Hypoglycosylation Due to Dolichol Metabolism Defects
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METACYC ID Description A0AR23 GO:0004842 (Ubiquitin-Protein Ligase
Electronic Supplementary Material (ESI) for Integrative Biology This journal is © The Royal Society of Chemistry 2012 Heat Stress Responsive Zostera marina Genes, Southern Population (α=0. -
Dolichol Monophosphate Glucose: an Intermediate in Glucose Transfer in Liver* Nicolfis H
Proceedings of the National Academy of Sciences Vol. 66, No. 1, pp. 153-159, May 1970 Dolichol Monophosphate Glucose: An Intermediate in Glucose Transfer in Liver* Nicolfis H. Behrenst and Luis F. Leloir4 INSTITUTO DE INVESTIGACIONES BIOQUfMICAS "FUNDACI6N CAMPOMAR" AND FACULTAD DE CIENCIAS EXACTAS Y NATURALES, BUENOS AIRES, ARGENTINA Communicated February 9, 1970 Abstract. The microsomal fraction of liver has been found to catalyze glucose transfer from UDPG to a lipid acceptor which appears to be identical to the compound obtained by chemical phosphorylation of dolichol. The substance formed (dolichol monophosphate glucose) is acid labile and yields 1,6-anhydro- glucosan by alkaline treatment. It can be used as substrate by the enzyme system yielding a glucoprotein which is subsequently hydrolyzed to glucose. One of the most important developments in the field of saccharide biosynthesis has been the discovery of lipid intermediates in sugar transfer reactions. The studies of Wright et al.1 on 0-antigen and of Higashi et al.2 on peptidoglucan syn- thesis in bacteria showed that polyprenol pyrophosphate sugars are formed by transfer from nucleotide sugars and subsequently act as donors for polysaccharide formation. As shown by Scher et al.,3 similar events occur in M. lysodeikticus where mannose is first transferred from GDP-mannose to undecaprenol mono- phosphate and then to mannan. In animal tissues an enzyme has been described which catalyzes mannose transfer from GDP-mannose to a lipid.4 In the course of work with UDPG it has now been found that liver contains enzymes which catalyze the following reactions: UDPG + acceptor lipid G-acceptor lipid + UDP (1) G-acceptor lipid + protein acceptor lipid + G-protein (2) G-protein -- G + protein (3) Since the rate of formation of glucosylated acceptor lipid by reaction (1) is proportional to the acceptor lipid added, the latter could be estimated and puri- fied. -
Molecular Mechanisms Involved Involved in the Interaction Effects of HCV and Ethanol on Liver Cirrhosis
Virginia Commonwealth University VCU Scholars Compass Theses and Dissertations Graduate School 2010 Molecular Mechanisms Involved Involved in the Interaction Effects of HCV and Ethanol on Liver Cirrhosis Ryan Fassnacht Virginia Commonwealth University Follow this and additional works at: https://scholarscompass.vcu.edu/etd Part of the Physiology Commons © The Author Downloaded from https://scholarscompass.vcu.edu/etd/2246 This Thesis is brought to you for free and open access by the Graduate School at VCU Scholars Compass. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of VCU Scholars Compass. For more information, please contact [email protected]. Ryan C. Fassnacht 2010 All Rights Reserved Molecular Mechanisms Involved in the Interaction Effects of HCV and Ethanol on Liver Cirrhosis A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science at Virginia Commonwealth University. by Ryan Christopher Fassnacht, B.S. Hampden Sydney University, 2005 M.S. Virginia Commonwealth University, 2010 Director: Valeria Mas, Ph.D., Associate Professor of Surgery and Pathology Division of Transplant Department of Surgery Virginia Commonwealth University Richmond, Virginia July 9, 2010 Acknowledgement The Author wishes to thank his family and close friends for their support. He would also like to thank the members of the molecular transplant team for their help and advice. This project would not have been possible with out the help of Dr. Valeria Mas and her endearing -
Yeast Genome Gazetteer P35-65
gazetteer Metabolism 35 tRNA modification mitochondrial transport amino-acid metabolism other tRNA-transcription activities vesicular transport (Golgi network, etc.) nitrogen and sulphur metabolism mRNA synthesis peroxisomal transport nucleotide metabolism mRNA processing (splicing) vacuolar transport phosphate metabolism mRNA processing (5’-end, 3’-end processing extracellular transport carbohydrate metabolism and mRNA degradation) cellular import lipid, fatty-acid and sterol metabolism other mRNA-transcription activities other intracellular-transport activities biosynthesis of vitamins, cofactors and RNA transport prosthetic groups other transcription activities Cellular organization and biogenesis 54 ionic homeostasis organization and biogenesis of cell wall and Protein synthesis 48 plasma membrane Energy 40 ribosomal proteins organization and biogenesis of glycolysis translation (initiation,elongation and cytoskeleton gluconeogenesis termination) organization and biogenesis of endoplasmic pentose-phosphate pathway translational control reticulum and Golgi tricarboxylic-acid pathway tRNA synthetases organization and biogenesis of chromosome respiration other protein-synthesis activities structure fermentation mitochondrial organization and biogenesis metabolism of energy reserves (glycogen Protein destination 49 peroxisomal organization and biogenesis and trehalose) protein folding and stabilization endosomal organization and biogenesis other energy-generation activities protein targeting, sorting and translocation vacuolar and lysosomal -
Of Mevalonate Metabolism'
ICANCER RESEARCH57. 3498—3505.AugustIS. 9971 Regulation of Proliferation and Ras Localization in Transformed Cells by Products of Mevalonate Metabolism' Jennifer A. Cuthbert2 and Peter E. Lipsky Department of Internal Medicine. The Unit'ersitv of Texas Southwestern Medical (‘enterat Dallas. Dallas. Texas 75235-9151 ABSTRACT position 186, the removal of the three COOH-terminal amino acids at positions 187—189, and carboxymethylation of the new COOH-termi Lovastatin, an inhibitor of 3-hydroxy.3-methylglutaryl (HMG) CoA nab cysteine. In addition, either palmitybation of other cysteine resi reductase, and 6-fluoromevalonate (Fmev), an inhibitor of diphospho dues in the COOH terminus (H-Ras, N-Ras, and K-RasA) or a mevalonate decarboxylase, blocked the synthesis of downstream meval. onate products, including prenyl-derived lipids, and prevented membrane pobybasic domain (K-RasB) is important in enhancing membrane localization of Ras in the myeloid cell line U.937. In contrast to lovastatin, association (7). These processes occur stepwise, and the first step, that which induced cytosol localization of Ras in U-937 cells, Fmev failed to of farnesybation of the full-length polypeptide, is thereby essential for increase cytosolic Ras and also completely prevented the proliferation of plasma membrane localization (12—14).Thus, compounds and muta U.937 cells. Growth of U-937 cells was restored by the addition of lovas tions that block the process of farnesylation interfere with the trans tatin to Fmev-blocked cells. These results implied that a product of formation and proliferation that are dependent upon mutationally mevalonate metabolism proximal to isopentenyl diphosphate was respon. activated Ras. -
Hypoglycosylation Due to Dolichol Metabolism Defects Jonas Denecke, Christian Kranz
Hypoglycosylation due to dolichol metabolism defects Jonas Denecke, Christian Kranz To cite this version: Jonas Denecke, Christian Kranz. Hypoglycosylation due to dolichol metabolism defects. Biochimica et Biophysica Acta - Molecular Basis of Disease, Elsevier, 2009, 1792 (9), pp.888. 10.1016/j.bbadis.2009.01.013. hal-00517931 HAL Id: hal-00517931 https://hal.archives-ouvertes.fr/hal-00517931 Submitted on 16 Sep 2010 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. ÔØ ÅÒÙ×Ö ÔØ Hypoglycosylation due to dolichol metabolism defects Jonas Denecke, Christian Kranz PII: S0925-4439(09)00028-3 DOI: doi:10.1016/j.bbadis.2009.01.013 Reference: BBADIS 62923 To appear in: BBA - Molecular Basis of Disease Received date: 31 August 2008 Revised date: 21 January 2009 Accepted date: 26 January 2009 Please cite this article as: Jonas Denecke, Christian Kranz, Hypoglycosyla- tion due to dolichol metabolism defects, BBA - Molecular Basis of Disease (2009), doi:10.1016/j.bbadis.2009.01.013 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Glycoprotein Synthesis in Maize Endosperm Cells the NUCLEOSIDE DIPHOSPHATE-SUGAR: DOLICHOL-PHOSPHATE GLYCOSYLTRANSFERASES
Plant Physiol. (1988) 87, 420-426 0032-0889/88/87/0420/07/$01 .00/0 Glycoprotein Synthesis in Maize Endosperm Cells THE NUCLEOSIDE DIPHOSPHATE-SUGAR: DOLICHOL-PHOSPHATE GLYCOSYLTRANSFERASES Received for publication September 14, 1987 and in revised form January 4, 1988 WALTER E. RIEDELL' AND JAN A. MIERNYK* Seed Biosynthesis Research Unit, United States Department of Agriculture, Agricultural Research Service, Northern Regional Research Center, Peoria, Illinois 61604 ABSTRACT dolichol (24). Studies with mammalian cells and yeast (16, 32) have shown Microsomal membrane preparations from maize (Zea mays L., inbred that the enzymes of the dolichol cycle are associated with the A636) endosperm cultures contained enzymes that transferred sugar moie- ER. The assembly of Man,GlcNAc2-PP-dolichol is thought to ties from uridine diphosphate-N-acetylglucosamine, guanosine diphos- take place on the cytoplasmic surface of the ER. Subsequently, phate-mannose, and uridine diphosphate-glucose to dolichol-phosphate. this oligosaccharide is translocated to the lumen of the ER where These enzyme activities were characterized with respect to detergent and additional Man- and Glc-residues are transferred from lipid-car- pH optima, substrate kinetic constants, and product and antibiotic in- riers, forming the final tetradeccasaccharide-PP-lipid (21, 33). hibition constants. It was demonstrated by mild acid hydrolysis and high The oligosaccharide is then transferred en bloc from the lipid performance liquid chromatography that the products of the N-acetyl- carrier to the nascent polypeptide in a cotranslational event (21). glucosamine transferases were N-acetylglucosamine-pyrophosphoryl-dol- The first steps of oligosaccharide processing (e.g. removal of ichol and N,N'-diacetyl-chitobiosyl-pyrophosphoryl-dolichol and that the terminal glucose residues and, in mammalian cells, at least one product of the mannose transferase was mannosyl-phosphoryl-dolichol. -
Associated with Low Dehydrodolichol Diphosphate Synthase (DHDDS) Activity S
Sabry et al. Orphanet Journal of Rare Diseases (2016) 11:84 DOI 10.1186/s13023-016-0468-1 RESEARCH Open Access A case of fatal Type I congenital disorders of glycosylation (CDG I) associated with low dehydrodolichol diphosphate synthase (DHDDS) activity S. Sabry1,2,3,4, S. Vuillaumier-Barrot1,2,5, E. Mintet1,2, M. Fasseu1,2, V. Valayannopoulos6, D. Héron7,8, N. Dorison8, C. Mignot7,8,9, N. Seta5,10, I. Chantret1,2, T. Dupré1,2,5 and S. E. H. Moore1,2* Abstract Background: Type I congenital disorders of glycosylation (CDG-I) are mostly complex multisystemic diseases associated with hypoglycosylated serum glycoproteins. A subgroup harbour mutations in genes necessary for the biosynthesis of the dolichol-linked oligosaccharide (DLO) precursor that is essential for protein N-glycosylation. Here, our objective was to identify the molecular origins of disease in such a CDG-Ix patient presenting with axial hypotonia, peripheral hypertonia, enlarged liver, micropenis, cryptorchidism and sensorineural deafness associated with hypo glycosylated serum glycoproteins. Results: Targeted sequencing of DNA revealed a splice site mutation in intron 5 and a non-sense mutation in exon 4 of the dehydrodolichol diphosphate synthase gene (DHDDS). Skin biopsy fibroblasts derived from the patient revealed ~20 % residual DHDDS mRNA, ~35 % residual DHDDS activity, reduced dolichol-phosphate, truncated DLO and N-glycans, and an increased ratio of [2-3H]mannose labeled glycoprotein to [2-3H]mannose labeled DLO. Predicted truncated DHDDS transcripts did not complement rer2-deficient yeast. SiRNA-mediated down-regulation of DHDDS in human hepatocellular carcinoma HepG2 cells largely mirrored the biochemical phenotype of cells from the patient. -
TIBS-Revised Eichler and Imperiali-2017-Withfigs
Stereochemical Divergence of Polyprenol Phosphate Glycosyltransferases The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Eichler, Jerry, and Barbara Imperiali. “Stereochemical Divergence of Polyprenol Phosphate Glycosyltransferases.” Trends in Biochemical Sciences 43, no. 1 (January 2018): 10–17. As Published https://doi.org/10.1016/j.tibs.2017.10.008 Publisher Elsevier Version Author's final manuscript Citable link http://hdl.handle.net/1721.1/119846 Terms of Use Creative Commons Attribution-NonCommercial-NoDerivs License Detailed Terms http://creativecommons.org/licenses/by-nc-nd/4.0/ Stereochemical divergence of polyprenol phosphate glycosyltransferases Jerry Eichler1 and Barbara Imperiali2 1Dept. of Life Sciences, Ben Gurion University of the Negev, Beersheva, Israel 2Dept. of Biology and Dept. of Chemistry, Massachusetts Institute of Technology, Cambridge MA, USA *correspondence to: [email protected] (Jerry Eichler) or [email protected] (Barbara Imperiali) Keywords: Dolichol phosphate, dolichol phosphate glucose synthase, dolichol phosphate mannose synthase, polyprenol phosphate, protein glycosylation, stereochemistry 1 Abstract In the three domains of life, lipid-linked glycans contribute to various cellular processes, ranging from protein glycosylation to glycosylphosphatidylinositol anchor biosynthesis to peptidoglycan assembly. In generating many of these glycoconjugates, phosphorylated polyprenol-based lipids are charged with single sugars by polyprenol -
Mevalonic Acid Products As Mediators of Cell Proliferation in Simian Virus 40-Transformed 3T3 Cells1
[CANCER RESEARCH 47. 4825-4829, September IS, 1987] Mevalonic Acid Products as Mediators of Cell Proliferation in Simian Virus 40-transformed 3T3 Cells1 Olle Larsson2 and Brht-Marie Johansson Department of Tumor Pathology, Karolinska Institute!, Karolinska Hospital, S-104 01 Stockholm, Sweden ABSTRACT GI, designated dpm (13). dprn was found to be of relative constant length (3 to 4 h) followed by the pre-DNA-synthetic Effects of treatment with serum-free medium and 25-hydroxycholes- terol (2S-OH) on the cell cycle of simian virus 40-transformed 3T3 part of GI, designated Gips, with a variable length (13). The fibroblasts, designated SV-3T3 cells, were studied and compared with progression through G,pm was also found to be very sensitive simultaneous effects on the activity of 3-hydroxy-3-methylglutaryl to inhibition of de novo protein synthesis, indicating that labile (HMG) CoA reducÃase and incorporation of |3H|mevalonic acid into proteins or enzymes are involved in the growth commitment cholesterol, Coenzyme Q, and dolichol. The data confirm our previous process (13). In our search for candidates for cell cycle media finding (O. Larsson and A. Zetterberg, Cancer Res., 46: 1233-1239, tors we have focused our interest on the enzyme HMG CoA 1986) that 25-OH inhibits the cell cycle traverse of SV-3T3 cells specif reducÃase,3which is the rate-limiting enzyme in the synthesis ically in early (.,. In contrast, treatment with serum-free medium had no of cholesterol and isoprenoid derivatives (15). In a recent study effect on cell cycle progression. The effect of 25-OH on the cell cycle we compared the effects of serum starvation with the effects of traverse was correlated to a substantial decrease in the activity of HMG treatment by an inhibitor of HMG CoA reductase, 25-OH, on CoA reductase, whereas there was no change in the rate of |3H|mevalonic the G, transition in 3T3,3T6, and SV 3T3 cells (14). -
Involved in Dolichol Recognition (Isoprenoid/Endoplasmic Reticulum/N-Glycosylation) CHARLES F
Proc. Nati. Acad. Sci. USA Vol. 86, pp. 7366-7369, October 1989 Biochemistry A 13-amino acid peptide in three yeast glycosyltransferases may be involved in dolichol recognition (isoprenoid/endoplasmic reticulum/N-glycosylation) CHARLES F. ALBRIGHT*, PETER ORLEAN, AND PHILLIPS W. ROBBINS Biology Department and Center for Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139 Contributed by Phillips W. Robbins, June 30, 1989 ABSTRACT A 13-amino acid peptide was identified in unpublished data). In addition to these proteins, the pheno- three glycosyltransferases of the yeast endoplasmic reticulum. type of the yeast sec59 mutant suggests a role for the SEC59 These enzymes, the products of the ALGi, ALG7, and DPMI protein in biosynthesis of the lipid-linked oligosaccharide genes, catalyze the transfer of sugars from nucleotide sugars to precursor, although its specific function is unclear (10). dolichol phosphate derivatives. The consensus sequence for the The availability of these sequences led us to look for conserved peptide was Leu-Phe-Val-Xaa-Phe-Xaa-Xaa- common structural features. We report here the identification Ile-Pro-Phe-Xaa-Phe-Tyr. A sequence resembling the con- of a small region of protein sequence shared by the ALG7, served peptide was also found in the predicted SEC59 protein, ALG1, DPM1, and SEC59 proteins. The location of this which is suspected to participate in assembly ofthe lipid-linked homologous sequence in a membrane-spanning domain, the precursor oligosaccharide, although its specific function is possible structure of this sequence, and the need for these unknown. All of the identified sequences contain an isoleucine enzymes to recognize dolichol derivatives suggest this con- at position 8 and phenylalanine or tyrosine at positions 2, 5, and served region may be involved in dolichol recognition.