The UV Environment for Prebiotic Chemistry: Connecting Origin-Of-Life Scenarios to Planetary Environments

Total Page:16

File Type:pdf, Size:1020Kb

The UV Environment for Prebiotic Chemistry: Connecting Origin-Of-Life Scenarios to Planetary Environments The UV Environment for Prebiotic Chemistry: Connecting Origin-of-Life Scenarios to Planetary Environments The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Ranjan, Sukrit. 2017. The UV Environment for Prebiotic Chemistry: Connecting Origin-of-Life Scenarios to Planetary Environments. Doctoral dissertation, Harvard University, Graduate School of Arts & Sciences. Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:41142052 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA The UV Environment for Prebiotic Chemistry: Connecting Origin-of-Life Scenarios to Planetary Environments A dissertation presented by Sukrit Ranjan to The Department of Astronomy in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the subject of Astronomy & Astrophysics Harvard University Cambridge, Massachusetts April 2017 c 2017 | Sukrit Ranjan All rights reserved. Dissertation Advisor: Professor Dimitar D. Sasselov Sukrit Ranjan The UV Environment for Prebiotic Chemistry: Connecting Origin-of-Life Scenarios to Planetary Environments Abstract Recent laboratory studies of prebiotic chemistry (chemistry relevant to the origin of life) are revolutionizing our understanding of the origin of life (abiogenesis) on Earth just as telescopes capable of searching for life elsewhere are coming online. This thesis sits at the intersection of these revolutions. I examine prebiotic chemical pathways postulated to be relevant to the origin of life and identify the environmental conditions they require to function. I compare these environmental requirements to what was available on Earth and other planets, and use the comparison to 1) improve studies of the origin of life on Earth and 2) explore the implications for the inhabitability of other worlds. Multiple lines of evidence suggest UV light may have played a critical role in the synthesis of molecules relevant to abiogenesis (prebiotic chemistry), such as RNA. I show that UV light interacts with prebiotic chemistry in ways that may be sensitive to the spectral shape and overall amplitude of irradiation. I use radiative transfer models to constrain the UV environment on early Earth (3.9 Ga). I find that the surface UV is insensitive to much of the considerable uncertainty in the atmospheric state, enabling me to constrain the UV environment for prebiotic chemistry on early Earth. Some authors have suggested Mars as a venue for prebiotic chemistry. Therefore, I explore plausible UV spectral fluences on Mars at 3.9 Ga. I find that the early Martian UV environment is comparable to Earth's under conventional assumptions about the iii atmosphere. However, if the atmosphere was dusty or SO2 levels were high, UV fluence would have been strongly suppressed. Intriguingly, despite overall attenuation of UV fluence, SO2 preferentially attenuates destructive FUV radiation over prebiotically-useful NUV radiation, meaning high-SO2 epochs may have been more clement for the origin of life. Better measurements of the spectral dependence of prebiotic photoprocesses are required to constrain this hypothesis. Finally, I calculate the UV fluence on planets orbiting M-dwarfs. I find that UV irradiation on such planets is low compared to Earth. Laboratory studies are required to understand whether prebiotic processes that worked on Earth can function on low-UV M-dwarf planets. In addition to UV light, the most promising pathways for the prebiotic synthesis of RNA require reduced sulfidic anions. I show that prebiotically-relevant levels of such anions derived from volcanically-outgassed SO2 should be robustly available on early Earth, and that episodes of high volcanism may be especially clement for these prebiotic pathways. However, H2S-derived anions are much less common, and prebiotic chemistry which invokes them must rely on alternate, localized sources. My work 1) provides initial conditions for laboratory studies of prebiotic chemistry, 2) constrains the inhabitability of Mars and planets orbiting M-dwarfs, and 3) demonstrates the need for laboratory studies to characterize the sensitivity of putative prebiotic chemistry to environmental conditions, e.g the spectral shape and amplitude of UV irradiation. All software associated with these studies, including models and data inputs, are publicly available for validation and extension. iv Contents Abstract iii Acknowledgments xi Dedication xiv 1 Introduction 1 1.1 Overview . .1 1.2 The Search for Life on Other Worlds . .2 1.2.1 The Search for Life Within Our Solar System . .2 1.2.2 An Abundance of Potentially Habitable Exoplanets . .5 1.2.3 Prospects for Exoplanet Biosignature Search . .6 1.2.4 Challenges For Exoplanet Biosignature Search . .7 1.2.5 Connection to Prebiotic Chemistry . 10 1.3 Prebiotic Chemistry: History and Recent Advances . 12 1.3.1 Prebiotic Chemistry: A Brief History . 12 1.3.2 Miller-Urey Syntheses . 14 1.3.3 Key Challenges Faced by Prebiotic Chemistry & The RNA World . 15 1.3.4 Recent Breakthroughs in Prebiotic Chemistry & Environmental Re- quirements . 17 1.3.5 Connection to Planetary Environment . 20 v CONTENTS 1.4 Thesis Summary . 21 2 Influence of the UV Environment on the Synthesis of Prebiotic Molecules 23 2.1 Introduction . 24 2.2 Background . 27 2.2.1 UV Light and Prebiotic Chemistry . 27 2.2.2 UV Light and the RNA World . 30 2.3 Results . 33 2.3.1 Solar UV Output in the Prebiotic Era . 34 2.3.2 Attenuation of UV Light By Aqueous Environments . 41 2.3.3 Attenuation of UV Light by the Terrestrial Atmosphere . 43 2.3.4 CO2 Shielding of Prebiotic Feedstock Gases From Photolysis . 49 2.4 Discussion . 55 2.4.1 Lessons for Laboratory Simulations . 55 2.4.2 Narrowband vs. Broadband Input . 57 2.5 Conclusions . 69 2.6 Appendix A: Constraints on the Era of Abiogenesis . 73 2.7 Appendix B: The 3.9 Ga Terrestrial Environment . 74 2.8 Appendix C: Derivation of Photolytic Constraints on Feedstock Gas Buildup 77 2− 2.9 Appendix D: Collection of Cu(CN)3 Absorption Spectrum . 79 2.10 Appendix E: Extinction Cross-Sections . 82 2.10.1 CO2 ................................... 82 2.10.2 SO2 ................................... 83 2.10.3 H2S................................... 83 3 Constraints on the Early Terrestrial Surface UV Environment Relevant to Prebiotic Chemistry 85 3.1 Introduction . 87 vi CONTENTS 3.2 Background . 89 3.2.1 Previous Work . 89 3.2.2 Constraints on the Composition of the Atmosphere at 3.9 Ga . 93 3.3 Surface UV Radiation Environment Model . 95 3.4 Model Validation . 100 3.4.1 Tests of Model Physical Consistency: The Absorption and Scatter- ing Limits . 100 3.4.2 Reproduction of Results of Rugheimer et al. (2015) . 107 3.4.3 Comparison To Modern Earth Surficial Measurements . 110 3.5 Results and Discussion . 117 3.5.1 Action Spectra and UV Dose Rates . 117 3.5.2 Impact of Albedo and Zenith Angle On Surface Radiance & Prebi- otic Chemistry . 123 3.5.3 Impact of Varying Levels of CO2 On Surface Radiance & Prebiotic Chemistry . 128 3.5.4 Alternate shielding gases . 141 3.5.5 CH4 ................................... 143 3.5.6 H2O................................... 145 3.5.7 SO2 ................................... 149 3.5.8 H2S................................... 155 3.5.9 O2 .................................... 161 3.5.10 O3 .................................... 164 3.6 Conclusions . 166 3.7 Appendix A: Extinction And Rayleigh Scattering Cross-Sections . 170 3.7.1 N2 .................................... 170 3.7.2 CO2 ................................... 171 3.7.3 H2O................................... 173 3.7.4 CH4 ................................... 175 vii CONTENTS 3.7.5 SO2 ................................... 176 3.7.6 H2S................................... 178 3.7.7 O2 .................................... 180 3.7.8 O3 .................................... 181 3.8 Appendix B: Spectral Albedos . 183 3.8.1 Ocean . 184 3.8.2 Snow . 185 3.8.3 Desert . 185 3.8.4 Tundra . 186 3.9 Appendix C: Enhancement of Upwelling Intensity in the Discrete Ordinates & Two Stream Approximations . 187 4 Atmospheric Constraints on the Surface UV Environment of Mars at 3.9 Ga Relevant to Prebiotic Chemistry 191 4.1 Introduction . 193 4.2 Background . 196 4.3 Methods . 199 4.3.1 Radiative Transfer Model . 199 4.3.2 Atmospheric Profile . 202 4.3.3 Particulate Optical Parameters . 204 4.3.4 Action Spectra and Calculation of Dose Rates . 207 4.4 Results . 212 4.4.1 Clear-Sky H2O-CO2 Atmospheres . 212 4.4.2 Effect of CO2 and H2O Clouds . 217 4.4.3 Effect of Elevated Levels of Volcanogenic Gases . 221 4.4.4 Effect of Dust . 228 4.5 Discussion . 233 4.5.1 CO2-H2O Atmosphere . 233 viii CONTENTS 4.5.2 Highly Reducing Atmospheres . 242 4.5.3 Highly-Volcanic Mars (CO2-H2O-SO2/H2S Atmosphere) . 243 4.6 Conclusion . 254 4.7 Appendix A: Sample Atmospheric Profiles . 256 5 The Surface UV Environment on Planets Orbiting M-Dwarfs: Implica- tions for Prebiotic Chemistry & Need for Experimental Follow-Up 259 5.1 Introduction . 261 5.2 Background: Previous Studies of M-dwarf Planet UV . 264 5.3 Methods . 266 5.3.1 Radiative Transfer . 266 5.3.2 Atmospheric Model . 267 5.3.3 Stellar Fluxes . 269 5.3.4 Action Spectra and Calculation of Dose Rates . 271 5.4 Results . 276 5.4.1 Steady-State M-dwarf Emission . 276 5.4.2 M-dwarf Flares . 280 5.5 Discussion . 283 5.5.1 Low-UV on M-dwarfs: A Challenge for Abiogenesis? . 283 5.5.2 Possible Mechanisms to Compensate for Low M-dwarf UV . 287 5.5.3 Laboratory Follow-Up . 290 5.6 Conclusions . 291 5.7 Appendix A: Flare Frequency Distribution Calculation . 293 6 Cyanosulfidic Origins of Life Chemistry: Planetary Sources for Reduc- ing Sulfur Compounds 295 6.1 Introduction .
Recommended publications
  • Chemistry Courses 2005-2006
    Chemistry Courses 2005-2006 Autumn 2005 Chem 11101 General Chemistry I, Variant A Lee Chem 11102 General Chemistry I, Variant B Norris Chem 12200 Honors General Chemistry I Levy Chem 22000 Organic Chemistry I Yu Chem 22300 Intermediate Organic Chemistry Mrksich Chem 26100 Quantum Mechanics Mazziotti Chem 30100 Advanced Inorganic Chemistry Hopkins Chem 30900 Bioinorganic Chemistry He Chem 32100 Physical Organic Chemistry I Ismagilov Chem 32200 Organic Synthesis and Structure Rawal Chem 32600 Protein Fundamentals Piccirilli Chem 36100 Wave Mechanics & Spectroscopy Butler Chem 36400 Chemical Thermodynamics Dinner Winter 2006 Chem 11201 General Chemistry II, Variant A Scherer Chem 11202 General Chemistry II, Variant B Butler Chem 12300 Honors General Chemistry II Dinner Chem 20100 Inorganic Chemistry I Hillhouse Chem 22100 Organic Chemistry II Rawal Chem 23100 Honors Organic Chemistry II Kozmin Chem 26200 Thermodynamics Norris Chem 26700 Experimental Physical Chemistry Levy Chem 30200 Synthesis & Physical Methods in Inorganic Chemistry Jordan Chem 30400 Organometallic Chemistry Bosnich Chem 32300 Tactics of Organic Synthesis Yamamoto Chem 32400 Physical Organic Chemistry II Mrksich Chem 36200 Quantum Mechanics Freed Chem 36300 Statistical Mechanics Mazziotti Chem 38700 Biophysical Chemistry Lee Spring 2006 Chem 11301 General Chemistry III, Variant A Kozmin Chem 11302 General Chemistry III, Variant B Guyot-Sionnest Chem 20200 Inorganic Chemistry II Jordan Chem 22200 Organic Chemistry III Kent Chem 23200 Honors Organic Chemistry III Yamamoto Chem 22700 Advanced Organic / Inorganic Laboratory (8 students) He Chem 26300 Chemical Kinetics and Dynamics Sibner Chem 26800 Computational Chemistry & Biology Freed Chem 30600 Chemistry of the Elements Hillhouse Chem 31100 Supramolecular Chemistry Bosnich Chem 32500 Bioorganic Chemistry Piccirilli Chem 32900 Polymer Chemistry Yu Chem 33000 Complex Systems Ismagilov Chem 36500 Chemical Dynamics Scherer Chem 36800 Advanced Computational Chemistry & Biology Freed .
    [Show full text]
  • Photophoretic Spectroscopy in Atmospheric Chemistry – High-Sensitivity Measurements of Light Absorption by a Single Particle
    Atmos. Meas. Tech., 13, 3191–3203, 2020 https://doi.org/10.5194/amt-13-3191-2020 © Author(s) 2020. This work is distributed under the Creative Commons Attribution 4.0 License. Photophoretic spectroscopy in atmospheric chemistry – high-sensitivity measurements of light absorption by a single particle Nir Bluvshtein, Ulrich K. Krieger, and Thomas Peter Institute for Atmospheric and Climate Science, ETH Zurich, 8092, Switzerland Correspondence: Nir Bluvshtein ([email protected]) Received: 28 February 2020 – Discussion started: 4 March 2020 Revised: 30 April 2020 – Accepted: 16 May 2020 – Published: 18 June 2020 Abstract. Light-absorbing organic atmospheric particles, the UV–vis wavelength range, attributing them with a nega- termed brown carbon, undergo chemical and photochemi- tive (cooling) radiative effect. However, light-absorbing or- cal aging processes during their lifetime in the atmosphere. ganic aerosol, termed brown carbon (BrC), with wavelength- The role these particles play in the global radiative balance dependent light absorption (λ−2 − λ−6) in the UV–vis wave- and in the climate system is still uncertain. To better quan- length range (Chen and Bond, 2010; Hoffer et al., 2004; tify their radiative forcing due to aerosol–radiation interac- Kaskaoutis et al., 2007; Kirchstetter et al., 2004; Lack et al., tions, we need to improve process-level understanding of ag- 2012b; Moosmuller et al., 2011; Sun et al., 2007), may be the ing processes, which lead to either “browning” or “bleach- dominant light absorber downwind of urban and industrial- ing” of organic aerosols. Currently available laboratory tech- ized areas and in biomass burning plumes (Feng et al., 2013).
    [Show full text]
  • Curriculum of Department of Pharmacy (6-Year Program)
    Curriculum of Department of Pharmacy (6-year program) 1st year 2nd year 3rd year 4th year 5th year 6th year Basic Subjects for Pharmacy Student; Lectures and Practices of Basic Specialized Lectures and Practices Drug Therapy and its Related Practical Training and Beginning of Research for Graduation and SGL and more Sciences Research for Graduation Advanced Lectures Fundamental Education Professional Education Ⅰ Professional Education Ⅱ ■Humanism ■Humanism ■Preparatory Pharmacy Education ■Professional Pharmacy Education ■Practical Training ■Advanced Education Introduction to Humanism I Introduction to Humanism Ⅱ English for Pharmacy Oriental Medicine Preparation for Practical Training Research for Graduation Pharmacotherapeutics Practical Training in Hospital Advanced Clinical Training ■Preparatory Pharmacy Education ■Professional Pharmacy Education Drug Information Science Practical Training in Community Phrarmacy General Pharmacy Practice II ■Introduction of Pharmacy Basic English and English for Pharmacy Clinical Chemistry Drug Development and Production Japanese Traditional Medicine Invitation to Pharmacy Basic Statistics Synthesis of Target Molecules Pharmacy and Society ■Advanced Education Clinical Pharmacokinetics Early Exposure to Pharmacy Practical Trainings for Pharmacy Bioorganic Chemistry General Pharmacy Practice Research for Graduation Clinical Drug Evaluation Students Pharmaceutical Health Care Training Medical Economy Natural Products Chemistry ■Practical Training Education Drug Safty Evaluation and Pharmacoepidemiology
    [Show full text]
  • Guest Editorial: My Formative Years with the Rasc by Sara Seager I First Learned About Astronomy As a Small Child
    INTRODUCTION 9 GUEST EDITORIAL: MY FORMATIVE YEARS WITH THE RASC BY SARA SEAGER I first learned about astronomy as a small child. One of my first memories is looking through a telescope at the Moon. I was completely stunned by what I saw. The Moon— huge and filled with craters—was a world in and of itself. I was with my father, at a star party hosted by the RASC. Later, when I was 10 years old and on my first camping trip, I remember awakening late one night, stepping outside the tent, and looking up. Stars—millions of them it seemed—filled the entire sky and took my breath away. As a teenager in the late 1980s, I joined the RASC Toronto Centre and deter- minedly attended the bimonthly Friday night meetings held in what was then the Planetarium building. Much of the information went over my head, but I can still clearly remember the excitement of the group whenever a visiting professor presented on a novel topic. An RASC member offered a one-semester evening class on astron- omy, and we were able to use the planetarium to learn about the night sky. The RASC events were a highlight of my high school and undergraduate years. While majoring in math and physics at the University of Toronto, I was thrilled to intern for two summers at the David Dunlap Observatory (DDO). I carried out an observing program of variable stars (including Polaris, the North Star), using the 61-cm (24″) and 48-cm (19″) telescopes atop the DDO’s administration building for simultaneous photometry of the target and comparison stars.
    [Show full text]
  • Recreating Ancient Metabolic Pathways Before Enzymes Kamila B
    Recreating ancient metabolic pathways before enzymes Kamila B. Muchowska, Elodie Chevallot-Beroux, Joseph Moran To cite this version: Kamila B. Muchowska, Elodie Chevallot-Beroux, Joseph Moran. Recreating ancient metabolic path- ways before enzymes. Bioorganic and Medicinal Chemistry, Elsevier, 2019, 27 (12), pp.2292-2297. 10.1016/j.bmc.2019.03.012. hal-02516541 HAL Id: hal-02516541 https://hal.archives-ouvertes.fr/hal-02516541 Submitted on 23 Mar 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Graphical Abstract To create your abstract, type over the instructions in the template box below. Fonts or abstract dimensions should not be changed or altered. Recreating ancient metabolic pathways Leave this area blank for abstract info. before enzymes Kamila B. Muchowskaa* , Elodie Chevallot-Berouxa, and Joseph Morana* University of Strasbourg, CNRS, ISIS UMR 7006, 67000 Strasbourg, France Bioorganic & Medicinal Chemistry journal homepage: www.elsevier.com Recreating ancient metabolic pathways before enzymes Kamila B. Muchowska,a* Elodie Chevallot-Beroux,a and Joseph Morana* a University of Strasbourg, CNRS, ISIS UMR 7006, 67000 Strasbourg, France. ARTICLE INFO ABSTRACT Article history: The biochemistry of all living organisms uses complex, enzyme-catalyzed metabolic reaction Received networks.
    [Show full text]
  • Me Gustaría Dirigir Una Misión 'Starshade' Para Encontrar Un Gemelo De La Tierra
    CIENCIAS SARA SEAGER, PROFESORA DE FÍSICA Y CIENCIA PLANETARIA EN EL MIT “Me gustaría dirigir una misión ‘starshade’ para encontrar un gemelo de la Tierra” Esta astrofísica del Instituto Tecnológico de Massachusetts (EE UU) está empeñada en observar un planeta extrasolar parecido al nuestro y, para poderlo ver, su sueño es desplegar un enorme ‘girasol’ en el espacio que oculte la cegadora luz de su estrella anfitriona. Es una de las aventuras en las que está embarcada y que cuenta en su último libro, Las luces más diminutas del universo, una historia de amor, dolor y exoplanetas. Enrique Sacristán 30/7/2021 08:30 CEST Sara Seager y uno de los pósteres de exoplanetas (facilitados por el Jet Propulsion Laboratory) que adornan el pasillo de su despacho en el Instituto Tecnológico de Massachusetts. / MIT/JPL- NASA Con tan solo diez años quedó deslumbrada por el cielo estrellado durante una acampada, una experiencia que recomienda a todo el mundo: “Este año la lluvia de meteoros de las perseidas, alrededor del 12 de agosto, cae cerca de una luna nueva, por lo que el cielo estará especialmente oscuro y habrá buenas condiciones para observar las estrellas fugaces”, nos adelanta la astrofísica Sara Seager. Nació en julio de 1971 en Toronto (Canadá) y hoy es una experta mundial en la búsqueda de exoplanetas, en especial los similares a la Tierra y con CIENCIAS indicios de vida. Se graduó en su ciudad natal y se doctoró en Harvard; luego pasó por el Instituto de Estudios Avanzados en Princeton y el Instituto Carnegie de Washington; hasta que en 2007 se asentó como profesora en el Instituto Tecnológico de Massachusetts (MIT).
    [Show full text]
  • Atmospheric Chemistry
    Atmospheric Chemistry John Lee Grenfell Technische Universität Berlin Atmospheres and Habitability (Earthlike) Atmospheres: -support complex life (respiration) -stabilise temperature -maintain liquid water -we can measure their spectra hence life-signs Modern Atmospheric Composition CO2 Modern Atmospheric Composition O2 CO2 N2 CO2 N2 CO2 Modern Atmospheric Composition O2 CO2 N2 CO2 N2 P 93bar 1bar 6mb 1.5bar surface CO2 Tsurface 735K 288K 220K 94K Early Earth Atmospheric Compositions Magma Hadean Archaean Proterozoic Snowball CO2 Early Earth Atmospheric Compositions Magma Hadean Archaean Proterozoic Snowball Silicate CO2 CO2 N2 N2 Steam H2ON2 O2 O2 CO2 Additional terrestrial-type atmospheres Jurassic Earth Early Mars Early Venus Jungleworld Desertworld Waterworld Superearth Modern Atmospheric Composition Today we will talk about these CO2 Reading List Yuk Yung (Caltech) and William DeMore “Photochemistry of Planetary Atmospheres” Richard P. Wayne (Oxford) “Chemistry of Atmospheres” T. Gredel and Paul Crutzen (Mainz) “Chemie der Atmosphäre” Processes influencing Photochemistry Photons Protection Delivery Escape Clouds Photochemistry Surface OCEAN Biology Volcanism Some fundamentals… ALKALI METALS The Periodic Table NOBLE GASES One outer electron Increasing atomic number 8 outer electrons: reactive Rows called PERIODS unreactive GROUPS: similar Halogens chemical C, Si etc. have 4 outer electrons properties SO CAN FORM STABLE CHAINS Chemical Structure and Reactivity s and p orbitals d orbitals The Aufbau Method works OK for the first 18 elements
    [Show full text]
  • Chapter 1 – Introduction
    1 Chapter 1 – Introduction 1.1 – Scientific Background Knowledge of gas phase compounds and their chemical reactions are pivotal to our understanding of chemistry. The conditions these molecules are in can vary dramatically, from temperatures as low as 10 K in the depths of the interstellar medium, to more than 1000 K in the combustion of hydrocarbons in engines. The chemistry in these systems is dominated by highly reactive, unstable compounds, leading to fast and complex chemistry occurring. In order to accurately understand these systems, we must be able to observe these unstable species and measure the kinetics of their formation and destruction. While molecular spectra and reaction rate constants of these reactive compounds can be computed with theoretical calculations, they must be benchmarked with experimental measurements to determine their accuracy. To that end, one major focus in experimental gas phase chemistry is to better understand these unstable molecules and their reactions in systems such as atmospheric chemistry and astrochemistry. 1.1a – Atmospheric Chemistry Understanding Earth’s atmosphere and the chemistry behind it has been a major topic in gas phase chemistry since the mid-20th century, when the impact of fossil fuel usage and air pollution resulting from the Industrial Revolution became apparent. The dominant molecule in Earth’s atmosphere is N2 (77% of the atmosphere) followed by O2 (21%) and argon (1%). The remaining components are largely stable molecules, such as CO2 and H2O. 2 Figure 1.1: The average temperature (left) and pressure (right) profiles of the Earth’s lower atmosphere, consisting of the troposphere and stratosphere.
    [Show full text]
  • A Survey of Carbon Fixation Pathways Through a Quantitative Lens
    Journal of Experimental Botany, Vol. 63, No. 6, pp. 2325–2342, 2012 doi:10.1093/jxb/err417 Advance Access publication 26 December, 2011 REVIEW PAPER A survey of carbon fixation pathways through a quantitative lens Arren Bar-Even, Elad Noor and Ron Milo* Department of Plant Sciences, The Weizmann Institute of Science, Rehovot 76100, Israel * To whom correspondence should be addressed. E-mail: [email protected] Received 15 August 2011; Revised 4 November 2011; Accepted 8 November 2011 Downloaded from Abstract While the reductive pentose phosphate cycle is responsible for the fixation of most of the carbon in the biosphere, it http://jxb.oxfordjournals.org/ has several natural substitutes. In fact, due to the characterization of three new carbon fixation pathways in the last decade, the diversity of known metabolic solutions for autotrophic growth has doubled. In this review, the different pathways are analysed and compared according to various criteria, trying to connect each of the different metabolic alternatives to suitable environments or metabolic goals. The different roles of carbon fixation are discussed; in addition to sustaining autotrophic growth it can also be used for energy conservation and as an electron sink for the recycling of reduced electron carriers. Our main focus in this review is on thermodynamic and kinetic aspects, including thermodynamically challenging reactions, the ATP requirement of each pathway, energetic constraints on carbon fixation, and factors that are expected to limit the rate of the pathways. Finally, possible metabolic structures at Weizmann Institute of Science on July 3, 2016 of yet unknown carbon fixation pathways are suggested and discussed.
    [Show full text]
  • Editorial Highlights for Organi Chemistry: Current Research
    n ISSN: 2161-0401 Organic Chemistry: Current Research Editorial Editorial Note on Bioorganic Chemistry Sandhya Kille Department of Microbiology, Acharya Nagarjuna University, India EDITORIAL structure-function studies of therapeutics, and bio conjugates. Students focused on this area at Oregon Bioorganic chemistry could also be a rapidly growing develop a solid foundation in synthetic chemistry and even content that mixes science and biochemistry. It’s that have the good thing about the outstanding branch of bioscience that deals with the study of biochemistry/molecular biology research environment at biological processes using chemical methods. UO. Bioorganic chemistry applies the principles and Protein and enzyme function are samples of those techniques of chemistry to unravel problems of biological processes. Sometimes biochemistry is utilized relevance, taking inspiration from biology to develop new interchangeably for bioorganic chemistry; the excellence chemical processes. being that bioorganic chemistry is chemistry that's Cornell bioorganic chemists emphasize chemical and focused on the biological aspects. While biochemistry molecular approaches to solving important biological aims at understanding biological processes using problems. Research areas include the applying of chemistry, bioorganic chemistry attempts to expand synthetic and scientific discipline to the study of enzymes, organic-chemical researches (that is, structures, metabolic pathways and nucleic acids. This includes the synthesis, and kinetics) toward biology. event of mechanism-based enzyme inhibitors; elucidation When investigating metalloenzymes and cofactors, of enzyme mechanism and structure and studies of bioorganic chemistry overlaps bioinorganic chemistry. coenzyme reactivity. Chemical investigations are extended Bioorganic Chemistry and Chemical Biology, broadly to studies of receptor recognition, hormone and drug defined, are fields during which organic synthetic activity, and also the mechanism of chemical chemistry plays an unlimited role within the life sciences.
    [Show full text]
  • Exoplanet Exploration Collaboration Initiative TP Exoplanets Final Report
    EXO Exoplanet Exploration Collaboration Initiative TP Exoplanets Final Report Ca Ca Ca H Ca Fe Fe Fe H Fe Mg Fe Na O2 H O2 The cover shows the transit of an Earth like planet passing in front of a Sun like star. When a planet transits its star in this way, it is possible to see through its thin layer of atmosphere and measure its spectrum. The lines at the bottom of the page show the absorption spectrum of the Earth in front of the Sun, the signature of life as we know it. Seeing our Earth as just one possibly habitable planet among many billions fundamentally changes the perception of our place among the stars. "The 2014 Space Studies Program of the International Space University was hosted by the École de technologie supérieure (ÉTS) and the École des Hautes études commerciales (HEC), Montréal, Québec, Canada." While all care has been taken in the preparation of this report, ISU does not take any responsibility for the accuracy of its content. Electronic copies of the Final Report and the Executive Summary can be downloaded from the ISU Library website at http://isulibrary.isunet.edu/ International Space University Strasbourg Central Campus Parc d’Innovation 1 rue Jean-Dominique Cassini 67400 Illkirch-Graffenstaden Tel +33 (0)3 88 65 54 30 Fax +33 (0)3 88 65 54 47 e-mail: [email protected] website: www.isunet.edu France Unless otherwise credited, figures and images were created by TP Exoplanets. Exoplanets Final Report Page i ACKNOWLEDGEMENTS The International Space University Summer Session Program 2014 and the work on the
    [Show full text]
  • Professor Sara Seager Massachusetts Institute of Technology
    Professor Sara Seager Massachusetts Institute of Technology Address: Department of Earth Atmospheric and Planetary Science Building 54 Room 1718 Massachusetts Institute of Technology 77 Massachusetts Avenue Cambridge, MA, USA 02139 Phone: (617) 253-6779 (direct) E-mail: [email protected] Citizenship: US citizen since 7/20/2010 Birthdate: 7/21/1971 Professional History 1/2011–present: Massachusetts Institute of Technology, Cambridge, MA USA • Class of 1941 Professor (1/2012–present) • Professor of Planetary Science (7/2010–present) • Professor of Physics (7/2010–present) • Professor of Aeronautical and Astronautical Engineering (7/2017–present) 1/2007–12/2011: Massachusetts Institute of Technology, Cambridge, MA USA • Ellen Swallow Richards Professorship (1/2007–12/2011) • Associate Professor of Planetary Science (1/2007–6/2010) • Associate Professor of Physics (7/2007–6/2010) • Chair of Planetary Group in the Dept. of Earth, Atmospheric, and Planetary Sciences (2007–2015) 08/2002–12/2006: Carnegie Institution of Washington, Washington, DC, USA • Senior Research Staff Member 09/1999–07/2002: Institute for Advanced Study, Princeton NJ • Long Term Member (02/2001–07/2002) • Short Term Member (09/1999–02/2001) • Keck Fellow Educational History 1994–1999 Ph.D. “Extrasolar Planets Under Strong Stellar Irradiation” Department of Astronomy, Harvard University, MA, USA 1990–1994 B.Sc. in Mathematics and Physics University of Toronto, Canada NSERC Science and Technology Fellowship (1990–1994) Awards and Distinctions Academic Awards and Distinctions 2018 American Philosophical Society Member 2018 American Academy of Arts and Sciences Member 2015 Honorary PhD, University of British Columbia 2015 National Academy of Sciences Member 2013 MacArthur Fellow 2012 Raymond and Beverly Sackler Prize in the Physical Sciences 2012 American Association for the Advancement of Science Fellow 2007 Helen B.
    [Show full text]