THE MAGIC of HEALTHY SOIL Dr. Donovan C
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(12) United States Patent (10) Patent No.: US 8,513,329 B2 Lake Et Al
USOO8513329B2 (12) United States Patent (10) Patent No.: US 8,513,329 B2 Lake et al. (45) Date of Patent: Aug. 20, 2013 (54) CHEMICAL ADDITIVES TO MAKE 6,296,889 B1 10/2001 Ott et al. POLYMERIC MATERALS 6,635,692 B1 10/2003 Christie et al. 7,037,983 B2 5/2006 Huang et al. BODEGRADABLE 7,053,130 B2 5/2006 Nagarajan 7,067,596 B2 6/2006 Bastioli et al. (75) Inventors: John Allen Lake, Cedar Crest, NM 7,265,160 B2 * 9/2007 Oka et al. ..................... 521 50.5 (US); Samuel David Adams, 7,368,503 B2 5/2008 Hale Albuquerque, NM (US) 7,369,503 B2 * 5/2008 Takahashi et al. ............ 370,236 s 7,560,266 B2 7/2009 Bramucci et al. 7,812,066 B2 10/2010 Takenaka et al. (73) Assignee: Bio-Tec Environmental, LLC, 7.816,424 B2 10/2010 Takahashi et al. Albuquerque, NM (US) 8.222,316 B2 7/2012 Lake et al. 2003. O157214 A1 8/2003 Bonsignore et al. (*) Notice: Subject to any disclaimer, the term of this 2004.0068059 Al 42004 Katayama et al. patent is extended or adjusted under 35 3.SSA A. 2. MEC. et ca.ea U.S.C. 154(b) by 158 days. 2005. O1541 14 A1 7, 2005 Hale 2005/O181157 A1 8, 2005 Otome (21) Appl. No.: 12/113,844 2005/0181158 A1 8/2005 Otome et al. 2005/0208095 A1 9, 2005 Hunter et al. (22) Filed: May 1, 2008 2007, OO 10632 A1 1/2007 Kaplanet al. -
Forms of Intelligence. Concept Cards for Co-Species Care
forms of intelligence. concept cards for co-species care. by kaajal modi 2 forms of intelligence. concept cards for co-species care. 3 contents. the cards. 4 card footnotes. 7 cross-species collaborators. 34 the team. 39 symbols & symbioses. 41 Forms of Intelligence is an ongoing project led by Knowle references. 47 West Media Centre exploring how expanded understandings of ‘intelligence’ can inspire the design and creation of new technologies and systems for the benefit of all. Commissioned by Knowle West Media Centre and Digital Cultures Research Centre © September 2020 4 forms of intelligence. concept cards for co-species care. 5 who are they for? the The cards are designed to act as conversation starters and inspirational prompts. for anyone involved in a making process. How often do you challenge yourself to stop and think cards. differently, to see from a different perspective, or think deeply about who or what is being impacted by your decisions? The cards are draw on different forms of animal, plant and microbial intelligence that often get overlooked in human- what are they? led projects and processes. They also invite you to reflect on The cards and this booklet were commissioned by Knowle the humans who are connected to these organisms, whether West Media Centre as part of the Forms of Intelligence directly, by working with them, or indirectly, by sharing land project, and were made by artist and researcher Kaajal Modi. and resources with them. The cards have been made in response to and are inspired by If you are looking for inspiration and ready to open your a series of collaborative workshops between eight people from mind to think more expansively about all living beings, then Knowle West, Bristol, Kent, and Colombia with expertise in these cards are for you. -
Genome-Inspired Chemical Exploration of Marine Fungus Aspergillus Fumigatus MF071
marine drugs Article Genome-Inspired Chemical Exploration of Marine Fungus Aspergillus fumigatus MF071 Jianying Han 1,2 , Miaomiao Liu 1 , Ian D. Jenkins 1, Xueting Liu 3, Lixin Zhang 2,3, Ronald J. Quinn 1,* and Yunjiang Feng 1,* 1 Griffith Institute for Drug Discovery, Griffith University, Brisbane, QLD 4111, Australia; jianying.han@griffithuni.edu.au (J.H.); miaomiao.liu@griffith.edu.au (M.L.); i.jenkins@griffith.edu.au (I.D.J.) 2 Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; [email protected] 3 State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China; [email protected] * Correspondence: r.quinn@griffith.edu.au (R.J.Q.); y.feng@griffith.edu.au (Y.F.); Tel.: +61-7-3735-6006 (R.J.Q.); +61-7-3735-8367 (Y.F.) Received: 8 June 2020; Accepted: 2 July 2020; Published: 6 July 2020 Abstract: The marine-derived fungus Aspergillus fumigatus MF071, isolated from sediment collected from the Bohai Sea, China, yielded two new compounds 19S,20-epoxy-18-oxotryprostatin A (1) and 20-hydroxy-18-oxotryprostatin A (2), in addition to 28 known compounds (3–30). The chemical structures were established on the basis of 1D, 2D NMR and HRESIMS spectroscopic data. This is the first report on NMR data of monomethylsulochrin-4-sulphate (4) and pseurotin H (10) as naturally occurring compounds. Compounds 15, 16, 20, 23, and 30 displayed weak antibacterial activity (minimum inhibitory concentration: 100 µg/mL). Compounds 18 and 19 exhibited strong activity against S. -
Adaptations for Survival: Symbioses, Camouflage
Adaptations for Survival: Symbioses, Camouflage & Mimicry OCN 201 Biology Lecture 11 http://www.oceanfootage.com/stockfootage/Cleaning_Station_Fish/ http://www.berkeley.edu/news/media/releases/2005/03/24_octopus.shtml Symbiosis • Parasitism - negative effect on host • Commensalism - no effect on host • Mutualism - both parties benefit Often involves food but benefits may also include protection from predators, dispersal, or habitat Parasites Leeches (Segmented Worms) Tongue Louse (Crustacean) Nematodes (Roundworms) Whale Barnacles & Lice Commensalism or Parasitism? Commensalism or Mutualism? http://magma.nationalgeographic.com/ http://www.scuba-equipment-usa.com/marine/APR04/ Mutualism Cleaner Shrimp http://magma.nationalgeographic.com/ Anemone Hermit Crab http://www.scuba-equipment-usa.com/marine/APR04/ Camouflage Countershading Sharks Birds Countershading coloration of the Caribbean reef shark © George Ryschkewitsch Fish JONATHAN CHESTER Mammals shiftingbaselines.org/blog/big_tuna.jpg http://www.nmfs.noaa.gov/pr/images/cetaceans/orca_spyhopping-noaa.jpg Adaptive Camouflage Camouflage http://www.cspangler.com/images/photos/aquarium/weedy-sea-dragon2.jpg Camouflage by Mimicry Mimicry • Batesian: an edible species evolves to look similar to an inedible species to avoid predation • Mullerian: two or more inedible species all evolve to look similar maximizing efficiency with which predators learn to avoid them Batesian Mimicry An edible species evolves to resemble an inedible species to avoid predators Pufferfish (poisonous) Filefish (non-poisonous) -
Macromolecular Networks and Intelligence in Microorganisms
HYPOTHESIS AND THEORY ARTICLE published: 22 July 2014 doi: 10.3389/fmicb.2014.00379 Macromolecular networks and intelligence in microorganisms Hans V. Westerhoff 1,2,3 †, Aaron N. Brooks 4,5 †, Evangelos Simeonidis 4,6 †, Rodolfo García-Contreras 7†, Fei He 8 , Fred C. Boogerd 1, Victoria J. Jackson 9 , Valeri Goncharuk 10,11,12 and Alexey Kolodkin 4,6 * 1 Department of Molecular Cell Physiology, Vrije Universiteit Amsterdam, Amsterdam, Netherlands 2 Manchester Centre for Integrative Systems Biology, The University of Manchester, Manchester, UK 3 Synthetic Systems Biology, University of Amsterdam, Amsterdam, Netherlands 4 Institute for Systems Biology, Seattle, WA, USA 5 Molecular and Cellular Biology Program, University of Washington, Seattle, WA, USA 6 Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg 7 Departamento de Bioquímica, Instituto Nacional de Cardiología, Mexico City, Mexico 8 Department of Automatic Control and Systems Engineering, The University of Sheffield, Sheffield, UK 9 School of Computer Science, The University of Manchester, Manchester, UK 10 Netherlands Institute for Neuroscience, Amsterdam, Netherlands 11 Russian Cardiology Research Center, Moscow, Russia 12 Department of Medicine, Center for Alzheimer and Neurodegenerative Research, University of Alberta, Edmonton, AB, Canada Edited by: Living organisms persist by virtue of complex interactions among many components Kevin Bradley Clark, Veterans Affairs organized into dynamic, environment-responsive networks that span multiple scales and Greater Los Angeles Healthcare System, USA dimensions. Biological networks constitute a type of information and communication technology (ICT): they receive information from the outside and inside of cells, integrate Reviewed by: Francisca Fernández-Piñas, and interpret this information, and then activate a response. -
This Process Wherein 2 Organisms Help One Another Is Often Called Symbiosis Or Mutualism
This process wherein 2 organisms help one another is often called symbiosis or mutualism. The terms are often used interchangeably. Technically, mutualism is an ecological interaction between at least two species (=partners) where both partners benefit from the relationship. Symbiosis on the other hand is defined as an ecological interaction between at least two species (=partners) where there is persistent contact between the partners. Coral is an extremely important habitat. Coral is an animal which has a dinoflagellate living in it called Zooxanthellae You can see where the Zooxanthellae live in the coral and these provide oxygen to the coral which provides protection to the Zooxanthellae If the coral is stressed, the Zooxanthellae leave the coral and the coral becomes “bleached” and may die if the Zooxanthellae do not return. Fish have evolved so that the coral provides them with a kind of “background” against which they become harder for predators to see them WORMS Several different phyla Nematodes, Platyhelminthes, annelids etc) . Some people do eat worms but several kinds are parasitic and there are dangers in doing this. Many marine animals will eat worms. ECHINODERMS Some examples: Star fish, sea cucumbers, crinoids Possible to eat, but not much meat! More likely eaten by other animals. Interesting regenerative powers. ARTHROPODS (joint legged animals) Some examples: Crabs, lobsters and so on. Some are edible. Insects are arthropods and many people in the world eat them. Horseshoe crabs, are here too but are more closely related to the spiders than to the crabs proper. Lobster crab Barnacles Horseshoe crab MOLLUSKS Examples: Clams, mussels , snails Clams and other mollusks are regularly eaten around the world. -
The Ecology of Mutualism
Annual Reviews www.annualreviews.org/aronline AngRev. Ecol. Syst. 1982.13:315--47 Copyright©1982 by Annual Reviews lnc. All rightsreserved THE ECOLOGY OF MUTUALISM Douglas 1t. Boucher Departementdes sciences biologiques, Universit~ du Quebec~ Montreal, C. P. 8888, Suet. A, Montreal, Quebec, CanadaH3C 3P8 Sam James Departmentof Ecologyand Evolutionary Biology, University of Michigan, Ann Arbor, Michigan, USA48109 Kathleen H. Keeler School of Life Sciences, University of Nebraska,Lincoln, Nebraska,USA 68588 INTRODUCTION Elementaryecology texts tell us that organismsinteract in three fundamen- tal ways, generally given the namescompetition, predation, and mutualism. The third memberhas gotten short shrift (264), and even its nameis not generally agreed on. Terms that may be considered synonyms,in whole or part, are symbiosis, commensalism,cooperation, protocooperation, mutual aid, facilitation, reciprocal altruism, and entraide. Weuse the term mutual- by University of Kanas-Lawrence & Edwards on 09/26/05. For personal use only. ism, defined as "an interaction betweenspecies that is beneficial to both," Annu. Rev. Ecol. Syst. 1982.13:315-347. Downloaded from arjournals.annualreviews.org since it has both historical priority (311) and general currency. Symbiosis is "the living together of two organismsin close association," and modifiers are used to specify dependenceon the interaction (facultative or obligate) and the range of species that can take part (oligophilic or polyphilic). We make the normal apologies concerning forcing continuous variation and diverse interactions into simple dichotomousclassifications, for these and all subsequentdefinitions. Thus mutualism can be defined, in brief, as a -b/q- interaction, while competition, predation, and eommensalismare respectively -/-, -/q-, and -t-/0. There remains, however,the question of howto define "benefit to the 315 0066-4162/82/1120-0315 $02.00 Annual Reviews www.annualreviews.org/aronline 316 BOUCHER, JAMES & KEELER species" without evoking group selection. -
AI-To-Microbe Architecture: Simulation, Intelligence, Consciousness
Dennis Dollens Universitat Internacional de Catalunya, Barcelona. ESARQ [email protected] AI-to-Microbe Architecture: Simulation, Intelligence, Consciousness Abstract Keywords This paper probes questions of how big machines— Metabolic Architecture, Artificial Intelligence (AI), buildings—can function as hybrid metabolic/AI ALife, Alan Turing, Ludwig Wittgenstein, Computational organisms. Focusing on AI, artificial life (ALife), and Simulation. microbial intelligence I look through the lens of Ludwig Wittgenstein’s Tractatus and Alan Turing’s algorithmic 1. Propositions Toward Metabolic plant simulations to source modernist theory for Architectures biointelligent architectures. I’m using scant records and testimony interpreted through each thinker’s writings, Research strategies to regulate exploratory sets of architecture, and/or simulations. This text is then a generative design actions are called upon here for device for considering ways-of-being within, and ways- reasoning the inclusion of AI, synthetic life, and bio- of-thinking about, theory/practice for the fusion of algorithmic generation into the production of metabolic architectures. These exploratory tactics underwrite biological-to-biosynthetic intelligences (microbes, plants, animals, AI, machines.) Resulting theory thereafter hypothesizing biointelligent buildings as parts of nature. supports the development of bioremedial environmental Therefore, to link theory and observation I evolve cleanup addressing climate change. My proposition then strategies for the investigation of matter and forces deploys biomimetic and laboratory data to nurture starting with symbolic languages to sort types of metabolically driven intelligences partnered with AI intelligence. in the production of architectures. That ontological pathway stems from machine learning, bio-surveillance, Specifically, concepts-terms such as “atomic facts,” and digital simulation at object, agent, and urban scales. -
Reticulate Evolution Everywhere
Reticulate Evolution Everywhere Nathalie Gontier Abstract Reticulation is a recurring evolutionary pattern found in phylogenetic reconstructions of life. The pattern results from how species interact and evolve by mechanisms and processes including symbiosis; symbiogenesis; lateral gene transfer (that occurs via bacterial conjugation, transformation, transduction, Gene Transfer Agents, or the movements of transposons, retrotransposons, and other mobile genetic elements); hybridization or divergence with gene flow; and infec- tious heredity (induced either directly by bacteria, bacteriophages, viruses, pri- ons, protozoa and fungi, or via vectors that transmit these pathogens). Research on reticulate evolution today takes on inter- and transdisciplinary proportions and is able to unite distinct research fields ranging from microbiology and molecular genetics to evolutionary biology and the biomedical sciences. This chapter sum- marizes the main principles of the diverse reticulate evolutionary mechanisms and situates them into the chapters that make up this volume. Keywords Reticulate evolution · Symbiosis · Symbiogenesis · Lateral Gene Transfer · Infectious agents · Microbiome · Viriome · Virolution · Hybridization · Divergence with gene flow · Evolutionary patterns · Extended Synthesis 1 Reticulate Evolution: Patterns, Processes, Mechanisms According to the Online Etymology Dictionary (http://www.etymonline.com), the word reticulate is an adjective that stems from the Latin words “re¯ticulātus” (having a net-like pattern) and re¯ticulum (little net). When scholars identify the evolution of life as being “reticulated,” they first and foremost refer to a recurring evolutionary pattern. N. Gontier (*) AppEEL—Applied Evolutionary Epistemology Lab, University of Lisbon, Lisbon, Portugal e-mail: [email protected] © Springer International Publishing Switzerland 2015 1 N. Gontier (ed.), Reticulate Evolution, Interdisciplinary Evolution Research 3, DOI 10.1007/978-3-319-16345-1_1 2 N. -
2015 Undergraduate Research Symposium
1 2 9:15am Opening Remarks UW1-210 James Anderson, ASUWB President 9:30am – 12:00pm Oral Session 1 UW1-210 10:00am – 12:00pm Poster Session UW1-2nd floor Vista UW1-3rd Floor Vista and Hallway 12:00pm – 1:30pm Panel Discussion UW1-361 Ask a Student Researcher 1:00pm – 3:00pm Oral Session 2 Digital Future Lab Discovery Hall 150 1:00pm – 3:00pm Poster Session, Demo and Playtesting Digital Future Lab Discovery Hall 150 1:30pm – 4:00pm Poster Session UW1-2nd floor Vista UW1-3rd Floor Vista and Hallway 2:45pm – 4:00pm Oral Session 3 UW1-202 4:00pm – 5:00pm Reception and Gallery Opening 4:00pm – 4:15pm Remarks & Student Success Center Art Gallery Opening Congresswoman Suzan DelBene 4:15pm – 4:30pm Presentation of Faculty Mentor Award Chancellor Wolf Yeigh 3 Oral Presentations Oral Session 1: 9:30am – 12:00pm UW1-210 Oral Session 2: 1:00pm – 3:00pm Digital Future Lab - Discovery Hall 150 Oral Session 3: 2:45pm – 4:00pm UW1-202 4 Oral Session 1: UW1-210 9:30am – 12pm 9:30am-9:45am Gaze and its Relation to Effective Communication in Software Engineering Collaboration Environments Author(s): Hasit Mistry, Fida Al-Sughayer, Minaashi Kalyanaraman Mentor: David Socha Abstract: Research to establish links between perceived gaze and attention, thoughts or facial display of emotions has been conducted in the past in controlled environments or laboratories, but very little is known about the relation between gaze and effective communication. The dataset at our disposal is unique in nature. This dataset consists of video and audio files of software developers working in their natural environment. -
OCN201 – Biology Section – Fall 2010
OCN201 – Biology Section – Fall 2010 *THERE ARE 66 QUESTIONS ON THIS EXAM* OCN201 – Biology Section – Fall 2010 Last Name__________________________________________ First Name__________________________________________ Student ID#_________________________________________ Signature___________________________________________ I hereby authorize the use of my student ID number for the purpose of posting my grades in OCN 201. Please sign above; your grades cannot be posted without a signature! Please make sure your ID is coded correctly on the Scan Sheet Answer 1-60 on the computer-scan sheet ONLY (1 point each). Use a dark (#2) pencil only, and make marks neatly within the circles. If you change an answer, erase completely. Answer 61 – 66 on this exam sheet ONLY OCN201 – Biology Section – Fall 2010 *THERE ARE 66 QUESTIONS ON THIS EXAM* TRUE/FALSE – ANSWER ON SCAN SHEET (A = true; B = false) Indicate whether the statement is true or false. ____ 1. Biomass increases with depth of the ocean ____ 2. Corals are only found in the sunlit tropics ____ 3. Herbivores eat fish ____ 4. Zooxanthellae are coral parasites ____ 5. The Darwin Point refers to how Atolls are formed ____ 6. Global warming is linked to population increases ____ 7. The pH of the oceans is increasing ____ 8. Only invertebrates are known to filter feed ____ 9. Sponges are animals ____ 10. Deoxyribonucleic Acid is also known as RNA ____ 11. Polar bears are one of the main predators of penguins ____ 12. Animals that live in the water column are called Benthic animals ____ 13. Large seaweed is the most important primary producer in the ocean ____ 14. -
Unit Three Single-Celled Organisms Michelle Wood Associate Professor
Unit Three Single-celled Organisms Michelle Wood Associate Professor Department of Biology University of Oregon Ph.D. in Zoology University of Georgia Michelle attended the University of Corpus Christi where she earned B.A. degrees in Biology and Speech. After graduating from the University of Georgia with a Ph.D., she continued her work as a postdoctoral student at the University of Chicago. She studied genetics and the evolutionary ecology of recently discovered photosynthetic organisms. After her postdoc, she continued as part of the research faculty in Ecology and Evolution Department until 1990. She then moved to the University of Oregon where she is now an Associate Professor. Dr. Wood’s research interests include studying picocyanobacteria from an evolutionary viewpoint. She is looking at how these microorganisms can survive in a wide range of marine environments. For instance, in the Arabian Sea, she and her student, Nelson Sherry, found that these organisms could reproduce several times a day and reach population sizes of more than a million cells per milliliter. These were free-living picocyanobacteria that bloomed during the summer Monsoon season. In the winter she found many examples of picocyanobacteria living symbiotically with dinoflagellates. She would like the students to know that people who study the ocean are a community of creative, curious, and wonderful people. She says, “If you are a student interested in ocean science, rest assured that there are many wonderful people out here who want to help you follow your dreams.” ©Project Oceanography 75 Spring 2002 Unit Three Single-celled Organisms Unit III Single-celled Organisms On the cutting edge… Dr.