Endoplasmic Reticulum and Golgi Stress in Microcephaly
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Genome-Wide Rnai Screens Identify Genes Required for Ricin and PE Intoxications
Developmental Cell Article Genome-Wide RNAi Screens Identify Genes Required for Ricin and PE Intoxications Dimitri Moreau,1 Pankaj Kumar,1 Shyi Chyi Wang,1 Alexandre Chaumet,1 Shin Yi Chew,1 He´ le` ne Chevalley,1 and Fre´ de´ ric Bard1,* 1Institute of Molecular and Cell Biology, 61 Biopolis Drive, Proteos, Singapore 138673, Singapore *Correspondence: [email protected] DOI 10.1016/j.devcel.2011.06.014 SUMMARY In the lumen of the ER, these toxins are thought to interact with elements of the ER-associated degradation (ERAD) pathway, Protein toxins such as Ricin and Pseudomonas which targets misfolded proteins in the ER for degradation. exotoxin (PE) pose major public health challenges. This interaction is proposed to allow translocation to the cytosol Both toxins depend on host cell machinery for inter- without resulting in toxin degradation (Johannes and Ro¨ mer, nalization, retrograde trafficking from endosomes 2010). to the ER, and translocation to cytosol. Although Obviously, this complex set of membrane-trafficking and both toxins follow a similar intracellular route, it is membrane-translocation events involves many host proteins, some of which have already been described (Johannes and unknown how much they rely on the same genes. Ro¨ mer, 2010; Sandvig et al., 2010). Altering the function of these Here we conducted two genome-wide RNAi screens host proteins could in theory provide a toxin antidote. identifying genes required for intoxication and Consistently, inhibition of retrograde traffic by drugs such as demonstrating that requirements are strikingly Brefeldin A (Sandvig et al., 1991)(Yoshida et al., 1991) or Golgi- different between PE and Ricin, with only 13% over- cide A (Sa´ enz et al., 2009) and Retro-1 and 2 (Stechmann et al., lap. -
The Complete Genome Sequence of Mycobacterium Avium Subspecies Paratuberculosis
The complete genome sequence of Mycobacterium avium subspecies paratuberculosis Lingling Li*†‡, John P. Bannantine‡§, Qing Zhang*†‡, Alongkorn Amonsin*†‡, Barbara J. May*†, David Alt§, Nilanjana Banerji†¶, Sagarika Kanjilal†‡¶, and Vivek Kapur*†‡ʈ *Department of Microbiology, †Biomedical Genomics Center, and ¶Department of Medicine, University of Minnesota, St. Paul, MN 55108; and §National Animal Disease Center, U.S. Department of Agriculture–Agriculture Research Service, Ames, IA 50010 Communicated by Harley W. Moon, Iowa State University, Ames, IA, July 13, 2005 (received for review March 18, 2005) We describe here the complete genome sequence of a common Map and Mav (11–13). Therefore, it is widely recognized that the clone of Mycobacterium avium subspecies paratuberculosis (Map) development of rapid, sensitive, and specific assays to identify strain K-10, the causative agent of Johne’s disease in cattle and infected animals is essential to the formulation of rational other ruminants. The K-10 genome is a single circular chromosome strategies to control the spread of Map. of 4,829,781 base pairs and encodes 4,350 predicted ORFs, 45 As a first step toward elucidating the molecular basis of Map’s tRNAs, and one rRNA operon. In silico analysis identified >3,000 physiology and virulence, and providing a foundation for the genes with homologs to the human pathogen, M. tuberculosis development of the next generation of Map diagnostic tests and (Mtb), and 161 unique genomic regions that encode 39 previously vaccines, we report the complete genome sequence of a common unknown Map genes. Analysis of nucleotide substitution rates clone of Map, strain K-10. with Mtb homologs suggest overall strong selection for a vast majority of these shared mycobacterial genes, with only 68 ORFs Materials and Methods with a synonymous to nonsynonymous substitution ratio of >2. -
Molecular Genetics of Microcephaly Primary Hereditary: an Overview
brain sciences Review Molecular Genetics of Microcephaly Primary Hereditary: An Overview Nikistratos Siskos † , Electra Stylianopoulou †, Georgios Skavdis and Maria E. Grigoriou * Department of Molecular Biology & Genetics, Democritus University of Thrace, 68100 Alexandroupolis, Greece; [email protected] (N.S.); [email protected] (E.S.); [email protected] (G.S.) * Correspondence: [email protected] † Equal contribution. Abstract: MicroCephaly Primary Hereditary (MCPH) is a rare congenital neurodevelopmental disorder characterized by a significant reduction of the occipitofrontal head circumference and mild to moderate mental disability. Patients have small brains, though with overall normal architecture; therefore, studying MCPH can reveal not only the pathological mechanisms leading to this condition, but also the mechanisms operating during normal development. MCPH is genetically heterogeneous, with 27 genes listed so far in the Online Mendelian Inheritance in Man (OMIM) database. In this review, we discuss the role of MCPH proteins and delineate the molecular mechanisms and common pathways in which they participate. Keywords: microcephaly; MCPH; MCPH1–MCPH27; molecular genetics; cell cycle 1. Introduction Citation: Siskos, N.; Stylianopoulou, Microcephaly, from the Greek word µικρoκεϕαλi´α (mikrokephalia), meaning small E.; Skavdis, G.; Grigoriou, M.E. head, is a term used to describe a cranium with reduction of the occipitofrontal head circum- Molecular Genetics of Microcephaly ference equal, or more that teo standard deviations -
1 the TRAPP Complex Mediates Secretion Arrest Induced
bioRxiv preprint doi: https://doi.org/10.1101/528380; this version posted January 23, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 The TRAPP complex mediates secretion arrest induced by stress granule assembly 2 3 Francesca Zappa1, Cathal Wilson1, Giuseppe Di Tullio1, Michele Santoro1, Piero Pucci2, 4 Maria Monti2, Davide D’Amico1, Sandra Pisonero Vaquero1, Rossella De Cegli1, 5 Alessia Romano1, Moin A. Saleem3, Elena Polishchuk1, Mario Failli1, Laura Giaquinto1, 6 Maria Antonietta De Matteis1, 2 7 1 Telethon Institute of Genetics and Medicine, Pozzuoli (Naples), Italy 8 2 Federico II University, Naples, Italy 9 3 Bristol Renal, Bristol Medical School, University of Bristol, UK 10 11 Correspondence to: [email protected], [email protected] 12 1 bioRxiv preprint doi: https://doi.org/10.1101/528380; this version posted January 23, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 13 The TRAnsport Protein Particle (TRAPP) complex controls multiple steps along the 14 secretory, endocytic and autophagic pathways and is thus strategically positioned 15 to mediate the adaptation of membrane trafficking to diverse environmental 16 conditions including acute stress. We identified TRAPP as a key component of a 17 branch of the integrated stress response that impinges on the secretory pathway. -
ER-To-Golgi Trafficking and Its Implication in Neurological Diseases
cells Review ER-to-Golgi Trafficking and Its Implication in Neurological Diseases 1,2, 1,2 1,2, Bo Wang y, Katherine R. Stanford and Mondira Kundu * 1 Department of Pathology, St. Jude Children’s Research Hospital, Memphis, TN 38105, USA; [email protected] (B.W.); [email protected] (K.R.S.) 2 Department of Cell and Molecular Biology, St. Jude Children’s Research Hospital, Memphis, TN 38105, USA * Correspondence: [email protected]; Tel.: +1-901-595-6048 Present address: School of Life Sciences, Xiamen University, Xiamen 361102, China. y Received: 21 November 2019; Accepted: 7 February 2020; Published: 11 February 2020 Abstract: Membrane and secretory proteins are essential for almost every aspect of cellular function. These proteins are incorporated into ER-derived carriers and transported to the Golgi before being sorted for delivery to their final destination. Although ER-to-Golgi trafficking is highly conserved among eukaryotes, several layers of complexity have been added to meet the increased demands of complex cell types in metazoans. The specialized morphology of neurons and the necessity for precise spatiotemporal control over membrane and secretory protein localization and function make them particularly vulnerable to defects in trafficking. This review summarizes the general mechanisms involved in ER-to-Golgi trafficking and highlights mutations in genes affecting this process, which are associated with neurological diseases in humans. Keywords: COPII trafficking; endoplasmic reticulum; Golgi apparatus; neurological disease 1. Overview Approximately one-third of all proteins encoded by the mammalian genome are exported from the endoplasmic reticulum (ER) and transported to the Golgi apparatus, where they are sorted for delivery to their final destination in membrane compartments or secretory vesicles [1]. -
The Yin and Yang of Autosomal Recessive Primary Microcephaly Genes: Insights from Neurogenesis and Carcinogenesis
International Journal of Molecular Sciences Review The Yin and Yang of Autosomal Recessive Primary Microcephaly Genes: Insights from Neurogenesis and Carcinogenesis Xiaokun Zhou 1, Yiqiang Zhi 1, Jurui Yu 1 and Dan Xu 1,2,* 1 College of Biological Science and Engineering, Institute of Life Sciences, Fuzhou University, Fuzhou 350108, China; [email protected] (X.Z.); [email protected] (Y.Z.); [email protected] (J.Y.) 2 Fujian Key Laboratory of Molecular Neurology, Institute of Neuroscience, Fujian Medical University, Fuzhou 350005, China * Correspondence: [email protected]; Tel.: +86-17085937559 Received: 17 December 2019; Accepted: 26 February 2020; Published: 1 March 2020 Abstract: The stem cells of neurogenesis and carcinogenesis share many properties, including proliferative rate, an extensive replicative potential, the potential to generate different cell types of a given tissue, and an ability to independently migrate to a damaged area. This is also evidenced by the common molecular principles regulating key processes associated with cell division and apoptosis. Autosomal recessive primary microcephaly (MCPH) is a neurogenic mitotic disorder that is characterized by decreased brain size and mental retardation. Until now, a total of 25 genes have been identified that are known to be associated with MCPH. The inactivation (yin) of most MCPH genes leads to neurogenesis defects, while the upregulation (yang) of some MCPH genes is associated with different kinds of carcinogenesis. Here, we try to summarize the roles of MCPH genes in these two diseases and explore the underlying mechanisms, which will help us to explore new, attractive approaches to targeting tumor cells that are resistant to the current therapies. -
1 the TRAPP Complex Mediates Secretion Arrest Induced by Stress Granule Assembly Francesca Zappa1, Cathal Wilson1, Giusepp
bioRxiv preprint doi: https://doi.org/10.1101/528380; this version posted February 5, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. The TRAPP complex mediates secretion arrest induced by stress granule assembly Francesca Zappa1, Cathal Wilson1, Giuseppe Di Tullio1, Michele Santoro1, Piero Pucci2, Maria Monti2, Davide D’Amico1, Sandra Pisonero Vaquero1, Rossella De Cegli1, Alessia Romano1, Moin A. Saleem3, Elena Polishchuk1, Mario Failli1, Laura Giaquinto1, Maria Antonietta De Matteis1, 2 1 Telethon Institute of Genetics and Medicine, Pozzuoli (Naples), Italy 2 Federico II University, Naples, Italy 3 Bristol Renal, Bristol Medical School, University of Bristol, UK Correspondence to: [email protected], [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/528380; this version posted February 5, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. The TRAnsport-Protein-Particle (TRAPP) complex controls multiple membrane trafficking steps and is thus strategically positioned to mediate cell adaptation to diverse environmental conditions, including acute stress. We have identified TRAPP as a key component of a branch of the integrated stress response that impinges on the early secretory pathway. TRAPP associates with and drives the recruitment of the COPII coat to stress granules (SGs) leading to vesiculation of the Golgi complex and an arrest of ER export. -
Allwithnames.Pdf
Erythrocytes take up oxygen and release carbon dioxide AL1A1 ADH6ADHXADH7 ADH1G ADH1B ADH4 AL1B1 Cyclin E associated events during G1/S transition FRS-mediated FGFR4 signaling ADH1A CP2E1CP2B6 CP2A6 CP2CJCP2C8 CP2AD CP2C9 CP2D6 Pyrimidine salvageKHK TRP channels AL1A3 CP2J2Fanconi Anemia Pathway AL1A2 I23O1KMO Synthesis of bile acids and bile HYESsalts via 27-hydroxycholesterol AADATKYNUT23O Cobalamin (Cbl, vitamin B12) transport and metabolism CP3A5 ARMS-mediated activation Syndecan interactionsCP3A4 CP1A2 Tryptophan catabolism PANK3PANK2 Abacavir metabolism PANK1 Advanced glycosylation endproduct receptor signaling KCNK3 KCNK9 Loss of ALDH2proteins required for interphase microtubule organization from the centrosome XAV939 inhibits tankyrase, stabilizing AXIN Phase 2 - plateau phase KCNK2 Orc1 removal from chromatin Mineralocorticoid biosynthesis S22A6 S22ABS22AC CP26A Truncations of AMER1 destabilize the destruction complex Cytosolic sensorsPurine ribonucleoside of pathogen-associated monophosphate DNA biosynthesis ST1E1 UMPSPYRD CholineCGAT1 catabolism TPST2ST1A1 Separation ofTPH1 Sister Chromatids Methionine INMTsalvage pathway Phase 4 - restingHPPD membrane potential Classical antibody-mediatedKCNJ4 complement activation Phase I - Functionalization of compounds KCNJ2 Cargo recognition for clathrin-mediatedBODG endocytosis ENTP3ENTP1 CP1B1 ADAL ENTP2 CD38 Costimulation by the CD28 family N-glycan trimming in the ER and Calnexin/Calreticulin cycle METK2TPMT BHMT1 PGH1 Metalloprotease DUBs Retrograde neurotrophin signalling DHSO Caspase-mediated -
Glycosylation and Sorting of Secretory Proteins in the Endoplasmic
CORE brought to you by Recent Publications is this Series: LEENA KARHINEN Gl Helsingin yliopiston digitaalinen arkisto 23/2004 Ilona Oksanen Specificity in Cyanobacterial Lichen Symbiosis and Bioactive Metabolites (Ethylene and Microcystins) 24/2004 Tapani Koskenkari provided by Outsourcing Process and Its Impacts on Pharmaceutical Production 25/2004 Tiina Kauppila Atmospheric Pressure Photoionization-Mass Spectrometry 26/2004 Mikael Björklund ycosylation and sorting of secretory proteins in the endoplasmic reticulum of the yeast Gelatinase-mediated Migration and Invasion of Cancer Cells 27/2004 Mark Tummers To the Root of the Stem Cell Problem – The Evolutionary Importance of the Epithelial Stem Cell Niche During Tooth Development 28/2004 Tuula Puhakainen Physiological and Molecular Analysis of Plant Cold Acclimation 29/2004 Tuija Mustonen Ectodermal Organ Development: Regulation by Notch and Eda Pathways 30/2004 Leo Rouhiainen Characterisation of Anabaena Cyanobacteria: Repeated Sequences and Genes Involved in Biosynthesis of Microcystins and Anabaenopeptilides 31/2004 Shea Beasley Isolation, Identification and Exploitation of Lactic Acid Bacteria from Human and Animal Microbiota 32/2004 Teijo Yrjönen Extraction and Planar Chromatographic Separation Techniques in the Analysis of Natural Products 33/2004 Päivi Tammela Screening Methods for the Evaluation of Biological Activity in Drug Discovery Glycosylation and Sorting of Secretory Proteins 34/2004 Johanna Furuhjelm Rab8 and R-Ras as Modulators of Cell Shape in the Endoplasmic Reticulum -
Structure and Mechanism of TRAPPIII-Mediated Rab1 Activation
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.08.332312; this version posted October 8, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Structure and mechanism of TRAPPIII-mediated Rab1 activation Aaron M.N. Joiner1, Ben P. Phillips2, Kumar Yugandhar3, Ethan J. Sanford1, Marcus B. Smolka1, Haiyuan Yu3, Elizabeth A. Miller2, J. Christopher Fromme1,4 1 Department of Molecular Biology and Genetics/Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY, USA 2 MRC Laboratory of Molecular Biology, Cambridge, United Kingdom 3 Department of Computational Biology/Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY, USA 4 Corresponding author: [email protected] ABSTRACT The GTPase Rab1 is a master regulator of both the early secretory pathWay and autophagy. Rab1 activation is controlled by its GEF (guanine nucleotide exchange factor), the multi-subunit TRAPPIII complex. The Trs85 regulatory subunit is critical for robust activation of Rab1 but its mechanistic role Within the complex has remained unclear. Here We report the cryo-EM structure of the intact yeast TRAPPIII complex bound to its substrate Rab1/Ypt1. The orientation of the Rab1/Ypt1 hypervariable domain When bound to the complex leads to a model for hoW TRAPPIII associates With and activates Rab1/Ypt1 at the membrane surface. We identify a conserved amphipathic a-helix motif within Trs85 and demonstrate that this helix is required for stable membrane binding and Rab1/Ypt1 activation by TRAPPIII. -
19432.Full.Pdf
The EM structure of the TRAPPIII complex leads to the identification of a requirement for COPII vesicles on the macroautophagy pathway Dongyan Tana,b,1, Yiying Caic,1, Juan Wangd,e, Jinzhong Zhangd,e, Shekar Menond,e,2, Hui-Ting Choua,b, Susan Ferro-Novickd,e,3, Karin M. Reinischc,3, and Thomas Walza,b,3 aDepartment of Cell Biology, bHoward Hughes Medical Institute, Harvard Medical School, Boston, MA 02115; cDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT 06520; and dDepartment of Cellular and Molecular Medicine, eHoward Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093 Edited by Axel T. Brunger, Stanford University, Stanford, CA, and approved October 22, 2013 (received for review August 29, 2013) The transport protein particle (TRAPP) III complex, comprising the Atg1 kinase, to the PAS (9). TRAPPIII is one of three multimeric TRAPPI complex and additional subunit Trs85, is an autophagy- GEFs, called TRAPPI, TRAPPII, and TRAPPIII, that activate Ypt1 specific guanine nucleotide exchange factor for the Rab GTPase on different trafficking pathways (10). TRAPPI, an elongated com- Ypt1 that is recruited to the phagophore assembly site when plex ∼18 nm in length (11, 12), binds to ER-derived COPII-coated macroautophagy is induced. We present the single-particle elec- vesicles via an interaction between the TRAPPI subunit Bet3 and the tron microscopy structure of TRAPPIII, which reveals that the dome- coat subunit Sec23 (11, 13). The TRAPPIII complex contains the shaped Trs85 subunit associates primarily with the Trs20 subunit same six subunits present in TRAPPI plus one unique subunit, Trs85, of TRAPPI. -
Identification of Conserved, Centrosome-Targeting ASH Domains in TRAPPII Complex Subunits and TRAPPC8
Identification of conserved, centrosome-targeting ASH domains in TRAPPII complex subunits and TRAPPC8 Schou, Kenneth Bødtker; Morthorst, Stine Kjær; Christensen, Søren Tvorup; Pedersen, Lotte Bang Published in: Cilia DOI: 10.1186/2046-2530-3-6 Publication date: 2014 Document version Publisher's PDF, also known as Version of record Citation for published version (APA): Schou, K. B., Morthorst, S. K., Christensen, S. T., & Pedersen, L. B. (2014). Identification of conserved, centrosome-targeting ASH domains in TRAPPII complex subunits and TRAPPC8. Cilia, 3(6). https://doi.org/10.1186/2046-2530-3-6 Download date: 24. Sep. 2021 Schou et al. Cilia 2014, 3:6 http://www.ciliajournal.com/content/3/1/6 RESEARCH Open Access Identification of conserved, centrosome-targeting ASH domains in TRAPPII complex subunits and TRAPPC8 Kenneth B Schou1,2, Stine K Morthorst1, Søren T Christensen1 and Lotte B Pedersen1* Abstract Background: Assembly of primary cilia relies on vesicular trafficking towards the cilium base and intraflagellar transport (IFT) between the base and distal tip of the cilium. Recent studies have identified several key regulators of these processes, including Rab GTPases such as Rab8 and Rab11, the Rab8 guanine nucleotide exchange factor Rabin8, and the transport protein particle (TRAPP) components TRAPPC3, -C9, and -C10, which physically interact with each other and function together with Bardet Biedl syndrome (BBS) proteins in ciliary membrane biogenesis. However, despite recent advances, the exact molecular mechanisms by which these proteins interact and target to the basal body to promote ciliogenesis are not fully understood. Results: We surveyed the human proteome for novel ASPM, SPD-2, Hydin (ASH) domain-containing proteins.