0METAPNEUMOVIRUS © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION The campus day care was recently closed during the samples are sent to diagnostic laboratories, and a peak of the winter flu season because many of the lesser percentage in adults. young children were sick with a lower respiratory Both hMPV and RSV cause upper and lower tract infection. An email announcement was sent respiratory tract infections associated with serious to all students,© Jones faculty, &and Bartlett staff at the Learning, college that LLC illness in the young, immunosuppressed,© Jones & Bartlett elderly, Learning, LLC stated the closureNOT wasFOR due SALE to a metapneumovirus OR DISTRIBUTION and chronically ill. CommonNOT FOR symptoms SALE includeOR DISTRIBUTION outbreak. The announcement briefed the campus cough, fever, wheezing or exacerbation of asthma, community with information about human meta- and rhinorrhea (runny nose). It can produce se- pneumonoviruses (hMPVs). vere enough symptoms to cause intensive care The announcement stated that hMPV was a admission and ventilator support. Healthy adults © Jonesnewly & identified Bartlett respiratory Learning, tract LLC pathogen discov- can get© aJones mild form & Bartlettof the disease Learning, that is character- LLC NOTered FOR in theSALE Netherlands OR DISTRIBUTION in 2001. New tests confirm ized byNOT a cough, FOR hoarseness,SALE OR congestion,DISTRIBUTION runny that it is one of the most significant and common nose, and sore throat. viral infections in humans. It is clinically indistin- Members of the campus day care staff were guishable from a viral relative known as respiratory doing their best to limit the epidemic spread of the syncytial virus (RSV). Both RSV and hMPV infec- hMPV outbreak at the center. Primary care physi- © Jones & Bartletttions Learning, occur during LLC the winter. hMPV may account© Jones cians& Bartlett need up-to-date Learning, knowledge LLC and heightened NOT FOR SALE ORfor 2% DISTRIBUTION to 12% or more of previously unexplainedNOT FORawareness SALE OR to recognizeDISTRIBUTION this new viral disease in pediatric lower respiratory infections for which patients. n Chapter© Jones2, you learned & Bartlett that viruses Learning, are de- LLC animals were difficult© to Jones work with & Bartlettand expensive Learning, LLC pendentNOT upon hostFOR cells SALE for their OR reproduction, DISTRIBUTION to maintain. AnotherNOT drawback FOR was SALE that animals OR DISTRIBUTION Iyet to do so viruses must overcome certain cel- were not very permissive to infection with human lular constraints. Only those viruses that have viruses due to the species barrier and the animal been able to adapt to their hosts have been able to immune response. exist in nature. The previous chapter focused on Enders, Weller, and Robbins won the 1954 © Jonestaxonomy & Bartlett and structure Learning, of viruses LLC and in sum- Nobel© Prize Jones in Physiology & Bartlett or Medicine Learning, for theLLC cul- NOTmary FOR stated SALE that OR several DISTRIBUTION different virus families tivationNOT of FORpoliovirus SALE in nonnervousOR DISTRIBUTION tissue cul- cause similar viral disease syndromes. tures (human embryonic skin and muscle cells). This chapter focuses on experiments such as Their observations and procedures used to grow one-step growth curves, which are used to viruses in vitro contributed to the refinement of study virus–host interactions. These studies have tissue culture techniques and played a monumental © Jones & Bartlettpro Learning, vided information LLC about the events that ©occur Jones role& Bartlett in the development Learning, of LLC vaccines against polio- NOT FOR SALE ORat each DISTRIBUTION step of the infection cycle (attachmentNOT, FORvir SALEus in the OR 1950s DISTRIBUTION (Salk vaccine) and 1960s (Sabin penetration, uncoating, replication, assembly, vaccine). maturation, and release), including the intricate One-step or single-step growth curve ex- details of the strategies that animal and human periments are used to study a single replication viruses use to express and replicate their diverse cycle of viruses. Max Delbruck developed the one- genomes. © Jones & Bartlett Learning, LLC step growth curve experiment© Jones &while Bartlett using Learning, an LLC NOT FOR SALE OR DISTRIBUTIONEscherichia coli-T4 bacterialNOT system, FOR which SALE gave OR faster DISTRIBUTION experimental results than did traditional methods. 4.1 One-Step Growth With the advent of cell culture systems, these ex- periments were carried out with viruses that infect Curves tissue culture cells. These experiments are per- © Jones & Bartlett Learning, LLC formed© Jonesin special & cell Bartlett culture facilities.Learning, LLC NOTVirologists FOR SALE could OR not DISTRIBUTION study animal and human Briefly,NOT FOR monolayers SALE OR(or cellDISTRIBUTION suspensions in viruses well in the laboratory before tissue cul- liquid medium) of tissue culture cells such as mon- ture methods were developed by John F. Enders, key kidney cells are allowed to adhere and form Thomas H. Weller, and Frederic C. Robbins in the monolayers on the bottom of plastic dishes. The late 1940s. Before their work, viruses were injected monolayers of cells are subsequently infected with © Jones & Bartlettinto Learning, animals and LLC tissues were analyzed for© theJones the& Bartlett virus of choice.Learning, They LLCare infected at a high NOT FOR SALE ORpathological DISTRIBUTION signs of viral infection. ExperimentalNOT FORmultiplicity SALE OR ofDISTRIBUTION infection (MOI) to ensure that 68 ChapteR 4 Virus0Replication0Cycles 2ND REVISE 2ND REVISE © Jones & Bartlett Learning, LLC. NOT FOR SALE OR DISTRIBUTION. General Procedure: One-Step Growth Curves FiGure 4-1 The diagram briefly outlines the steps involved © Jones & Bartlett Learning, LLC © Jones & inBartlett performing Learning,one-step growth LLCexperiments. Step 5 includes NOT FOR SALE OR DISTRIBUTIONStep 1: NOT FOR SALEa photograph OR of DISTRIBUTION viral plaques (clearings where the virus Infect monolayers of tissue destroyed the cell monolayer). The plaque assay is a culture cells (using a vertical quantitative assay used to determine the number of viruses laminar flow biosafety hood) present in a given sample. The results of these assays can be and allow the infection to used to generate a one-step growth curve for a particular virus. proceed in a CO2 incubator. For more details about virological methods see Chapter 5, Laboratory Diagnosis of Viral Diseases and Working with © Jones & Bartlett Learning, LLC Viruses in the Research Laboratory.© Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION Step 2: Monitor experiments via CO2 incubator. inverted microscope. Step 3:© Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC Collect infected cell lysates at variousNOT time pointsFOR after SALE infection. OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION Step 4: Perform serial dilutions on infected cell lysates and
Recommended publications
  • Identification of Two Major Virion Protein Genes of White Spot Syndrome Virus of Shrimp
    Virology 266, 227–236 (2000) doi:10.1006/viro.1999.0088, available online at http://www.idealibrary.com on View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Identification of Two Major Virion Protein Genes of White Spot Syndrome Virus of Shrimp Marie¨lle C. W. van Hulten, Marcel Westenberg, Stephen D. Goodall, and Just M. Vlak1 Laboratory of Virology, Wageningen Agricultural University, Binnenhaven 11, 6709 PD Wageningen, The Netherlands Received August 25, 1999; returned to author for revision October 28, 1999; accepted November 8, 1999 White Spot Syndrome Virus (WSSV) is an invertebrate virus, causing considerable mortality in shrimp. Two structural proteins of WSSV were identified. WSSV virions are enveloped nucleocapsids with a bacilliform morphology with an approximate size of 275 ϫ 120 nm, and a tail-like extension at one end. The double-stranded viral DNA has an approximate size 290 kb. WSSV virions, isolated from infected shrimps, contained four major proteins: 28 kDa (VP28), 26 kDa (VP26), 24 kDa (VP24), and 19 kDa (VP19) in size, respectively. VP26 and VP24 were found associated with nucleocapsids; the others were associated with the envelope. N-terminal amino acid sequences of nucleocapsid protein VP26 and the envelope protein VP28 were obtained by protein sequencing and used to identify the respective genes (vp26 and vp28) in the WSSV genome. To confirm that the open reading frames of WSSV vp26 (612) and vp28 (612) are coding for the putative major virion proteins, they were expressed in insect cells using baculovirus vectors and analyzed by Western analysis.
    [Show full text]
  • Multiple Origins of Viral Capsid Proteins from Cellular Ancestors
    Multiple origins of viral capsid proteins from PNAS PLUS cellular ancestors Mart Krupovica,1 and Eugene V. Kooninb,1 aInstitut Pasteur, Department of Microbiology, Unité Biologie Moléculaire du Gène chez les Extrêmophiles, 75015 Paris, France; and bNational Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894 Contributed by Eugene V. Koonin, February 3, 2017 (sent for review December 21, 2016; reviewed by C. Martin Lawrence and Kenneth Stedman) Viruses are the most abundant biological entities on earth and show genome replication. Understanding the origin of any virus group is remarkable diversity of genome sequences, replication and expres- possible only if the provenances of both components are elucidated sion strategies, and virion structures. Evolutionary genomics of (11). Given that viral replication proteins often have no closely viruses revealed many unexpected connections but the general related homologs in known cellular organisms (6, 12), it has been scenario(s) for the evolution of the virosphere remains a matter of suggested that many of these proteins evolved in the precellular intense debate among proponents of the cellular regression, escaped world (4, 6) or in primordial, now extinct, cellular lineages (5, 10, genes, and primordial virus world hypotheses. A comprehensive 13). The ability to transfer the genetic information encased within sequence and structure analysis of major virion proteins indicates capsids—the protective proteinaceous shells that comprise the that they evolved on about 20 independent occasions, and in some of cores of virus particles (virions)—is unique to bona fide viruses and these cases likely ancestors are identifiable among the proteins of distinguishes them from other types of selfish genetic elements cellular organisms.
    [Show full text]
  • A Preliminary Study of Viral Metagenomics of French Bat Species in Contact with Humans: Identification of New Mammalian Viruses
    A preliminary study of viral metagenomics of French bat species in contact with humans: identification of new mammalian viruses. Laurent Dacheux, Minerva Cervantes-Gonzalez, Ghislaine Guigon, Jean-Michel Thiberge, Mathias Vandenbogaert, Corinne Maufrais, Valérie Caro, Hervé Bourhy To cite this version: Laurent Dacheux, Minerva Cervantes-Gonzalez, Ghislaine Guigon, Jean-Michel Thiberge, Mathias Vandenbogaert, et al.. A preliminary study of viral metagenomics of French bat species in contact with humans: identification of new mammalian viruses.. PLoS ONE, Public Library of Science, 2014, 9 (1), pp.e87194. 10.1371/journal.pone.0087194.s006. pasteur-01430485 HAL Id: pasteur-01430485 https://hal-pasteur.archives-ouvertes.fr/pasteur-01430485 Submitted on 9 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License A Preliminary Study of Viral Metagenomics of French Bat Species in Contact with Humans: Identification of New Mammalian Viruses Laurent Dacheux1*, Minerva Cervantes-Gonzalez1,
    [Show full text]
  • Viral Diversity in Oral Cavity from Sapajus Nigritus by Metagenomic Analyses
    Brazilian Journal of Microbiology (2020) 51:1941–1951 https://doi.org/10.1007/s42770-020-00350-w ENVIRONMENTAL MICROBIOLOGY - RESEARCH PAPER Viral diversity in oral cavity from Sapajus nigritus by metagenomic analyses Raissa Nunes dos Santos1,2 & Fabricio Souza Campos2,3 & Fernando Finoketti1,2 & Anne Caroline dos Santos1,2 & Aline Alves Scarpellini Campos1,2,3 & Paulo Guilherme Carniel Wagner2,4 & Paulo Michel Roehe 1,2 & Helena Beatriz de Carvalho Ruthner Batista2,5 & Ana Claudia Franco1,2 Received: 20 January 2020 /Accepted: 25 July 2020 / Published online: 11 August 2020 # Sociedade Brasileira de Microbiologia 2020 Abstract Sapajus nigritus are non-human primates which are widespread in South America. They are omnivores and live in troops of up to 40 individuals. The oral cavity is one of the main entry routes for microorganisms, including viruses. Our study proposed the identification of viral sequences from oral swabs collected in a group of capuchin monkeys (n = 5) living in a public park in a fragment of Mata Atlantica in South Brazil. Samples were submitted to nucleic acid extraction and enrichment, which was followed by the construction of libraries. After high-throughput sequencing and contig assembly, we used a pipeline to identify 11 viral families, which are Herpesviridae, Parvoviridae, Papillomaviridae, Polyomaviridae, Caulimoviridae, Iridoviridae, Astroviridae, Poxviridae,andBaculoviridae, in addition to two complete viral genomes of Anelloviridae and Genomoviridae. Some of these viruses were closely related to known viruses, while other fragments are more distantly related, with 50% of identity or less to the currently available virus sequences in databases. In addition to host-related viruses, insect and small vertebrate-related viruses were also found, as well as plant-related viruses, bringing insights about their diet.
    [Show full text]
  • Virus Interactions in the Aquatic World Stéphan Jacquet, Xu Zhong, Peter Peduzzi, T
    Virus interactions in the aquatic world Stéphan Jacquet, Xu Zhong, Peter Peduzzi, T. Frede Thingstad, Kaarle J.Parikka, Markus G.Weinbauer To cite this version: Stéphan Jacquet, Xu Zhong, Peter Peduzzi, T. Frede Thingstad, Kaarle J.Parikka, et al.. Virus interactions in the aquatic world. Viruses of Microorganisms, Caister Academic Press, 2018, 978-1- 910190-86-9. 10.21775/9781910190852.06. hal-02786120 HAL Id: hal-02786120 https://hal.inrae.fr/hal-02786120 Submitted on 4 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Virus Interactions in the Aquatic World Stéphan Jacquet1, Xu Zhong2, Peter Peduzzi3, T. Frede Thingstad4, Kaarle J.Parikka5 and Markus G.Weinbauer6,7* 6 1INRA, UMR CARRTEL, Thonon les Bains, France. 2Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, Vancouver, BC, Canada. 3Department of Limnology and Bio-Oceanography, University of Vienna, Vienna, Austria. 4Department of Biology and Hjort Centre for Marine Ecosystem Dynamics, University of Bergen, Bergen, Norway. 5LabMCT, Belgian Department of Defence, Queen Astrid Military Hospital, Brussels, Belgium. 6Ocean Observatory of Villefranche-sur-Mer, Sorbonne University, Villefranche-sur-Mer, France. 7CNRS-INSU, Villefranche Oceanographic Laboratory, Villefranche-sur-Mer, France.
    [Show full text]
  • Biochemical and Structural Characterisation of Membrane-Containing Icosahedral Dsdna Bacteriophages Infecting Thermophilic Thermus Thermophilus
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Virology 379 (2008) 10–19 Contents lists available at ScienceDirect Virology journal homepage: www.elsevier.com/locate/yviro Biochemical and structural characterisation of membrane-containing icosahedral dsDNA bacteriophages infecting thermophilic Thermus thermophilus S.T. Jaatinen, L.J. Happonen, P. Laurinmäki, S.J. Butcher, D.H. Bamford ⁎ Department of Biological and Environmental Sciences and Institute of Biotechnology, Biocenter 2, FIN-00014, University of Helsinki, Finland ARTICLE INFO ABSTRACT Article history: Icosahedral dsDNA viruses isolated from hot springs and proposed to belong to the Tectiviridae family infect Received 1 February 2008 the Gram-negative thermophilic Thermus thermophilus bacterium. Seven such viruses were obtained from Returned to author for revision11 March 2008 the Promega Corporation collection. The structural protein patterns of three of these viruses, growing to a Accepted 8 June 2008 high titer, appeared very similar but not identical. The most stable virus, P23-77, was chosen for more Available online 25 July 2008 detailed studies. Analysis of highly purified P23-77 by thin layer chromatography for neutral lipids showed Keywords: lipid association with the virion. Cryo-EM based three-dimensional image reconstruction of P23-77 to 1.4 nm P23-77 resolution revealed an icosahedrally-ordered protein coat, with spikes on the vertices, and an internal P23-72 membrane. The capsid architecture of P23-77 is most similar to that of the archaeal virus SH1. These findings P23-65H further complicate the grouping of icosahedrally-symmetric viruses containing an inner membrane.
    [Show full text]
  • Entry of Hepatitis B and C Viruses
    VIRAL HEPATITIS FORUM Getting Close Viralto Eradication Hepatitis Forum I. Basic Getting Research Close to Eradication I. Basic Research Entry of Hepatitis B and C Viruses Seungtaek Kim Severance Biomedical Science Institute, Institute of Gastroenterology, Department of Internal Medicine, Yonsei University Col- lege of Medicine, Seoul, Korea B형과 C형 간염 바이러스에 대한 최근의 분자, 세포생물학적인 발전은 간세포를 특이적으로 감염시키는 이들 바이러스에 대한 세포 수용체의 발굴과 더불어 그들의 작용 기전에 대해 더 자세한 정보들을 제공해주고 있다. 특히 C형 간염 바이러스의 경우, 간세포의 서로 다른 곳에 위치한 세포 수용체들이 바이러스의 세포 진입시에 바이러스 표면의 당단백질과 어떤 방식으로 서로 상호 작용하며 세포 내 신호 전달 과정을 거쳐 세포 안으로 들어오게 되는지 그 기전들이 서서히 드러나고 있다. 한편, B형 간염 바이러스의 경우, 오랫동안 밝혀내지 못했던 이 바이러스의 세포 수용체인 NTCP를 최근 발굴하게 됨으로써 세포 진입에 관한 연구에 획기적인 계기를 마련하게 되었으며 동시에 이를 저해할 수 있는 새로운 항바이러스제의 개발도 활기를 띠게 되었다. 임상적으로 매우 중요한 이 두 바이러스의 세포 진입에 관한 연구는 앞으로도 매우 활발하게 이루어질 것으로 기대된다. Keywords: B형 간염 바이러스, C형 간염 바이러스, 세포 진입, 신호 전달, NTCP There are five hepatitis viruses although their classes, genomes, and modes of transmission are different from each other. Of these, hepatitis B virus (HBV) and hepatitis C virus (HCV) are the most dangerous, life-threatening pathogens, which are also responsible for 80-90% of hepatocellular carcinoma. HBV belongs to hepadnaviridae (family) and it has double-strand DNA as its genome, however, its replication occurs via reverse transcription like retrovirus replication. In contrast, HCV belongs to flaviviridae (family) and has positive-sense, single-strand RNA as its genome.
    [Show full text]
  • The DNA Virus Invertebrate Iridescent Virus 6 Is a Target of the Drosophila Rnai Machinery
    The DNA virus Invertebrate iridescent virus 6 is a target of the Drosophila RNAi machinery Alfred W. Bronkhorsta,1, Koen W. R. van Cleefa,1, Nicolas Vodovarb,2, Ikbal_ Agah Ince_ c,d,e, Hervé Blancb, Just M. Vlakc, Maria-Carla Salehb,3, and Ronald P. van Rija,3 aDepartment of Medical Microbiology, Nijmegen Centre for Molecular Life Sciences, Nijmegen Institute for Infection, Inflammation, and Immunity, Radboud University Nijmegen Medical Centre, 6500 HB Nijmegen, The Netherlands; bViruses and RNA Interference Group, Institut Pasteur, Centre National de la Recherche Scientifique, Unité de Recherche Associée 3015, 75015 Paris, France; cLaboratory of Virology, Wageningen University, 6708 PB Wageningen, The Netherlands; dDepartment of Genetics and Bioengineering, Yeditepe University, Istanbul 34755, Turkey; and eDepartment of Biosystems Engineering, Faculty of Engineering, Giresun University, Giresun 28100, Turkey Edited by Peter Palese, Mount Sinai School of Medicine, New York, NY, and approved October 19, 2012 (received for review April 28, 2012) RNA viruses in insects are targets of an RNA interference (RNAi)- sequently, are hypersensitive to virus infection and succumb more based antiviral immune response, in which viral replication inter- rapidly than their wild-type (WT) controls (11–14). mediates or viral dsRNA genomes are processed by Dicer-2 (Dcr-2) Small RNA cloning and next-generation sequencing provide into viral small interfering RNAs (vsiRNAs). Whether dsDNA virus detailed insights into vsiRNA biogenesis. In several studies in infections are controlled by the RNAi pathway remains to be insects, the polarity of the vsiRNA population deviates strongly determined. Here, we analyzed the role of RNAi in DNA virus from the highly skewed distribution of positive strand (+) over infection using Drosophila melanogaster infected with Invertebrate negative (−) viral RNAs that is generally observed in (+) RNA iridescent virus 6 (IIV-6) as a model.
    [Show full text]
  • And Giant Guitarfish (Rhynchobatus Djiddensis)
    VIRAL DISCOVERY IN BLUEGILL SUNFISH (LEPOMIS MACROCHIRUS) AND GIANT GUITARFISH (RHYNCHOBATUS DJIDDENSIS) BY HISTOPATHOLOGY EVALUATION, METAGENOMIC ANALYSIS AND NEXT GENERATION SEQUENCING by JENNIFER ANNE DILL (Under the Direction of Alvin Camus) ABSTRACT The rapid growth of aquaculture production and international trade in live fish has led to the emergence of many new diseases. The introduction of novel disease agents can result in significant economic losses, as well as threats to vulnerable wild fish populations. Losses are often exacerbated by a lack of agent identification, delay in the development of diagnostic tools and poor knowledge of host range and susceptibility. Examples in bluegill sunfish (Lepomis macrochirus) and the giant guitarfish (Rhynchobatus djiddensis) will be discussed here. Bluegill are popular freshwater game fish, native to eastern North America, living in shallow lakes, ponds, and slow moving waterways. Bluegill experiencing epizootics of proliferative lip and skin lesions, characterized by epidermal hyperplasia, papillomas, and rarely squamous cell carcinoma, were investigated in two isolated poopulations. Next generation genomic sequencing revealed partial DNA sequences of an endogenous retrovirus and the entire circular genome of a novel hepadnavirus. Giant Guitarfish, a rajiform elasmobranch listed as ‘vulnerable’ on the IUCN Red List, are found in the tropical Western Indian Ocean. Proliferative skin lesions were observed on the ventrum and caudal fin of a juvenile male quarantined at a public aquarium following international shipment. Histologically, lesions consisted of papillomatous epidermal hyperplasia with myriad large, amphophilic, intranuclear inclusions. Deep sequencing and metagenomic analysis produced the complete genomes of two novel DNA viruses, a typical polyomavirus and a second unclassified virus with a 20 kb genome tentatively named Colossomavirus.
    [Show full text]
  • Virus–Host Interactions and Their Roles in Coral Reef Health and Disease
    !"#$"%& Virus–host interactions and their roles in coral reef health and disease Rebecca Vega Thurber1, Jérôme P. Payet1,2, Andrew R. Thurber1,2 and Adrienne M. S. Correa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cycling. Last, we outline how marine viruses are an integral part of the reef system and suggest $4&$($4-(01.,/-1'-(+.(80%/#-#(+1(%--.(./1'$0+1(0#(&1(-##-1$0&,('+>3+1-1$(+.($4-#-(:,+"&,,9( 0>3+%$&1$(-180%+1>-1$#; To p - d ow n e f f e c t s Viruses infect all cellular life, including bacteria and evidence that macroorganisms play important parts in The ecological concept that eukaryotes, and contain ~200 megatonnes of carbon the dynamics of viroplankton; for example, sponges can organismal growth and globally1 — thus, they are integral parts of marine eco- filter and consume viruses6,7.
    [Show full text]
  • Opportunistic Intruders: How Viruses Orchestrate ER Functions to Infect Cells
    REVIEWS Opportunistic intruders: how viruses orchestrate ER functions to infect cells Madhu Sudhan Ravindran*, Parikshit Bagchi*, Corey Nathaniel Cunningham and Billy Tsai Abstract | Viruses subvert the functions of their host cells to replicate and form new viral progeny. The endoplasmic reticulum (ER) has been identified as a central organelle that governs the intracellular interplay between viruses and hosts. In this Review, we analyse how viruses from vastly different families converge on this unique intracellular organelle during infection, co‑opting some of the endogenous functions of the ER to promote distinct steps of the viral life cycle from entry and replication to assembly and egress. The ER can act as the common denominator during infection for diverse virus families, thereby providing a shared principle that underlies the apparent complexity of relationships between viruses and host cells. As a plethora of information illuminating the molecular and cellular basis of virus–ER interactions has become available, these insights may lead to the development of crucial therapeutic agents. Morphogenesis Viruses have evolved sophisticated strategies to establish The ER is a membranous system consisting of the The process by which a virus infection. Some viruses bind to cellular receptors and outer nuclear envelope that is contiguous with an intri‑ particle changes its shape and initiate entry, whereas others hijack cellular factors that cate network of tubules and sheets1, which are shaped by structure. disassemble the virus particle to facilitate entry. After resident factors in the ER2–4. The morphology of the ER SEC61 translocation delivering the viral genetic material into the host cell and is highly dynamic and experiences constant structural channel the translation of the viral genes, the resulting proteins rearrangements, enabling the ER to carry out a myriad An endoplasmic reticulum either become part of a new virus particle (or particles) of functions5.
    [Show full text]
  • Non-Norovirus Viral Gastroenteritis Outbreaks Reported to the National Outbreak Reporting System, USA, 2009–2018 Claire P
    Non-Norovirus Viral Gastroenteritis Outbreaks Reported to the National Outbreak Reporting System, USA, 2009–2018 Claire P. Mattison, Molly Dunn, Mary E. Wikswo, Anita Kambhampati, Laura Calderwood, Neha Balachandran, Eleanor Burnett, Aron J. Hall During 2009–2018, four adenovirus, 10 astrovirus, 123 The Study rotavirus, and 107 sapovirus gastroenteritis outbreaks NORS is a dynamic, voluntary outbreak reporting were reported to the US National Outbreak Reporting system. For each reported outbreak, health depart- System (annual median 30 outbreaks). Most were at- ments report the mode of transmission, number of tributable to person-to-person transmission in long-term confirmed and suspected cases, and aggregate epi- care facilities, daycares, and schools. Investigations of demiologic and demographic information as avail- norovirus-negative gastroenteritis outbreaks should in- able. NORS defines outbreaks as >2 cases of similar clude testing for these viruses. illness associated with a common exposure or epi- demiologic link (9). Health departments determine n the United States, ≈179 million cases of acute gas- reported outbreak etiologies on the basis of available troenteritis (AGE) occur annually (1). Norovirus is I laboratory, epidemiologic, and clinical data; specific the leading cause of AGE in the United States; other laboratory testing protocols vary by health depart- viral causes include adenovirus (specifically group F ment. Outbreak etiologies are considered confirmed or types 40 and 41), astrovirus, sapovirus, and rotavi- when >2 laboratory-confirmed cases are reported rus (2,3). These viruses are spread primarily through and considered suspected when <2 laboratory-con- the fecal–oral route through person-to-person contact firmed cases are reported. Outbreaks are considered or through contaminated food, water, or fomites (4–8).
    [Show full text]