Karyotype Analysis
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Pedigrees and Karyotypes Pedigree
Pedigrees and Karyotypes Pedigree A pedigree shows the relationships within a family and it helps to chart how one gene can be passed on from generation to generation. Pedigrees are tools used by genetic researchers or counselors to identify a genetic condition running through a family, they aid in making a diagnosis, and aid in determining who in the family is at risk for genetic conditions. On a pedigree: A circle represents a female A square represents a male A horizontal line connecting a male and female represents a marriage A vertical line and a bracket connect the parents to their children A circle/square that is shaded means the person HAS the trait. A circle/square that is not shaded means the person does not have the trait. Children are placed from oldest to youngest. A key is given to explain what the trait is. Marriage Male-DAD Female-MOM Has the trait Male-Son Female-daughter Female-daughter Male- Son Oldest to youngest Steps: ff Ff •Identify all people who have the trait. •For the purpose of this class all traits will be given to you. In other instances, you would have to determine whether or not the trait is autosomal dominant, autosomal recessive, or sex- linked. •In this example, all those who have the trait are homozygous recessive. •Can you correctly identify all genotypes of this family? ff ff Ff Ff •F- Normal •f- cystic fibrosis Key: affected male affected female unaffected male unaffected female Pp Pp PKU P- Unaffected p- phenylketonuria PP or Pp pp Pp pp pp Pp Pp Key: affected male affected female unaffected male unaffected female H-huntington’s hh Hh disease h-Unaffected Hh hh Hh hh Hh hh hh Key: affected male affected female unaffected male unaffected female Sex-Linked Inheritance Colorblindness Cy cc cy Cc Cc cy cy Key: affected male affected female unaffected male unaffected female Karyotypes To analyze chromosomes, cell biologists photograph cells in mitosis, when the chromosomes are fully condensed and easy to see (usually in metaphase). -
Phenotype Manifestations of Polysomy X at Males
PHENOTYPE MANIFESTATIONS OF POLYSOMY X AT MALES Amra Ćatović* &Centre for Human Genetics, Faculty of Medicine, University of Sarajevo, Čekaluša , Sarajevo, Bosnia and Herzegovina * Corresponding author Abstract Klinefelter Syndrome is the most frequent form of male hypogonadism. It is an endocrine disorder based on sex chromosome aneuploidy. Infertility and gynaecomastia are the two most common symptoms that lead to diagnosis. Diagnosis of Klinefelter syndrome is made by karyotyping. Over years period (-) patients have been sent to “Center for Human Genetics” of Faculty of Medicine in Sarajevo from diff erent medical centres within Federation of Bosnia and Herzegovina with diagnosis suspecta Klinefelter syndrome, azoo- spermia, sterilitas primaria and hypogonadism for cytogenetic evaluation. Normal karyotype was found in (,) subjects, and karyotype was changed in (,) subjects. Polysomy X was found in (,) examinees. Polysomy X was expressed at the age of sexual maturity in the majority of the cases. Our results suggest that indication for chromosomal evaluation needs to be established at a very young age. KEY WORDS: polysomy X, hypogonadism, infertility Introduction Structural changes in gonosomes (X and Y) cause different distribution of genes, which may be exhibited in various phenotypes. Numerical aberrations of gonosomes have specific pattern of phenotype characteristics, which can be classified as clini- cal syndrome. Incidence of gonosome aberrations in males is / male newborn (). Klinefelter syndrome is the most common chromosomal disorder associated with male hypogonadism. According to different authors incidence is / male newborns (), /- (), and even / (). Very high incidence indicates that the zygotes with Klinefelter syndrome are more vital than those with other chromosomal aberrations. BOSNIAN JOURNAL OF BASIC MEDICAL SCIENCES 2008; 8 (3): 287-290 AMRA ĆATOVIĆ: PHENOTYPE MANIFESTATIONS OF POLYSOMY X AT MALES In , Klinefelter et al. -
Biol 1020: Chromosomal Genetics
Ch. 15: Chromosomal Abnormalities Abnormalities in Chromosomal Number Abnormalities in Chromosomal Structure: Rearrangements Fragile Sites . • Define: – nondisjunction – polyploidy – aneupoidy – trisomy – monosomy . Abnormalities in chromosomal number How does it happen? . Abnormalities in chromosomal number nondisjunction - mistake in cell division where chromosomes do not separate properly in anaphase usually in meiosis, although in mitosis occasionally in meiosis, can occur in anaphase I or II . Abnormalities in chromosomal number polyploidy – complete extra sets (3n, etc.) – fatal in humans, most animals aneuploidy – missing one copy or have an extra copy of a single chromosome three copies of a chromosome in your somatic cells: trisomy one copy of a chromosome in your somatic cells: monosomy most trisomies and monosomies are lethal well before birth in humans; exceptions will be covered . Abnormalities in chromosomal number generally, in humans autosomal aneuploids tend to be spontaneously aborted over 1/5 of human pregnancies are lost spontaneously after implantation (probably closer to 1/3) chromosomal abnormalities are the leading known cause of pregnancy loss data indicate that minimum 10-15% of conceptions have a chromosomal abnormality at least 95% of these conceptions spontaneously abort (often without being noticed) . • Define: – nondisjunction – polyploidy – aneupoidy – trisomy – monosomy . • Describe each of the aneuploidies that can be found in an appreciable number of human adults (chromosomal abnormality, common name of the syndrome if it has one, phenotypes) . aneuploidy in human sex chromosomes X_ female (Turner syndrome) short stature; sterile (immature sex organs); often reduced mental abilities about 1 in 2500 human female births XXY male (Klinefelter syndrome) often not detected until puberty, when female body characteristics develop sterile; sometimes reduced mental abilities; testosterone shots can be used as a partial treatment; about 1 in 500 human male births . -
Dr. Fern Tsien, Dept. of Genetics, LSUHSC, NO, LA Down Syndrome
COMMON TYPES OF CHROMOSOME ABNORMALITIES Dr. Fern Tsien, Dept. of Genetics, LSUHSC, NO, LA A. Trisomy: instead of having the normal two copies of each chromosome, an individual has three of a particular chromosome. Which chromosome is trisomic determines the type and severity of the disorder. Down syndrome or Trisomy 21, is the most common trisomy, occurring in 1 per 800 births (about 3,400) a year in the United States. It is one of the most common genetic birth defects. According to the National Down Syndrome Society, there are more than 400,000 individuals with Down syndrome in the United States. Patients with Down syndrome have three copies of their 21 chromosomes instead of the normal two. The major clinical features of Down syndrome patients include low muscle tone, small stature, an upward slant to the eyes, a single deep crease across the center of the palm, mental retardation, and physical abnormalities, including heart and intestinal defects, and increased risk of leukemia. Every person with Down syndrome is a unique individual and may possess these characteristics to different degrees. Down syndrome patients Karyotype of a male patient with trisomy 21 What are the causes of Down syndrome? • 95% of all Down syndrome patients have a trisomy due to nondisjunction before fertilization • 1-2% have a mosaic karyotype due to nondisjunction after fertilization • 3-4% are due to a translocation 1. Nondisjunction refers to the failure of chromosomes to separate during cell division in the formation of the egg, sperm, or the fetus, causing an abnormal number of chromosomes. As a result, the baby may have an extra chromosome (trisomy). -
Cytogenetics, Chromosomal Genetics
Cytogenetics Chromosomal Genetics Sophie Dahoun Service de Génétique Médicale, HUG Geneva, Switzerland [email protected] Training Course in Sexual and Reproductive Health Research Geneva 2010 Cytogenetics is the branch of genetics that correlates the structure, number, and behaviour of chromosomes with heredity and diseases Conventional cytogenetics Molecular cytogenetics Molecular Biology I. Karyotype Definition Chromosomal Banding Resolution limits Nomenclature The metaphasic chromosome telomeres p arm q arm G-banded Human Karyotype Tjio & Levan 1956 Karyotype: The characterization of the chromosomal complement of an individual's cell, including number, form, and size of the chromosomes. A photomicrograph of chromosomes arranged according to a standard classification. A chromosome banding pattern is comprised of alternating light and dark stripes, or bands, that appear along its length after being stained with a dye. A unique banding pattern is used to identify each chromosome Chromosome banding techniques and staining Giemsa has become the most commonly used stain in cytogenetic analysis. Most G-banding techniques require pretreating the chromosomes with a proteolytic enzyme such as trypsin. G- banding preferentially stains the regions of DNA that are rich in adenine and thymine. R-banding involves pretreating cells with a hot salt solution that denatures DNA that is rich in adenine and thymine. The chromosomes are then stained with Giemsa. C-banding stains areas of heterochromatin, which are tightly packed and contain -
Mitosis Meiosis Karyotype
POGIL Cell Biology Activity 7 – Meiosis/Gametogenesis Schivell MODEL 1: karyotype Meiosis Mitosis 1 POGIL Cell Biology Activity 7 – Meiosis/Gametogenesis Schivell MODEL 2, Part 1: Spermatogenesis The trapezoid below represents a small portion of the wall of a "seminiferous tubule" within the testis. The cells in each of the panels are all originally derived from the single cell in panel 1. 1 2 3 Outside of tubule Lumen of tubule 4 5 6 7 8 9 2 POGIL Cell Biology Activity 7 – Meiosis/Gametogenesis Schivell MODEL 2, Part 2: vas epididymis deferens testis (plural: testes) seminiferous tubules (cut) Courtesy of: Dr. E. Kent Christensen, U. of Michigan lumen of seminiferous tubule sperm This portion shown expanded in part 1 of Model 2 3 POGIL Cell Biology Activity 7 – Meiosis/Gametogenesis Schivell MODEL 3: Oogenesis This is a time lapse of an ovary showing one "follicle" as it develops from immaturity to ovulation. The follicle starts in panel 1 as a small sphere of "follicle cells" surrounding the oocyte. In each panel, chromosomes within the oocyte are shown as an inset. (There are actually thousands of follicles in each mammalian ovary). 1 2 3 4 5 6 7 4 POGIL Cell Biology Activity 7 – Meiosis/Gametogenesis Schivell Model 1 questions: 1. Using the same type of cartoon as model 1, draw an "unreplicated", condensed chromosome. 2. Draw a replicated, condensed chromosome: 3. Circle a homologous pair in the karyotype. Remember that one of these chromosomes came from the male parent and the other from the female parent. These two chromosomes carry the same genes! (But can have different alleles on each homolog.) 4. -
MITOTIC NONDISJUNCTION in the CASE of INTERCHANGES INVOLVING the B-TYPE CHROMOSOME in MAIZE' NTERCHANGES Between the B-Type Ch
MITOTIC NONDISJUNCTION IN THE CASE OF INTERCHANGES INVOLVING THE B-TYPE CHROMOSOME IN MAIZE’ HERSCHEL ROMAN University of Washington, Seattle, Washington Received April 19, 1947 NTERCHANGES between the B-type chromosome and members of the I basic set (A-type chromosomes) in maize provide a means of clarifying the anomalous behavior of the B-type itself. They also make possible a method whereby plants deficient for a specific A-type segment or carrying the segment as a duplication may be regularly produced for use in various cytogenetic studies. The characteristics of the B-type have been described in detail by RAN- DOLPH (1941). The chromosome occurs as a supernumerary in many strains of maize. Within a strain, the number of B-types may vary considerably from plant to plant. RANDOLPH(1928) found a range of zero to eight among 43 plants of the Black Mexican variety. The chromosome does not produce a specific genetic effect even when present in relatively large numbers; a plant devoid of B-types is not noticeably different in appearance from one carrying as many as ten (RANDOLPH1941). The source of the variability in B chromosome number within a strain has been investigated in crosses in which only one of the parents furnished the B-types. The results of two such crosses and their reciprocals are given in table I. On an orthodox basis, the progeny from these crosses should not have more than one B chromosome. Each of the crosses, however, yielded plants with two or more B-types and the proportion of these exceptional plants was particularly high when the B-types were transmitted by the male parent (i.e., in the OBX IB and OB X 2B crosses). -
Comprehensive Chromosomal and Mitochondrial Copy Number Profiling in Human IVF Embryos
ARTICLE IN PRESS 1bs_bs_query Q2 Article 2bs_bs_query 3bs_bs_query Comprehensive chromosomal and mitochondrial copy 4bs_bs_query 5bs_bs_query number profiling in human IVF embryos 6bs_bs_query Q1 a,1, a,1 a a 7bs_bs_query Wei Shang *, Yunshan Zhang , Mingming Shu , Weizhou Wang , a a b b, b b 8bs_bs_query Likun Ren , Fu Chen , Lin Shao , Sijia Lu *, Shiping Bo , Shujie Ma , b 9bs_bs_query Yumei Gao a 10bs_bs_query Assisted Reproductive Centre of the Department of Gynaecology and Obstetrics, PLA Naval General Hospital, 11 bs_bs_query Haidian District, Beijing 100048, China b 12bs_bs_query Yikon Genomics, Fengxian District, Shanghai 201400, China 13bs_bs_query 14bs_bs_query 15bs_bs_query Wei Shang has been the Associate Chief Physician at the Department of Gynaecology and Obstetrics, PLA Naval 16bs_bs_query General Hospital, Beijing, since 2005. Her research interests focus on assisted reproduction technology, repro- 17bs_bs_query ductive endocrinology and ovary dysfunction. 18bs_bs_query 19bs_bs_query KEY MESSAGE 20bs_bs_query Using a validated approach called MALBAC-NGS, a comprehensive chromosomal and mitochondrial copy number 21bs_bs_query profiling in human embryos was conducted, and correlations of mitochondria quantity with maternal age and 22bs_bs_query embryo stage were observed. The strategy might be used to perform an advanced PGS targeting both chro- 23bs_bs_query mosomal and mitochondria copy numbers. 24bs_bs_query 25bs_bs_query ABSTRACT 26bs_bs_query 27bs_bs_query Single cell whole genome sequencing helps to decipher the genome -
Mosaic Chromosomal Aberrations in Synovial Fibroblasts of Patients With
Available online http://arthritis-research.com/content/3/5/319 Research article Mosaic chromosomal aberrations in synovial fibroblasts of patients with rheumatoid arthritis, osteoarthritis, and other inflammatory joint diseases commentary Raimund W Kinne*, Thomas Liehr†, Volkmar Beensen†, Elke Kunisch*, Thomas Zimmermann*, Heidrun Holland‡, Robert Pfeiffer§, Hans-Detlev Stahl§, Wolfgang Lungershausen¶, Gert Hein††, Andreas Roth‡‡, Frank Emmrich§, Uwe Claussen† and Ursula G Froster‡ *Experimental Rheumatology Unit, Friedrich Schiller University Jena, Jena, Germany †Institute of Human Genetics and Anthropology, Friedrich Schiller University Jena, Jena, Germany ‡Institute of Human Genetics, University of Leipzig, Leipzig, Germany §Institute of Clinical Immunology and Transfusion Medicine, University of Leipzig, Leipzig, Germany ¶Department of Traumatology, Friedrich Schiller University Jena, Jena, Germany ††Clinic of Internal Medicine IV, Friedrich Schiller University Jena, Jena, Germany ‡‡Clinic of Orthopedics, Friedrich Schiller University Jena, Jena, Germany Correspondence: Raimund W Kinne, Experimental Rheumatology Unit, Friedrich Schiller University Jena, Winzerlaer Str. 10, D-07745 Jena, Germany; Tel. +49 3641 65 71 50; fax: +49 3641 65 71 52; e-mail: [email protected] review Received: 19 April 2001 Arthritis Res 2001, 3:319–330 Revisions requested: 31 May 2001 This article may contain supplementary data which can only be found Revisions received: 12 June 2001 online at http://arthritis-research.com/content/3/5/319 Accepted: 22 June 2001 © 2001 Kinne et al, licensee BioMed Central Ltd Published: 3 August 2001 (Print ISSN 1465-9905; Online ISSN 1465-9913) Abstract Chromosomal aberrations were comparatively assessed in nuclei extracted from synovial tissue, primary-culture (P-0) synovial cells, and early-passage synovial fibroblasts (SFB; 98% enrichment; P-1, P-4 [passage 1, passage 4]) from patients with rheumatoid arthritis (RA; n = 21), osteoarthritis (OA; reports n = 24), and other rheumatic diseases. -
Chromosome Translocation, Recombination, and Nondisjunction
Am. J. Hum. Genet. 58:1008-1016, 1996 The Impact of Imprinting: Prader-Willi Syndrome Resulting from Chromosome Translocation, Recombination, and Nondisjunction SuEllen Toth-Fejel,'"2 Susan Olson,",2 Kristine Gunter,'2' Franklin Quan," 3'4 Jan Wolford,3 Bradley W. Popovich,"3'4 and R. Ellen Magenis1,2 'Department of Molecular and Medical Genetics, 2Clinical and Research Cytogenetics Laboratories, and 3DNA Diagnostic Laboratory, Oregon Health Sciences University; and 4Shriners Hospital for Crippled Children, Portland Summary Several genetic mechanisms are responsible for the devel- Prader-Willi syndrome (PWS) is most often the result of opment of PWS. The majority (75%) of patients carry a deletion of bands qll.2-q13 of the paternally derived a deletion of the paternally derived chromosome i5qi1 - chromosome 15, but it also occurs either because of q13 (Ledbetter et al. 1981; Butler and Palmer 1983), maternal uniparental disomy (UPD) of this region or, with most nondeletion PWS patients having maternal rarely, from a methylation imprinting defect. A signifi- uniparental disomy (UPD) of chromosome 15 (Nicholls cant number of cases are due to structural rearrange- 1994). A small number of chromosomally normal pa- ments of the pericentromeric region of chromosome 15. tients carry an imprinting defect (Reis et al. 1994). PWS We report two cases of PWS with UPD in which there may be the clinical outcome of any chromosome 15 was a meiosis I nondisjunction error involving an altered structural change in which there has been a physical or chromosome 15 produced by both a translocation event functional loss of genetic material in the imprinted PWS between the heteromorphic satellite regions of chromo- critical region. -
Fate of Mitochondrial DNA in Human-Mouse Somatic Cell Hybrids (Density Gradient Centrifugation/Ethidium Bromide/Karyotype)
Proc. Nat. Acad. Sci. USA Vol. 69, No. 1, pp. 129-133, January 1972 Fate of Mitochondrial DNA in Human-Mouse Somatic Cell Hybrids (density gradient centrifugation/ethidium bromide/karyotype) BARBARA ATTARDI* AND GIUSEPPE ATTARDI* Centre de Gen6tique Molculaire, 91 Gif-sur-Yvette, France Communicated by Boris Ephrussi, November 3, 1971 ABSTRACT Several hybrid lines between human and In the present work, the fate of parental mit-DNA was mouse somatic cells, containing one or two complements of mouse chromosomes and a reduced complement of human investigated in several human-mouse hybrid cell lines. For chromosomes, have been examined for the presence of this analysis, advantage was taken of the possibility of re- mouse and human mitochondrial DNAs. For this analysis, solving mouse and human mit-DNAs on the basis of their advantage was taken of the fact that these two types of difference in buoyant density in CsCl gradients. Only mitochondrial DNA have a buoyant density difference in mouse-type mit-DNA was detected in all hybrid clones CsCl gradients of 0.008 g/cm'. In all the hybrid clones analyzed, which retained an average number of human examined, even in hybrids estimated conservatively to con- chromosomes estimated conservatively to vary from 5 tain an average of at least 23 residual human chromosomes to 23, only mitochondrial DNA of mouse character was per cell. detected. It seems likely that either repression of relevant human genes by the mouse genome or loss of human MATERIALS AND METHODS chromosomes is responsible for these results. If the latter explanation is true, since chromosome loss under the Cells and Media. -
IGA 8/E Chapter 15
17 Large-Scale Chromosomal Changes WORKING WTH THE FIGURES 1. Based on Table 17-1, how would you categorize the following genomes? (Letters H through J stand for four different chromosomes.) HH II J KK HH II JJ KKK HHHH IIII JJJJ KKKK Answer: Monosomic (2n–1) 7 chromosomes Trisomic (2n+1) 9 -II- Tetraploid (4n) 16 -II- 2. Based on Figure 17-4, how many chromatids are in a trivalent? Answer: There are 6 chromatids in a trivalent. 3. Based on Figure 17-5, if colchicine is used on a plant in which 2n = 18, how many chromosomes would be in the abnormal product? Answer: Colchicine prevents migration of chromatids, and the abnormal product of such treatment would keep all the chromatids (2n = 18) in one cell. 4. Basing your work on Figure 17-7, use colored pens to represent the chromosomes of the fertile amphidiploid. Answer: A fertile amphidiploids would be an organism produced from a hybrid with two different sets of chromosomes (n1 and n2), which would be infertile until some tissue undergoes chromosomal doubling (2 n1 + 2 n2) and such chromosomal set would technically become a diploid (each chromosome has its pair; therefore they could undergo meiosis and produce gametes). This could be a new species. Picture example: 3 pairs of chromosomes/ different lengths/ red for n1 = 3 384 Chapter Seventeen 4 chromosomes/ different lengths/ green for n2 = 4 Hybrid/ infertile: 7 chromosomes (n1+n2) Amphidiploids/ fertile: 14 chromosomes (pairs of n1 and n2) 5. If Emmer wheat (Figure 17-9) is crossed to another wild wheat CC (not shown), what would be the constitution of a sterile product of this cross? What amphidiploid could arise from the sterile product? Would the amphidiploid be fertile? Answer: Emmer wheat was domesticated 10,000 years ago, as a tetraploid with two chromosome sets (2n 1 + 2 n2 or AA + BB).