Robust Determination of the Chemical Potential in the Pole
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Quantum Chemical Calculations of NMR Parameters
Quantum Chemical Calculations of NMR Parameters Tatyana Polenova University of Delaware Newark, DE Winter School on Biomolecular NMR January 20-25, 2008 Stowe, Vermont OUTLINE INTRODUCTION Relating NMR parameters to geometric and electronic structure Classical calculations of EFG tensors Molecular properties from quantum chemical calculations Quantum chemistry methods DENSITY FUNCTIONAL THEORY FOR CALCULATIONS OF NMR PARAMETERS Introduction to DFT Software Practical examples Tutorial RELATING NMR OBSERVABLES TO MOLECULAR STRUCTURE NMR Spectrum NMR Parameters Local geometry Chemical structure (reactivity) I. Calculation of experimental NMR parameters Find unique solution to CQ, Q, , , , , II. Theoretical prediction of fine structure constants from molecular geometry Classical electrostatic model (EFG)- only in simple ionic compounds Quantum mechanical calculations (Density Functional Theory) (EFG, CSA) ELECTRIC FIELD GRADIENT (EFG) TENSOR: POINT CHARGE MODEL EFG TENSOR IS DETERMINED BY THE COMBINED ELECTRONIC AND NUCLEAR WAVEFUNCTION, NO ANALYTICAL EXPRESSION IN THE GENERAL CASE THE SIMPLEST APPROXIMATION: CLASSICAL POINT CHARGE MODEL n Zie 4 V2,k = 3 Y2,k ()i,i i=1 di 5 ATOMS CONTRIBUTING TO THE EFG TENSOR ARE TREATED AS POINT CHARGES, THE RESULTING EFG TENSOR IS THE SUM WITH RESPECT TO ALL ATOMS VERY CRUDE MODEL, WORKS QUANTITATIVELY ONLY IN SIMPLEST IONIC SYSTEMS, BUT YIELDS QUALITATIVE TRENDS AND GENERAL UNDERSTANDING OF THE SYMMETRY AND MAGNITUDE OF THE EXPECTED TENSOR ELECTRIC FIELD GRADIENT (EFG) TENSOR: POINT CHARGE MODEL n Zie 4 V2,k = 3 Y2,k ()i,i i=1 di 5 Ze V = ; V = 0; V = 0 2,0 d 3 2,±1 2,±2 2Ze V = ; V = 0; V = 0 2,0 d 3 2,±1 2,±2 3 Ze V = ; V = 0; V = 0 2,0 2 d 3 2,±1 2,±2 V2,0 = 0; V2,±1 = 0; V2,±2 = 0 MOLECULAR PROPERTIES FROM QUANTUM CHEMICAL CALCULATIONS H = E See for example M. -
Virt&L-Comm.3.2012.1
Virt&l-Comm.3.2012.1 A MODERN APPROACH TO AB INITIO COMPUTING IN CHEMISTRY, MOLECULAR AND MATERIALS SCIENCE AND TECHNOLOGIES ANTONIO LAGANA’, DEPARTMENT OF CHEMISTRY, UNIVERSITY OF PERUGIA, PERUGIA (IT)* ABSTRACT In this document we examine the present situation of Ab initio computing in Chemistry and Molecular and Materials Science and Technologies applications. To this end we give a short survey of the most popular quantum chemistry and quantum (as well as classical and semiclassical) molecular dynamics programs and packages. We then examine the need to move to higher complexity multiscale computational applications and the related need to adopt for them on the platform side cloud and grid computing. On this ground we examine also the need for reorganizing. The design of a possible roadmap to establishing a Chemistry Virtual Research Community is then sketched and some examples of Chemistry and Molecular and Materials Science and Technologies prototype applications exploiting the synergy between competences and distributed platforms are illustrated for these applications the middleware and work habits into cooperative schemes and virtual research communities (part of the first draft of this paper has been incorporated in the white paper issued by the Computational Chemistry Division of EUCHEMS in August 2012) INTRODUCTION The computational chemistry (CC) community is made of individuals (academics, affiliated to research institutions and operators of chemistry related companies) carrying out computational research in Chemistry, Molecular and Materials Science and Technology (CMMST). It is to a large extent registered into the CC division (DCC) of the European Chemistry and Molecular Science (EUCHEMS) Society and is connected to other chemistry related organizations operating in Chemical Engineering, Biochemistry, Chemometrics, Omics-sciences, Medicinal chemistry, Forensic chemistry, Food chemistry, etc. -
Author's Personal Copy
Author's personal copy Computer Physics Communications 183 (2012) 2272–2281 Contents lists available at SciVerse ScienceDirect Computer Physics Communications journal homepage: www.elsevier.com/locate/cpc Libxc: A library of exchange and correlation functionals for density functional theory✩ Miguel A.L. Marques a,b,∗, Micael J.T. Oliveira c, Tobias Burnus d a Université de Lyon, F-69000 Lyon, France b LPMCN, CNRS, UMR 5586, Université Lyon 1, F-69622 Villeurbanne, France c Center for Computational Physics, University of Coimbra, Rua Larga, 3004-516 Coimbra, Portugal d Peter Grünberg Institut and Institute for Advanced Simulation, Forschungszentrum Jülich, and Jülich Aachen Research Alliance, 52425 Jülich, Germany a r t i c l e i n f o a b s t r a c t Article history: The central quantity of density functional theory is the so-called exchange–correlation functional. This Received 8 March 2012 quantity encompasses all non-trivial many-body effects of the ground-state and has to be approximated Received in revised form in any practical application of the theory. For the past 50 years, hundreds of such approximations have 7 May 2012 appeared, with many successfully persisting in the electronic structure community and literature. Here, Accepted 8 May 2012 we present a library that contains routines to evaluate many of these functionals (around 180) and their Available online 19 May 2012 derivatives. Keywords: Program summary Density functional theory Program title: LIBXC Density functionals Catalogue identifier: AEMU_v1_0 Local density approximation Generalized gradient approximation Program summary URL: http://cpc.cs.qub.ac.uk/summaries/AEMU_v1_0.html Hybrid functionals Program obtainable from: CPC Program Library, Queen’s University, Belfast, N. -
Transport Phenomena in Nanomechanical Systems for Molecular Manufacturing
Transport Phenomena in Nanomechanical Systems for Molecular Manufacturing Presented In Honor of Professor Julian Szekely David R. Forrest, ScD, PE 2006 TMS Fall Extraction & Processing Meeting: Sohn International Symposium San Diego, CA 27 - 31 August 2006 I'd like to acknowledge the three organizations that sponsor and support me: the Naval Surface Warfare Center in Bethesda, Maryland, where I work, the Institute for Molecular Manufacturing (a non-profit in California, of which I'm President), and the Foresight Nanotech Institute, where I'm a Senior Fellow. Page 1 Before I dig into the technical content, I'd like to say a few words about the motivation for the topic that I chose to speak about this afternoon. Julian Szekely's legendary work--applying the mathematical analysis of continuum transport phenomena to materials processing systems--has certainly been an inspiration to me in my career, and I'm proud to have played a small part in that effort while I was in his lab at MIT from 1985 to 1991. I know that he was frustrated with me from time to time because I would lose focus on my research to organize talks and seminars on molecular nanotechnology, but he never discouraged me from that pursuit. And now, 20 years later, groups are building molecular machines, ushering us into a new age of manufacturing technology. When I heard that there would be a Szekely reunion session at this conference, I couldn't resist the chance to honor Julian Szekely's legacy with a talk on transport phenomena in nanosystems. Page 2 Presentation on-line http://davidrforrest.com/szekely I'll be flipping quickly through these slides, but don't worry if you miss something. -
S.A. Raja Pharmacy College Vadakkangulam-627 116
S.A. RAJA PHARMACY COLLEGE VADAKKANGULAM-627 116 MEDICINAL CHEMISTRY -III VI SEMESTER B. PHARM PRACTICAL MANUAL CONTENT S.No Experiment Name Page No. 1. Synthesis of Sulphanilamide 01 2. Synthesis of 7- Hydroxy -4- methyl coumarin 03 3. Synthesis of Chlorbutanol 05 4. Synthesis of Tolbutamide 07 5. Synthesis of Hexamine 09 6. Assay of Isonicotinic acid hydrazide 11 7. Assay of Metronidazole 13 8. Assay of Dapsone 16 9. Assay of Chlorpheniramine Maleate 18 10. Assay of Benzyl Penicillin 20 11. Synthesis of Phenytoin from Benzil by Microwave 23 Irradiation 12. Synthesis of Aspirin Assisted by Microwave Oven 26 13. Drawing structure and Reaction using Chemsketch 28 MEDICINAL CHEMISTRY- III Experiment No: 01 Synthesis of Sulphanilamide Aim: To synthesis and submit sulphanilamide from p-acetamido benzene sulphanilamide and calculate its percentage yield. Principle: Sulphanilamide can be prepared by the reaction of P-acetamido benzene sulphanilamide with Hydrochloric acid or ammonium carbonate. The acetamido groups are easily undergo acid catalysed hydrolysis reaction to form p-amino benzene sulphonamide. Reaction: O HN H2N HCl O S O O S O NH NH2 2 4 Acetamidobenzene sulphonamide p Amino benzene sulphonamide Chemical Required: Resorcinol - 1.2 g Ethyl acetoacetate - 2.4 ml Conc. Sulphuric acid - 7.5 ml Procedure: 1.5 gm of 4- acetamido benzene sulphonamide is treated with a mixture of 1 ml of conc. Sulphuric acid diluted with 2 ml water. This mixture is gently heated under reflux for 1 hour. Then 3ml of water is added and the solution is boiled again, with the addition of a small quantity of activated charcoal. -
Isurvey - Online Questionnaire Generation from the University of Southampton
1/17/2018 iSurvey - Online Questionnaire Generation from the University of Southampton Investigating the use of software for Chemists Survey Study Information Study title: Investigating the use of software for Chemists Survey Researcher name: Samantha Kanza Study reference: iSurvey 16857 Ethics reference: Ergo 17642 – Chemistry Tools Survey Participant Information Please read this information carefully before deciding to take part in this research. If you are happy to participate you will be asked to check the consent form box. What is the research about? This research is for my PhD in Computer Science and Chemistry. I am coming to the end of the first year of my PhD and I am looking to investigate the use of chemistry tools to better understand what type of tools chemists actually use. This is a very simple survey that asks what type of chemist you are, and what types of tools you use, and if applicable which specific tools of that type you use. This PhD is part of the Web Science CDT and is funded by EPSRC. Why have I been chosen? You have been chosen because you work in chemistry. What will happen to me if I take part? This is a short survey that is being conducted to get a better idea of the usage of chemistry tools. Are there any benefits in my taking part? This survey will form part of a body of research aimed to improve the understanding of how chemists use technology to assist their work. Are there any risks involved? There are no risks involved. Will my participation be confidential? Your participation will be confidential. -
Abinit Gui Download
Abinit gui download Downloads. Click on the following link to download the latest release version of AbinitGUI (a). Binary files: just untar the file and launch. AbinitGUI is a Graphical User Interface (GUI) designed to help Abinit users in pre-processing, You can download the package on the Download web page. If you want to download the stable release of AbinitGUI or have more information about AbinitGUI, please have a look to the AbinitGUI website. Main menu. Home · Downloads · Screenshots · Features · Development · MAPR - students · Tutorial 1 with GUI. You are here. Home. User account. Primary. GUI for Abinit package (). Contribute to abinitgui development by creating Python %; Other %. Java Python Other. Clone or download. abipy - Open-source library for analyzing the results produced by ABINIT. Clone or download . Use conda install wxpython The directory contains demos that can be used to test the installation. of the GUI (run the script. AbinitGUI download link (): (MB). Pseudopotential filetree download link (organized for AbinitGUI): (MB). PyMatGen. he tutorial is made on Windows 7 but could easily be transposed to Windows XP or Windows 8. The rest of this guide will focus on the nanoHUB interface for ABINIT. For more An ABINIT input deck is generated from the options chosen in the GUI. The ABINIT tool is used to find the total energy, charge density and electronic Is it allowed to download abinit output files in my storage? Is it allowed to download abinit output files in my storage? Hi,I am a new user of nanohub's GUI of ABINIT, but I found it unable to repeat the. -
Key Concepts in Density Functional Theory from the Many Body Problem to the Kohn-Sham Scheme
The many-body problem From Hartree to Thomas Fermi DFT HK theorems KS scheme and bands Summary Key concepts in Density Functional Theory From the many body problem to the Kohn-Sham scheme Silvana Botti ILM (LPMCN) CNRS, Universit´eLyon 1 - France European Theoretical Spectroscopy Facility (ETSF) December 12, 2012 { Lyon Key concepts in Density Functional Theory Silvana Botti The many-body problem From Hartree to Thomas Fermi DFT HK theorems KS scheme and bands Summary Outline 1 The many-body problem 2 Earlier solutions: Hartree, Hartree-Fock, Thomas-Fermi 3 The solution: density functional theory 4 Hohenberg-Kohn theorems 5 Practical implementations: the Kohn-Sham scheme 6 Summary Key concepts in Density Functional Theory Silvana Botti The many-body problem From Hartree to Thomas Fermi DFT HK theorems KS scheme and bands Summary Outline 1 The many-body problem 2 Earlier solutions: Hartree, Hartree-Fock, Thomas-Fermi 3 The solution: density functional theory 4 Hohenberg-Kohn theorems 5 Practical implementations: the Kohn-Sham scheme 6 Summary Key concepts in Density Functional Theory Silvana Botti The many-body problem From Hartree to Thomas Fermi DFT HK theorems KS scheme and bands Summary The many-body problem Schr¨odingerequation for a quantum system of N interacting particles: How to deal with N ≈ 1023 particles? H^ Ψ(fRg ; frg) = EΨ(fRg ; frg) ^ ^ ^ Ne electrons H = Tn (fRg) + Vnn (fRg) + Nn nuclei T^e (frg) + V^ee (frg) + U^en (fRg ; frg) Key concepts in Density Functional Theory Silvana Botti The many-body problem From Hartree to -
Density Functional Theory - Wikipedia, the Free Encyclopedia 10/17/2006 10:37 AM
Density functional theory - Wikipedia, the free encyclopedia 10/17/2006 10:37 AM Density functional theory From Wikipedia, the free encyclopedia Density functional theory (DFT) is a quantum mechanical method used in physics and chemistry to investigate the electronic structure of many-body systems, in particular molecules and the condensed phases. DFT is among the most popular and versatile methods available in condensed matter physics (computational physics) and computational chemistry. Contents 1 Description of the theory 2 The Thomas-Fermi model 3 Derivation and formalism 4 Approximations 5 Generalizations to include magnetic fields 6 Applications 7 Software supporting DFT 8 Books on DFT 9 References 10 External links Description of the theory Traditional methods in electronic structure theory, in particular Hartree-Fock theory and its descendants, are based on the complicated many-electron wavefunction. The main objective of density functional theory is to replace the many- body electronic wavefunction with the electronic density as the basic quantity. Whereas the many-body wavefunction is dependent on 3N variables, three spatial variables for each of the N electrons, the density is only a function of three variables and is a simpler quantity to deal with both conceptually and practically. Although density functional theory has its conceptual roots in the Thomas-Fermi model, DFT was not put on a firm theoretical footing until the Hohenberg-Kohn theorems (HK). The first of these demonstrates the existence of a one- to-one mapping between the ground state electron density and the ground state wavefunction of a many-particle system. Further, the second HK theorem proves that the ground state density minimizes the total electronic energy of the system. -
Arxiv:1203.1739V2
Libxc: a library of exchange and correlation functionals for density functional theory Miguel A. L. Marques∗ Universit´ede Lyon, F-69000 Lyon, France and LPMCN, CNRS, UMR 5586, Universit´eLyon 1, F-69622 Villeurbanne, France Micael J. T. Oliveira Center for Computational Physics, University of Coimbra, Rua Larga, 3004-516 Coimbra, Portugal Tobias Burnus Peter Gr¨unberg Institut and Institute for Advanced Simulation, Forschungszentrum J¨ulich, and J¨ulich Aachen Research Alliance, 52425 J¨ulich, Germany The central quantity of density functional theory is the so-called exchange-correlation functional. This quantity encompasses all non-trivial many-body effects of the ground-state and has to be ap- proximated in any practical application of the theory. For the past 50 years, hundreds of such approximations have appeared, with many successfully persisting in the electronic structure com- munity and literature. Here, we present a library that contains routines to evaluate many of these functionals (around 180) and their derivatives. I. INTRODUCTION Density functional theory (DFT) is perhaps one of the most successful theories in Physics and in Chemistry of the last half-century [1–4]. It is currently used to predict the structure and the properties of atoms, molecules, and solids; it is a key ingredient of the new field of Materials Design, where one tries to create new materials with specific properties; it is making its way in Biology as an important tool in the investigation of proteins, DNA, etc. These are only a few examples of a discipline that even now, almost 50 years after its birth, is growing at an exponential rate. -
Electronic Properties of Materials for Solar Cells: Which Ab Initio Approaches Can We Trust?
Electronic properties of materials for solar cells: Which ab initio approaches can we trust? Silvana Botti 1LSI, CNRS-CEA-Ecole´ Polytechnique, Palaiseau, France 2LPMCN, CNRS-Universite´ Lyon 1, France 3European Theoretical Spectroscopy Facility September 14, 2009 – CONARES, Helsinki Silvana Botti Electronic excitations in solar cells 1 / 57 Collaborators Ecole Polytechnique Universite´ Lyon 1 Julien Vidal, Lucia Reining Fabio Trani, Miguel Marques EDF Paris CEA Saclay Par¨ Olsson, J.-F. Guillemoles Fabien Bruneval Silvana Botti Electronic excitations in solar cells 2 / 57 European Theoretical Spectroscopy Facility (ETSF) The ETSF is a knowledge center for theoretical spectroscopy carrying out state-of-the-art research on theoretical and computational methods for studying electronic and optical properties of materials. The ETSF gathers the experience and know-how of more than 200 researchers in Europe and the United States. The ETSF offers its expertise to researchers, industry, and students in the form of collaborative projects, free scientific software and training. Proposals can be submitted at any moment! Further information: www.etsf.eu Silvana Botti Electronic excitations in solar cells 3 / 57 Outline 1 Thin-film photovoltaic materials 2 What can we calculate within standard DFT? 3 How to go beyond standard DFT? GW approaches! 4 How to compare with experiments? Silvana Botti Electronic excitations in solar cells 4 / 57 Thin-film photovoltaic materials Outline 1 Thin-film photovoltaic materials 2 What can we calculate within standard -
Workshop Reports 2015
Workshop Reports 2015 Table of Contents Introduction ........................................................................................................... 4 Charge Transfer Modelling in Chemistry: new methods and solutions for a long- standing problem.................................................................................................... 5 Emergent structural and electronic phenomena at interfaces of nanoscale oxides.... 7 Computational many-body physics in the era of artificial gauge fields .................... 10 Perspectives of many-particle methods: total energy, spectroscopy and time- dependent dynamics............................................................................................. 12 Stochastic Wavefunction Methods in Quantum Chemistry, Electronic Structure Theory and Condensed Matter Physics .................................................................. 15 Green's function methods: the next generation II .................................................. 18 Molecular hydrodynamics meets fluctuating hydrodynamics ................................. 21 From Many-Body Hamiltonians to Machine Learning and Back .............................. 24 Simulation of systems under thermodynamic —like gradients................................... 26 Collective dynamics in physics, biology and social sciences .................................... 28 Electron-vibration coupling: theoretical and numerical challenges ......................... 30 JUJOLS VIII: An European workshop on theoretical approaches of molecular