Why Are DLS Measurements in High Concentration Solutions Difficult?
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An Efficient Scheme for Sampling Fast Dynamics at a Low Average Data
An efficient scheme for sampling fast dynamics at a low average data acquisition rate A. Philippe1, S. Aime1, V. Roger1, R. Jelinek1, G. Pr´evot1, L. Berthier1, L. Cipelletti1 1- Laboratoire Charles Coulomb (L2C), UMR 5221 CNRS-Universit´ede Montpellier, Montpellier, F-France. E-mail: [email protected] Abstract. We introduce a temporal scheme for data sampling, based on a variable delay between two successive data acquisitions. The scheme is designed so as to reduce the average data flow rate, while still retaining the information on the data evolution on fast time scales. The practical implementation of the scheme is discussed and demonstrated in light scattering and microscopy experiments that probe the dynamics of colloidal suspensions using CMOS or CCD cameras as detectors. arXiv:1511.07756v1 [cond-mat.soft] 24 Nov 2015 1. Introduction Since the birth of modern science in the sixteenth century, measuring, quantifying and modelling how a system evolves in time has been one of the key challenges for physicists. For condensed matter systems comprising many particles, the time evolution is quantified by comparing system configurations at different times, or by studying the temporal fluctuations of a physical quantity directly related to the particle configuration. An example of the first approach is the particle mean squared displacement, which quantifies the average change of particle positions, as determined, e.g., in optical or confocal microscopy experiments with colloidal particles [1, 2, 3]. The second method is exemplified by dynamic light scattering (DLS) [4], which relates the temporal fluctuations of laser light scattered by the sample to its microscopic dynamics. -
Evanescent Wave Dynamic Light Scattering of Turbid Media
Evanescent Wave Dynamic Light Scattering of Turbid Media Antonio Giuliani*, Benoit Loppinet@ Institute for Electronic Structure and Laser, Foundation for Research and Technology Hellas, Heraklion Greece *Present address : University of Groningen, the Netherlands @ [email protected] Abstract Dynamics light scattering (DLS) is a widely used techniques to characterize dynamics in soft phases. Evanescent Wave DLS refers to the case of total internal reflection DLS that probes near interface dynamics. We here investigate the use of EWDLS for turbid sample. Using combination of ray-tracing simulation and experiments, we show that a significant fraction of the detected photons are scattered once and has phase shifts distinct from the multiple scattering fraction. It follows that the measured correlation can be separated into two contributions: a single scattering one arising from the evanescent wave scattering, providing information on motion of the "scatterers" and the associated near wall dynamics and a multiple scattering contribution originating from scattering within the bulk of the sample. In case of turbid enough samples, the latter provides diffusive wave spectroscopy (DWS) -like correlation contribution. The validity of the approach is validated using turbid colloidal dispersion at rest and under shear. At rest we used depolarized scattering to distinguish both contributions. Under shear, the two contributions can easily be distinguished as the near wall dynamics and the bulk one are well separated. Information of both the near wall flow and the bulk flow can be retrieved from a single experiment. The simple structure of the measured correlation is opening the use of EWDLS for a large range of samples. -
Using Serial Dilution to Understand Ppm/Ppb
Using Serial Dilution to Understand ppm/ppb Adapted from Investigating Groundwater: The Fruitvale Story, Science Education for Public Understanding Program (SEPUP), Lawrence Hall of Science (1996) by Dana Haine, UNC Superfund Research Program. Overview: Students will perform a serial dilution of food coloring to create highly diluted solutions to learn about the units, parts per million (ppm) and parts per billion (ppb), that scientists often use to describe chemical contamination of water or soil. Objectives: At the end of this activity, students will be able to: • Define serial dilution; • Define ppm and ppb; • Observe that a contaminant can be present in water even if it isn’t visible. Alignment to North Carolina Essential Standards for Science This lesson addresses components of the specific learning objectives: 8th Grade Science 8.E.1.3 Predict the safety and potability of water supplies in North Carolina based on physical and biological factors, including temperature, dissolved oxygen, pH, nitrates and phosphates, turbidity, bio-indicators 8.E.1.4 Conclude that the good health of humans requires: monitoring of the hydrosphere, water quality standards, methods of water treatment, maintaining safe water quality, stewardship Earth and Environmental Science EEn.2.4.1 Evaluate human influences on freshwater availability. EEn.2.4.2 Evaluate human influences on water quality in North Carolina’s river basins, wetlands and tidal environments. Physical Science PSc.2.1.2 Explain the phases of matter and the physical changes that matter undergoes. Materials: Student Data Collection Sheet, one per student Plastic tray with at least 9 wells or 9 test tubes, one tray/set of tubes per group White scrap paper to place under trays/tubes to observe results, one per group Red Food Coloring Two small cups of water, one labeled “rinse” Medicine dropper, one per group Paper towels Red colored pencils (optional) Duration 20-30 minutes Procedure: 1. -
Quantitative Structural Analysis of Polystyrene Nanoparticles Using Synchrotron X-Ray Scattering and Dynamic Light Scattering
polymers Article Quantitative Structural Analysis of Polystyrene Nanoparticles Using Synchrotron X-ray Scattering and Dynamic Light Scattering Jia Chyi Wong 1,2, Li Xiang 2, Kuan Hoon Ngoi 1,2, Chin Hua Chia 1,* , Kyeong Sik Jin 3,* and Moonhor Ree 2,* 1 Materials Science Program, School of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; [email protected] (J.C.W.); [email protected] (K.H.N.) 2 Department of Chemistry, Polymer Research Institute, and Pohang Accelerator Laboratory, Pohang University of Science and Technology, Pohang 37673, Korea; [email protected] 3 Pohang Accelerator Laboratory, Pohang University of Science & Technology, Pohang 37673, Korea * Correspondence: [email protected] (C.H.C.); [email protected] (K.S.J.); [email protected] (M.R.) Received: 1 February 2020; Accepted: 18 February 2020; Published: 19 February 2020 Abstract: A series of polystyrene nanoparticles (PS-1, PS-2, PS-3, and PS-4) in aqueous solutions were investigated in terms of morphological structure, size, and size distribution. Synchrotron small-angle X-ray scattering analysis (SAXS) was carried out, providing morphology details, size and size distribution on the particles. PS-1, PS-2, and PS-3 were confirmed to behave two-phase (core and shell) spherical shapes, whereas PS-4 exhibited a single-phase spherical shape. They all revealed very narrow unimodal size distributions. The structural parameter details including radial density profile were determined. In addition, the presence of surfactant molecules and their assemblies were detected for all particle solutions, which could originate from their surfactant-assisted emulsion polymerizations. -
Laboratory Exercises in Microbiology: Discovering the Unseen World Through Hands-On Investigation
City University of New York (CUNY) CUNY Academic Works Open Educational Resources Queensborough Community College 2016 Laboratory Exercises in Microbiology: Discovering the Unseen World Through Hands-On Investigation Joan Petersen CUNY Queensborough Community College Susan McLaughlin CUNY Queensborough Community College How does access to this work benefit ou?y Let us know! More information about this work at: https://academicworks.cuny.edu/qb_oers/16 Discover additional works at: https://academicworks.cuny.edu This work is made publicly available by the City University of New York (CUNY). Contact: [email protected] Laboratory Exercises in Microbiology: Discovering the Unseen World through Hands-On Investigation By Dr. Susan McLaughlin & Dr. Joan Petersen Queensborough Community College Laboratory Exercises in Microbiology: Discovering the Unseen World through Hands-On Investigation Table of Contents Preface………………………………………………………………………………………i Acknowledgments…………………………………………………………………………..ii Microbiology Lab Safety Instructions…………………………………………………...... iii Lab 1. Introduction to Microscopy and Diversity of Cell Types……………………......... 1 Lab 2. Introduction to Aseptic Techniques and Growth Media………………………...... 19 Lab 3. Preparation of Bacterial Smears and Introduction to Staining…………………...... 37 Lab 4. Acid fast and Endospore Staining……………………………………………......... 49 Lab 5. Metabolic Activities of Bacteria…………………………………………….…....... 59 Lab 6. Dichotomous Keys……………………………………………………………......... 77 Lab 7. The Effect of Physical Factors on Microbial Growth……………………………... 85 Lab 8. Chemical Control of Microbial Growth—Disinfectants and Antibiotics…………. 99 Lab 9. The Microbiology of Milk and Food………………………………………………. 111 Lab 10. The Eukaryotes………………………………………………………………........ 123 Lab 11. Clinical Microbiology I; Anaerobic pathogens; Vectors of Infectious Disease….. 141 Lab 12. Clinical Microbiology II—Immunology and the Biolog System………………… 153 Lab 13. Putting it all Together: Case Studies in Microbiology…………………………… 163 Appendix I. -
Determination of the Solubility Product of an Ionic Compound
Determination of the Solubility Product of an Ionic Compound Kyle Miller January 11, 2007 1 Data The following data were collected. Dilution Precipitation well Ca2+ #6 OH− #4 2 Calculations 2.1 Calcium Ion Serial Dilution The first well without a precipitate is well number 6. The concentration of calcium ions per well is 0.10 [Ca2+] = M (1) 2n where n is the well number. So, the concentration of calcium ions in well number 6 is 0.10 −3 26 M = 1.6 × 10 M For each of the wells in this series, the concentration of added NaOH was a constant 0.1 M 2 = 0.05 M after being added to each well. 2+ − The Ksp for this ion equilibrium, Ca(OH)2 Ca + 2OH , is 2+ −2 Ksp = Ca OH (2) So, putting in the concentrations for well number 6, which is assumed to have complete −3 2 −6 dissociation of the calcium hydroxide, Ksp = 1.6 × 10 [0.05] = 3.9 × 10 1 2.2 Hydroxide Ion Serial Dilution The first well without precipitate for this series is well number 4. The concentration of hydroxide ions per well is 0.10 [OH−] = M (3) 2n again, with n being the well number. So, the concentration of hydroxide ions in well 0.10 −3 number 4 is 24 M = 6.3 × 10 M For each of the wells in this series, the concentration of added calcium nitrate was a constant 0.1 M 2 = 0.05 M after being added to each well. Using the ion equilibrium equation and these concentrations, we can find that Ksp = [0.05] 6.3 × 10−32 = 2.0 × 10−6 ¯ 3.9×10−6+2.0×10−6 −6 Then, Ksp = 2 = 3.0 × 10 −6 The actual Ksp is 5.02×10 and the percent error from this value to the calculated average |3.0×10−6−5.02×10−6| is 5.02×10−6 = 40.% 3 Discussion 1. -
Experiment 16
FV 2/10/2017 Experiment 16 HYDRONIUM ION CONCENTRATION MATERIALS: 7 centrifuge tubes with 10 mL mark, six 25 x 150 mm large test tubes, 5 mL pipet, 50 mL beaker, 50 mL graduated cylinder, 1.0 M HCl, 1.0 M CH3COOH, CH3COONa, methyl violet and methyl orange indicator solutions, test tube rack, calibrated pH meter (instructor use only). PURPOSE: The purpose of this experiment is to perform serial dilutions and use indicators to estimate the pH of various solutions. LEARNING OBJECTIVES: By the end of this experiment, the students should be able to demonstrate the following proficiencies: 1. Prepare solutions by serial dilution. + 2. Correlate the H3O ion concentration of a solution with its pH value. 3. Use indicators to estimate the pH of solutions of various acid concentrations. 4. Explain the common ion effect. 5. Calculate percent dissociation of a weak acid. PRE-LAB: Read over the experiment and complete the pre-lab questions on OWL before the lab. DISCUSSION: In any aqueous solution, the product of the hydronium ion concentration and the hydroxide ion concentration is equal to a constant, known as Kw. At a temperature of 25°C, this product is: + - -14 Kw = [H3O ]⋅ [OH ] = 1.0 x 10 (25° C) + - If the [H3O ] concentration is altered, the [OH ] concentration changes so that the product of the two terms remains 1.0 x 10-14. In pure, distilled water at 25°C: + - -7 [H3O ] = [OH ] = 1.0 x 10 M (25° C) To describe acidity in a simple way, the pH scale was adopted: + pH = -log[H3O ] Thus, for pure, distilled water at 25°C: -7 = ° pH = -log(1.0 x 10 ) 7.00 (25 C) + The practical range of pH in aqueous solutions at 25°C is from 0 to 14. -
Robust Estimation of Bacterial Cell Count from Optical Density
bioRxiv preprint first posted online Oct. 13, 2019; doi: http://dx.doi.org/10.1101/803239. The copyright holder for this preprint (which was not peer-reviewed) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. Robust Estimation of Bacterial Cell Count from Optical Density Jacob Beal1*, Natalie G. Farny2*, Traci Haddock-Angelli3*, Vinoo Selvarajah3, Geoff S. Baldwin4*, Russell Buckley-Taylor4, Markus Gershater5*, Daisuke Kiga6, John Marken7, Vishal Sanchania5, Abigail Sison3, Christopher T. Workman8*, and the iGEM Interlab Study Contributors 1 Raytheon BBN Technologies, Cambridge, MA, USA 2 Department of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA, USA 3 iGEM Foundation, Cambridge, MA, USA 4 Department of Life Sciences and IC-Centre for Synthetic Biology, Imperial College London, London, UK 5 Synthace, London, UK 6 Faculty of Science and Engineering, School of Advanced Science and Engineering, Waseda University, Tokyo, Japan 7 Department of Bioengineering, California Institute of Technology, Pasadena, CA, USA 8 DTU-Bioengineering, Technical University of Denmark, Kongens Lyngby, Denmark Membership list is provided in Supplementary Note: iGEM Interlab Study Contributors. * [email protected] (J.B.), [email protected] (N.G.F.), [email protected] (T.H-A.), [email protected] (G.S.B.), [email protected] (M.G.), [email protected] (C.T.W.) Abstract Optical density (OD) is a fast, cheap, and high-throughput measurement widely used to estimate the density of cells in liquid culture. These measurements, however, cannot be compared between instruments without a standardized calibration protocol and are challenging to relate to actual cell count. -
Pecora R (2000) DLS Measurements of Nm Particles in Liquids
Journal of Nanoparticle Research 2: 123–131, 2000. © 2000 Kluwer Academic Publishers. Printed in the Netherlands. Invited paper Dynamic light scattering measurement of nanometer particles in liquids R. Pecora Department of Chemistry, Stanford University, Stanford, CA 94305-5080, USA (E-mail: [email protected]) Received 15 January 2000; accepted in revised form 14 June 2000 Key words: nanoparticle, characterization, light scattering, PCS, interferometry, diffusion, polydispersivity Abstract Dynamic light scattering (DLS) techniques for studying sizes and shapes of nanoparticles in liquids are reviewed. In photon correlation spectroscopy (PCS), the time fluctuations in the intensity of light scattered by the particle dispersion are monitored. For dilute dispersions of spherical nanoparticles, the decay rate of the time autocorrelation function of these intensity fluctuations is used to directly measure the particle translational diffusion coefficient, which is in turn related to the particle hydrodynamic radius. For a spherical particle, the hydrodynamic radius is essentially the same as the geometric particle radius (including any possible solvation layers). PCS is one of the most commonly used methods for measuring radii of submicron size particles in liquid dispersions. Depolarized Fabry-Perot interferometry (FPI) is a less common dynamic light scattering technique that is applicable to opti- cally anisotropic nanoparticles. In FPI the frequency broadening of laser light scattered by the particles is analyzed. This broadening is proportional to the particle rotational diffusion coefficient, which is in turn related to the par- ticle dimensions. The translational diffusion coefficient measured by PCS and the rotational diffusion coefficient measured by depolarized FPI may be combined to obtain the dimensions of non-spherical particles. -
Standard Methods for the Examination of Water and Wastewater
Standard Methods for the Examination of Water and Wastewater Part 1000 INTRODUCTION 1010 INTRODUCTION 1010 A. Scope and Application of Methods The procedures described in these standards are intended for the examination of waters of a wide range of quality, including water suitable for domestic or industrial supplies, surface water, ground water, cooling or circulating water, boiler water, boiler feed water, treated and untreated municipal or industrial wastewater, and saline water. The unity of the fields of water supply, receiving water quality, and wastewater treatment and disposal is recognized by presenting methods of analysis for each constituent in a single section for all types of waters. An effort has been made to present methods that apply generally. Where alternative methods are necessary for samples of different composition, the basis for selecting the most appropriate method is presented as clearly as possible. However, samples with extreme concentrations or otherwise unusual compositions or characteristics may present difficulties that preclude the direct use of these methods. Hence, some modification of a procedure may be necessary in specific instances. Whenever a procedure is modified, the analyst should state plainly the nature of modification in the report of results. Certain procedures are intended for use with sludges and sediments. Here again, the effort has been to present methods of the widest possible application, but when chemical sludges or slurries or other samples of highly unusual composition are encountered, the methods of this manual may require modification or may be inappropriate. Most of the methods included here have been endorsed by regulatory agencies. Procedural modification without formal approval may be unacceptable to a regulatory body. -
Introduction to Dynamic Light Scattering for Particle Size Determination
www.horiba.com/us/particle Jeffrey Bodycomb, Ph.D. Introduction to Dynamic Light Scattering for Particle Size Determination © 2016 HORIBA, Ltd. All rights reserved. 1 Sizing Techniques 0.001 0.01 0.1 1 10 100 1000 Nano-Metric Fine Coarse SizeSize Colloidal Macromolecules Powders AppsApps Suspensions and Slurries Electron Microscope Acoustic Spectroscopy Sieves Light Obscuration Laser Diffraction – LA-960 Electrozone Sensing Methods DLS – SZ-100 Sedimentation Disc-Centrifuge Image Analysis PSA300, Camsizer © 2016 HORIBA, Ltd. All rights reserved. 3 Two Approaches to Image Analysis Dynamic: Static: particles flow past camera particles fixed on slide, stage moves slide 0.5 – 1000 um 1 – 3000 um 2000 um w/1.25 objective © 2016 HORIBA, Ltd. All rights reserved. 4 Laser Diffraction Laser Diffraction •Particle size 0.01 – 3000 µm •Converts scattered light to particle size distribution •Quick, repeatable •Most common technique •Suspensions & powders © 2016 HORIBA, Ltd. All rights reserved. 5 Laser Diffraction Suspension Powders Silica ~ 30 nm Coffee Results 0.3 – 1 mm 14 100 90 12 80 10 70 60 8 50 q(%) 6 40 4 30 20 2 10 0 0 10.00 100.0 1000 3000 Diameter(µm) © 2016 HORIBA, Ltd. All rights reserved. 6 What is Dynamic Light Scattering? • Dynamic light scattering refers to measurement and interpretation of light scattering data on a microsecond time scale. • Dynamic light scattering can be used to determine – Particle/molecular size – Size distribution – Relaxations in complex fluids © 2016 HORIBA, Ltd. All rights reserved. 7 Other Light Scattering Techniques • Static Light Scattering: over a duration of ~1 second. Used for determining particle size (diameters greater than 10 nm), polymer molecular weight, 2nd virial coefficient, Rg. -
"Characterization of Protein Oligomers by Multi-Angle Light Scattering" In
and additional structural information. Studying protein Characterization of Protein oligomerization using Light scattering (LS) methods is Oligomers by Multi-angle Light combined in many cases with chromatographic methods, resulting in accurate characterization of this dynamic Scattering process with minimal measurement-related interferences. Here, we describe several light scattering-based techniques combined with several separation methods, focusing on Mai Shamir, Hadar Amartely, Mario Lebendiker, the more common method of size exclusion chromatog- Assaf Friedler raphy – multi-angle light scattering (SEC-MALS) and two The Hebrew University of Jerusalem, Jerusalem, additional and in some cases complementary methods, Israel ion exchange chromatography and flow field fractionation combined with MALS. 1 Introduction 1 2 Methods for Studying Protein 1 INTRODUCTION Oligomerization 2 3 Light Scattering of Macromolecules 3 Protein oligomerization is a fundamental process in cell biology, where two or more polypeptide chains are 4 Static Light Scattering 3 interacting, usually in a noncovalent way, to form the 4.1 The Dependence of the Static Light active form of the protein. Proteins can form homo or Scattering Intensity on the Protein Molar hetero-oligomers. Over 35% of the proteins in the cell Mass and Concentration 4 are oligomers and over half of them are homodimers or 4.2 The Dependence of Static Light Scattering homotetramers (Figure 1).(1,2) Protein oligomerization Intensity on the Protein Size 4 is at the basis of a large variety of cellular processes(3): 5 Dynamic Light Scattering 5 Oligomers provide diversity and specificity of many 6 Light Scattering Intensity in Oligomerization pathways by regulation or activation, including gene Process 7 expression, activity of enzymes, ion channels, receptors, (4–7) 7 Chromatographic Separation Coupled with and cell–cell adhesion processes.