microorganisms Article Genome-Wide Analysis of Nutrient Signaling Pathways Conserved in Arbuscular Mycorrhizal Fungi Xiaoqin Zhou 1 , Jiangyong Li 2 , Nianwu Tang 3 , Hongyun Xie 1 , Xiaoning Fan 1 , Hui Chen 1 , Ming Tang 1,* and Xianan Xie 1,* 1 State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources, Lingnan Guangdong Laboratory of Modern Agriculture, Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China;
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[email protected] (X.X.); Tel.: +86-137-0922-9152 (M.T.); +86-159-1855-2425 (X.X.) Abstract: Arbuscular mycorrhizal (AM) fungi form a mutualistic symbiosis with a majority of terrestrial vascular plants. To achieve an efficient nutrient trade with their hosts, AM fungi sense external and internal nutrients, and integrate different hierarchic regulations to optimize nutrient acquisition and homeostasis during mycorrhization. However, the underlying molecular networks in AM fungi orchestrating the nutrient sensing and signaling remain elusive. Based on homology search, we here found that at least 72 gene components involved in four nutrient sensing and signaling Citation: Zhou, X.; Li, J.; Tang, N.; pathways, including cAMP-dependent protein kinase A (cAMP-PKA), sucrose non-fermenting 1 Xie, H.; Fan, X.; Chen, H.; Tang, M.; (SNF1) protein kinase, target of rapamycin kinase (TOR) and phosphate (PHO) signaling cascades, are Xie, X.