Relativistic Effects in Atoms and in Uranium Compounds
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A Protein Engineered to Bind Uranyl Selectively and with Femtomolar Affinity
ARTICLES PUBLISHED ONLINE: 26 JANUARY 2014 | DOI: 10.1038/NCHEM.1856 A protein engineered to bind uranyl selectively and with femtomolar affinity Lu Zhou1†, Mike Bosscher1†, Changsheng Zhang2,3†,SalihO¨ zc¸ubukc¸u1, Liang Zhang1, Wen Zhang1, Charles J. Li1, Jianzhao Liu1, Mark P. Jensen4, Luhua Lai2,3* and Chuan He1* 21 ∼ Uranyl (UO2 ), the predominant aerobic form of uranium, is present in the ocean at a concentration of 3.2 parts per 109 (13.7 nM); however, the successful enrichment of uranyl from this vast resource has been limited by the high concentrations of metal ions of similar size and charge, which makes it difficult to design a binding motif that is selective for uranyl. Here we report the design and rational development of a uranyl-binding protein using a computational screening process in the initial search for potential uranyl-binding sites. The engineered protein is thermally stable and offers very high affinity and selectivity for uranyl with a Kd of 7.4 femtomolar (fM) and >10,000-fold selectivity over other metal ions. We also demonstrated that the uranyl-binding protein can repeatedly sequester 30–60% of the uranyl in synthetic sea water. The chemical strategy employed here may be applied to engineer other selective metal-binding proteins for biotechnology and remediation applications. ranium is the key element for nuclear-energy production and Through billions of years of evolution nature has produced is important in many other applications. The most stable and strategies to recognize beneficial or toxic metal ions with high Urelevant uranium ion in aerobic environments is the uranyl sensitivity and selectivity. -
Hierarchically-Structured Metalloprotein Composite
ARTICLE There are amendments to this paper https://doi.org/10.1038/s41467-020-14709-y OPEN Hierarchically-structured metalloprotein composite coatings biofabricated from co-existing condensed liquid phases ✉ Franziska Jehle 1, Elena Macías-Sánchez1, Sanja Sviben1, Peter Fratzl1, Luca Bertinetti 1 & ✉ Matthew J. Harrington 1,2 1234567890():,; Complex hierarchical structure governs emergent properties in biopolymeric materials; yet, the material processing involved remains poorly understood. Here, we investigated the multi- scale structure and composition of the mussel byssus cuticle before, during and after for- mation to gain insight into the processing of this hard, yet extensible metal cross-linked protein composite. Our findings reveal that the granular substructure crucial to the cuticle’s function as a wear-resistant coating of an extensible polymer fiber is pre-organized in con- densed liquid phase secretory vesicles. These are phase-separated into DOPA-rich proto- granules enveloped in a sulfur-rich proto-matrix which fuses during secretion, forming the sub-structure of the cuticle. Metal ions are added subsequently in a site-specific way, with iron contained in the sulfur-rich matrix and vanadium coordinated by DOPA-catechol in the granule. We posit that this hierarchical structure self-organizes via phase separation of specific amphiphilic proteins within secretory vesicles, resulting in a meso-scale structuring that governs cuticle function. 1 Department of Biomaterials, Max Planck Institute of Colloids and Interfaces, 14424 Potsdam, -
Depleted Uranium Technical Brief
Disclaimer - For assistance accessing this document or additional information,please contact [email protected]. Depleted Uranium Technical Brief United States Office of Air and Radiation EPA-402-R-06-011 Environmental Protection Agency Washington, DC 20460 December 2006 Depleted Uranium Technical Brief EPA 402-R-06-011 December 2006 Project Officer Brian Littleton U.S. Environmental Protection Agency Office of Radiation and Indoor Air Radiation Protection Division ii iii FOREWARD The Depleted Uranium Technical Brief is designed to convey available information and knowledge about depleted uranium to EPA Remedial Project Managers, On-Scene Coordinators, contractors, and other Agency managers involved with the remediation of sites contaminated with this material. It addresses relative questions regarding the chemical and radiological health concerns involved with depleted uranium in the environment. This technical brief was developed to address the common misconception that depleted uranium represents only a radiological health hazard. It provides accepted data and references to additional sources for both the radiological and chemical characteristics, health risk as well as references for both the monitoring and measurement and applicable treatment techniques for depleted uranium. Please Note: This document has been changed from the original publication dated December 2006. This version corrects references in Appendix 1 that improperly identified the content of Appendix 3 and Appendix 4. The document also clarifies the content of Appendix 4. iv Acknowledgments This technical bulletin is based, in part, on an engineering bulletin that was prepared by the U.S. Environmental Protection Agency, Office of Radiation and Indoor Air (ORIA), with the assistance of Trinity Engineering Associates, Inc. -
Chapter 8 2013
described by Core Chapter 8 Electrons Wave Function e- filling spdf electronic configuration comprising (Orbital) Valence determined by Electrons described by Aufbau basis for Rules Periodic Quantum which involve Table Numbers which summarizes Orbital Pauli Hund’s which are Energy Exclusion Rule Periodic Properties Electron Configuration and Chemical Periodicity Quantum 4-quantum numbers specify the energy and location of Numbers electrons around a nucleus (all we can know). This numbers are the framework for the “electronic structure Orbital size of an atom”. Principal define & energy n = 1,2,3,.. s defines Name Symbol Permitted Values Property principal n positive integers (1,2,3...) orbital energy (size) Angular Orbital angular l orbital shape (0, 1, 2, and 3 momentum, l defines momentum integers from 0 to n-1 correspond to s, p, d, and f shape orbitals, respectively.) Magnetic Orbital magnetic integers from -l to 0 to +l orbital orientation in space defines ml ml orientation direction of e- spin spin m +1/2 or -1/2 Electron s Spin, ms defines spin Quantum Allowed Schrodinger’s equation gives an exact solution for H- Possible Orbitals Number Values atom, but does not for many electron-atoms. Electron- n Positive integers 1 2 3 electron repulsion in multi-electron split energy levels. 1,2,3,4.... Hydrogen Atom Multi-electron atoms 0 0 1 0 1 2 l 0 up to max Orbitals are of n-1 “degenerate” or Energy the same energy in Hydrogen! ml -l,...0...+l 0 0 -1 0 1 0 -1 0 1 -2-1 0 12 Orbital Name 1s 2s 2p 3s 3p 3d Electrons will Shapes or Boundry fill lowest Surface Plots energy orbitals first! Inner core electrons “shield” or “screen” outer 4-quantum numbers specify all the information we can know the energy electrons from the positive charge of the nucleus. -
A Structural and Spectroscopic Study of the First Uranyl Selenocyanate, [Et4n]3[UO2(Ncse)5]
inorganics Article A Structural and Spectroscopic Study of the First Uranyl Selenocyanate, [Et4N]3[UO2(NCSe)5] Stefano Nuzzo, Michelle P. Browne, Brendan Twamley, Michael E. G. Lyons and Robert J. Baker * School of Chemistry, Trinity College, University of Dublin, 2 Dublin, Ireland; [email protected] (S.N.); [email protected] (M.P.B.); [email protected] (B.T.); [email protected] (M.E.G.L.) * Correspondence: [email protected]; Tel.: +353-1-896-3501; Fax: +353-1-671-2826 Academic Editors: Stephen Mansell and Steve Liddle Received: 30 October 2015; Accepted: 4 February 2016; Published: 16 February 2016 Abstract: The first example of a uranyl selenocyanate compound is reported. The compound [Et4N]3[UO2(NCSe)5] has been synthesized and fully characterized by vibrational and multinuclear (1H, 13C{1H} and 77Se{1H}) NMR spectroscopy. The photophysical properties have also been recorded and trends in a series of uranyl pseudohalides discussed. Spectroscopic evidence shows that the U–NCSe bonding is principally ionic. An electrochemical study revealed that the reduced uranyl(V) species is unstable to disproportionation and a ligand based oxidation is also observed. The structure of [Et4N]4[UO2(NCSe)5][NCSe] is also presented and Se¨ ¨ ¨ H–C hydrogen bonding and Se¨ ¨ ¨ Se chalcogen–chalcogen interactions are seen. Keywords: uranyl; structural determination; photophysics 1. Introduction The chemistry of uranium in its highest oxidation state has held scientists fascination for a long 2+ period of time. The uranyl moiety, [UO2] , is well studied in aqueous phases due, in part, to relevance in the nuclear waste treatment. Moreover, the photophysical properties of uranyl were first used in ancient roman times in colored glass [1], whilst comprehensive understanding of the bonding, and therefore photophysical properties, has come from both experiment and theory. -
Procedure for Determining Uranium, Plutonium and Americium by Extraction-Chromatographic Procedures
Procedure for determining uranium, plutonium and americium by extraction-chromatographic procedures H-U/Pu/Am-AWASS-01 Authors: M. Beyermann D. Obrikat Federal coordinating office for drinking water, groundwater, wastewater, sludge, waste and wastewater of nuclear power plants (Leitstelle für die Überwachung der Radioaktivität in Trinkwasser, Grundwasser, Abwasser, Klärschlamm, Reststoffen und Abfällen) ISSN 1865-8725 Version October 2000 Procedures manual for monitoring of radioactive substances in the environment and of external radiation (Messanleitungen für die „Überwachung radioaktiver Stoffe in der Umwelt und externer Strahlung“) H-U/Pu/Am-AWASS-01-01 Procedure for determining uranium, plutonium and americium by means of extraction- chromatographic procedures 1 Scope This procedure serves to simultaneously determine the uranium isotopes U-234, U-235 and U-238, the plutonium isotopes Pu-238, Pu-239 and Pu-240, as well as the americium isotope Am-241 in samples of wastewater from nuclear facilities. It furthermore offers an option of determining the curium isotopes Cm-242 and Cm-244 without further effort. For determining Pu-241, reference is made to pro- cedure H-Pu-241-AWASS-01 of these measuring instructions. 2 Sampling As far as sampling is concerned, reference is made to procedure H-SPEKT- AWASS-01 of these measuring instructions. The sample of the wastewater to be analysed is acidified with ca. 10 ml of concentrated nitric acid (14 mol·l-1) per litre to a pH of about 1. The stability of the acidic reaction needs to be monitored, in particular if the sample is stored for an extended period of time. This procedure ensures that a detection limit of 0,05 Bq·l-1 for alpha-emitters is reached in a sample volume of 0,1 litres to 0,25 litres and thus complies with the nuclear safety standard 1504 of the Nuclear Safety Standards Commission (1). -
Anion Photoelectron Spectroscopic and Relativistic Coupled-Cluster Studies of − Uranyl Dichloride Anion, Uo2cl2 Mary Marshall, Zhaoguo Zhu, Junzi Liu, Kit H
Journal of Molecular Spectroscopy 379 (2021) 111496 Contents lists available at ScienceDirect Journal of Molecular Spectroscopy journal homepage: www.elsevier.com/locate/yjmsp Article Anion photoelectron spectroscopic and relativistic coupled-cluster studies of * uranyl dichloride anion, UO2Cl2 Mary Marshall, Zhaoguo Zhu, Junzi Liu, Kit H. Bowen, Lan Cheng < Department of Chemistry, The Johns Hopkins University, Baltimore, MD 21218, USA ARTICLEINFO ABSTRACT Keywords: A joint relativistic coupled-cluster and experimental photoelectron (PE) spectroscopic study of the uranyl Coupled-cluster * dichloride anion, UO2Cl2 , is reported. Sophisticated electronic-structure calculations predict the photodetach- Anion photoelectron * ment of UO2Cl to involve a U 5f electron and to be followed by significant geometry relaxation. Therefore, the Uranyl 2 adiabatic electron affinity (EAa) of the uranyl dichloride neutral molecule, UO2Cl2, and the vertical detachment * energy (VDE) of its anion, UO2Cl2 , provide valuable information about its uranium 5f orbital energies. The EAa value was computed to be 3.15 eV. The VDE value was calculated to be 3.55 eV by augmenting the computed EAa with a shift derived from a Franck–Condon simulation using coupled-cluster potential energy surfaces. The VDE, which corresponds to the highest intensity peak in the PE spectrum, was measured to be 3.69 , 0.20 eV, in good agreement with the computed value. The origin transition in the PE spectrum, whose electron binding energy corresponds to the EAa, was assigned to the feature at 3.2 , 0.20 eV, consistent with the computed EAa. 1. Introduction at 20323 cm*1 with nearly harmonic vibrational progressions at a frequency of 840 cm*1 [15]. -
Ultrasoft Pseudopotentials for Lanthanide Solvation Complexes: Core Or Valence Character of the 4F Electrons Rodolphe Pollet, C
Ultrasoft pseudopotentials for lanthanide solvation complexes: Core or valence character of the 4f electrons Rodolphe Pollet, C. Clavaguéra, J.-P. Dognon To cite this version: Rodolphe Pollet, C. Clavaguéra, J.-P. Dognon. Ultrasoft pseudopotentials for lanthanide solvation complexes: Core or valence character of the 4f electrons. Journal of Chemical Physics, American Institute of Physics, 2006, 124, pp.164103 - 1-6. 10.1063/1.2191498. hal-00083928 HAL Id: hal-00083928 https://hal.archives-ouvertes.fr/hal-00083928 Submitted on 21 Jul 2006 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Ultrasoft pseudopotentials for lanthanide solvation complexes: Core or valence character of the 4f electrons Rodolphe Pollet,∗ Carine Clavagu´era, Jean-Pierre Dognon Theoretical Chemistry Laboratory DSM/DRECAM/SPAM-LFP (CEA-CNRS URA2453) CEA/SACLAY, Bat. 522, 91191 GIF SUR YVETTE, FRANCE March 6, 2006 Abstract The 4f electrons of lanthanides, because of their strong localiza- tion in the region around the nucleus, are traditionally included in a pseudopotential core. This approximation is scrutinized by optimizing 3+ the structures and calculating the interaction energies of Gd (H2O) 3+ and Gd (NH3) microsolvation complexes within plane wave PBE cal- culations using ultrasoft pseudopotentials where the 4f electrons are included either in the core or in the valence space. -
Novel Heterometallic Uranyl-Transition Metal Materials: Structure, Topology, and Solid State Photoluminescence Properties † ‡ ‡ § Germań E
Article Cite This: Inorg. Chem. 2019, 58, 7243−7254 pubs.acs.org/IC Novel Heterometallic Uranyl-Transition Metal Materials: Structure, Topology, and Solid State Photoluminescence Properties † ‡ ‡ § Germań E. Gomez, J. August Ridenour, Nicole M. Byrne, Alexander P. Shevchenko, ‡ and Christopher L. Cahill*, † Instituto de Investigaciones en Tecnología Química (INTEQUI), Area de Química General e Inorganicá “Dr. G. F. Puelles,” Facultad de Química, Bioquímica y Farmacia, Chacabuco y Pedernera, Universidad Nacional de San Luis, Almirante Brown, 1455, 5700 San Luis, Argentina ‡ Department of Chemistry, The George Washington University, Science and Engineering Hall, 800 22nd Street, NW, Washington, DC 20052, United States § Samara Center for Theoretical Materials Science, Samara University, 34, Moskovskoye shosse, Samara, 443086, Russia *S Supporting Information ABSTRACT: Six new uranyl hybrid materials have been synthesized solvothermally ′ ′ ′ ′ ′′ utilizing the ligands 2,2 -bipyridine-3,3 -dicarboxylic acid (H2L) and 2,2 :6 ,2 -terpyridine (TPY). The six compounds are classified as either molecular complexes (I0O0 connectivity), · · [(UO2)(L)(TPY)] H2O(1), [Ni(TPY)2][(UO2)(L)2] 3H2O(2), and [Cu(TPY)2]- · − 0 3 [(UO2)(L)2] 3H2O(3), or 3D metal organic frameworks (MOFs, I O connectivity), · [Cu2(UO2)2(OH)(C2H3O2)(L)3(TPY)2] 6H2O(4), [Zn2(UO2)2(OH)(NO3)(C2H3O2)- · · (L)3(TPY)2] 4H2O(5), and Na[Ni(UO2)3(OH)(O)(L)3] 9H2O(6). A discussion of the influence of transition metal incorporation, chelating effects of the ligand, and synthesis conditions on the formation of uranyl materials is presented. The structure of compound 6 is of particular note due to large channel-like voids with a diameter of approximately 19.6 Å. -
Chapter 7 Periodic Properties of the Elements Learning Outcomes
Chapter 7 Periodic Properties of the Elements Learning Outcomes: Explain the meaning of effective nuclear charge, Zeff, and how Zeff depends on nuclear charge and electron configuration. Predict the trends in atomic radii, ionic radii, ionization energy, and electron affinity by using the periodic table. Explain how the radius of an atom changes upon losing electrons to form a cation or gaining electrons to form an anion. Write the electron configurations of ions. Explain how the ionization energy changes as we remove successive electrons, and the jump in ionization energy that occurs when the ionization corresponds to removing a core electron. Explain how irregularities in the periodic trends for electron affinity can be related to electron configuration. Explain the differences in chemical and physical properties of metals and nonmetals, including the basicity of metal oxides and the acidity of nonmetal oxides. Correlate atomic properties, such as ionization energy, with electron configuration, and explain how these relate to the chemical reactivity and physical properties of the alkali and alkaline earth metals (groups 1A and 2A). Write balanced equations for the reactions of the group 1A and 2A metals with water, oxygen, hydrogen, and the halogens. List and explain the unique characteristics of hydrogen. Correlate the atomic properties (such as ionization energy, electron configuration, and electron affinity) of group 6A, 7A, and 8A elements with their chemical reactivity and physical properties. Development of Periodic Table •Dmitri Mendeleev and Lothar Meyer (~1869) independently came to the same conclusion about how elements should be grouped in the periodic table. •Henry Moseley (1913) developed the concept of atomic numbers (the number of protons in the nucleus of an atom) 1 Predictions and the Periodic Table Mendeleev, for instance, predicted the discovery of germanium (which he called eka-silicon) as an element with an atomic weight between that of zinc and arsenic, but with chemical properties similar to those of silicon. -
Actinide Separation Inspired by Self-Assembled Metal-Polyphenolic Nanocages
Page 1 of 9 1 2 3 4 5 6 7 Actinide separation inspired by self-assembled metal-polyphenolic 8 9 nanocages 10 †, §, †, ‡, § † # † † ⊥ 11 Lei Mei, * Peng Ren, Qun-yan Wu, Yu-bin Ke, Jun-shan Geng, Kang Liu, Xue-qing Xing, 12 Zhi-wei Huang, † Kong-qiu Hu, † Ya-lan Liu, † Li-yong Yuan, † Guang Mo, ⊥ Zhong-hua Wu, ⊥ John K 13 Gibson, & Zhi-fang Chai, †, ¶ Wei-qun Shi †, * 14 15 † Laboratory of Nuclear Energy Chemistry, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China 16 ‡ State key Laboratory of Nuclear Resources and Environment, School of Chemistry, School of Nuclear Science and Engineering, 17 East China University of Technology, Nanchang 330013, China. 18 ⊥Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China 19 # Spallation Neutron Source Science Center, Dongguan 523803, China 20 ¶ Engineering Laboratory of Advanced Energy Materials, Ningbo Institute of Industrial Technology, Chinese Academy of Sciences, 21 Ningbo 315201, China 22 & Chemical Sciences Division, Lawrence Berkeley National Laboratory (LBNL), Berkeley, California 94720, USA 23 KEYWORDS: actinides; nano-extraction; uranyl-organic nanocage; self-assembly; pyrogallol[4]arene 24 25 26 ABSTRACT: The separation of actinides has a vital place in nuclear fuel reprocessing, recovery of radionuclides and 27 remediation of environmental contamination. Here we propose a new paradigm of nanocluster-based actinide separation, 28 namely nano-extraction, that can achieve efficient sequestration of uranium in an unprecedented form of giant coordination 29 nanocages using a cone-shaped macrocyclic pyrogallol[4]arene as the extractant. The U24-based hexameric 30 pyrogallol[4]arene nanocages with distinctive [U2PG2] binuclear units (PG = pyrogallol), that rapidly assembled in situ in 31 monophasic solvent, were identified by single-crystal XRD, MALDI-TOF-MS, NMR, and SAXS/SANS. -
Icp-Oes and Xas Investigation of the Phytoextraction of Lanthanides and Actinides from Aqueous Environmental Solutions 1J.G
ICP-OES AND XAS INVESTIGATION OF THE PHYTOEXTRACTION OF LANTHANIDES AND ACTINIDES FROM AQUEOUS ENVIRONMENTAL SOLUTIONS 1J.G. Parsons, 2J.L. Gardea-Torresdey, 1K.J. Tiemann, 1J.R. Peratta-Videa, 1E. Gomez, and 1J.H. Gonzalez 1Department of Environmental Science and Engineering, 500 W. University Ave., University of Texas at El Paso, El Paso TX. 79968; Phone: (915)747-5359; Fax: (915)747- 5748. 2Department of Chemistry, 500 W. University Ave, University of Texas at El Paso, El Paso, TX 79968; Phone: (915)747-5359; Fax: (915)747-5748. Abstract Use of nuclear power raises questions about nuclear waste, especially how it can be minimized and stored safely. One alternative is extraction and reprocessing of the uranium from the spent fuel. But the reprocessing of spent fuel is very expensive and requires use of ion exchange resins that cannot be reused. Some biomaterials have been studied for their ability to extract lanthanides and actinides, such as uranyl cation from solution. In this study, the extraction of uranyl nitrate, uranyl acetate, and europium nitrate from aqueous solution using an alfalfa biomaterial was investigated. Major factors affecting the sorption of cations from solution are pH, time, and interfering cations. Studies were performed to investigate each of the above parameters. In addition, capacity studies were performed for comparison purposes with common methods to extract these cations from solutions. To investigate the chemical environment where uranyl and europium cations were bound to the alfalfa biomass, X-ray absorption spectroscopy studies were performed. The X-Ray absorption near-edge structure showed that europium(III) and uranyl cations remained in the same oxidation state when bound to the biomass, with characteristic LIII-edge energies for uranyl and europium(III) of 17.172 keV and 6.981 keV, respectively.