PDF Output of CLIC (clustering by inferred co-expression)

Dataset: Num of in input set: 93 Total number of genes: 16493

CLIC PDF output has three sections:

1) Overview of Co-Expression Modules (CEMs) Heatmap shows pairwise correlations between all genes in the input query gene set.

Red lines shows the partition of input genes into CEMs, ordered by CEM strength.

Each row shows one gene, and the brightness of squares indicates its correlations with other genes.

Gene symbols are shown at left side and on the top of the heatmap.

2) Details of each CEM and its expansion CEM+ Top panel shows the posterior selection probability (dataset weights) for top GEO series datasets.

Bottom panel shows the CEM genes (blue rows) as well as expanded CEM+ genes (green rows).

Each column is one GEO series dataset, sorted by their posterior probability of being selected.

The brightness of squares indicates the gene's correlations with CEM genes in the corresponding dataset.

CEM+ includes genes that co-express with CEM genes in high-weight datasets, measured by LLR score.

3) Details of each GEO series dataset and its expression profile: Top panel shows the detailed information (e.g. title, summary) for the GEO series dataset.

Bottom panel shows the background distribution and the expression profile for CEM genes in this dataset. Num ofGenesinQueryGeneset:93.CEMs:0. Overview ofCo-ExpressionModules(CEMs)withDatasetWeighting D230025D16Rik 5430435G22Rik 5330417C22Rik D10Bwg1379e AI314180 Fam109b Fam109a Scamp1 Plekha8 Slc11a2 Nmnat2 Rab11a Snap25 Pcsk1n March4 March9 Arfgef2 Arfgef1 Golph3 Golga4 Golga1 Rbfox1 Atp2c1 Smpd4 Vamp5 Clasp2 Vamp4 Inpp5k Iqsec3 Iqsec2 Iqsec1 Ap4b1 Chac1 Rab6a Becn1 Dpy30 Rab10 Rab31 Arfrp1 Bace1 Fbxo8 Pcsk1 Mlana Atp9b Atp7b Prkd1 Cyth1 Atxn2 Atp7a Atp9a Chst2 Cyth3 Cyth4 Chst4 Cyth2 Bicd1 Tgfb2 Clvs2 Clvs1 Syt17 Stx4a Wipi1 Crhr1 Mon2 Gga3 Lrrk2 Gga2 Gsap Birc6 Cdh1 Aqp2 Furin Gcc2 Nbea Cby1 Clip3 Sod3 Psd4 Psd2 Snx9 Psd3 Scoc Optn Gbf1 Car4 Cnst Cln3 Flna Arl1 Cltb Cpd Pifo Psd

Arfgef1 Gbf1 Rab31 Inpp5k Scoc Ap4b1 Snap25 Pcsk1n Cln3 Slc11a2 Sod3 Cpd Fbxo8 Furin Psd3 Cyth3 Crhr1 Aqp2 Birc6 Pcsk1 Atp7b Bace1 Golph3 Rab10 Prkd1 Chst2 Vamp4 Syt17 Snx9 Dpy30 5430435G22Rik Arfrp1 Atp9a D230025D16Rik Flna 5330417C22Rik Iqsec1 March9 Gsap Bicd1 Gga2 Psd2 Mon2 Gcc2 Smpd4 Optn Clasp2 Becn1 Clip3 Mlana Atp2c1 Lrrk2 Clvs1 Golga1 Rab11a D10Bwg1379e Psd Plekha8 Nmnat2 AI314180 Arfgef2 Iqsec2 Cnst Atp7a Clvs2 Iqsec3 Gga3 Fam109b Rbfox1 Tgfb2 Wipi1 Atp9b March4 Atxn2 Arl1 Cyth1 Cdh1 Rab6a Golga4 Car4 Vamp5 Cyth2 Cby1 Chac1 Stx4a Nbea Scamp1 Cltb Pifo Chst4 Fam109a Psd4 Cyth4 0.0 Singletons Scale ofaveragePearsoncorrelations 0.2 0.4 0.6 0.8 1.0