How Do Ecological Journals Stack-Up? Ranking of Scientific Quality According to the H Index1
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Alternative Stable States of Tidal Marsh Vegetation Patterns and Channel Complexity
ECOHYDROLOGY Ecohydrol. (2016) Published online in Wiley Online Library (wileyonlinelibrary.com) DOI: 10.1002/eco.1755 Alternative stable states of tidal marsh vegetation patterns and channel complexity K. B. Moffett1* and S. M. Gorelick2 1 School of the Environment, Washington State University Vancouver, Vancouver, WA, USA 2 Department of Earth System Science, Stanford University, Stanford, CA, USA ABSTRACT Intertidal marshes develop between uplands and mudflats, and develop vegetation zonation, via biogeomorphic feedbacks. Is the spatial configuration of vegetation and channels also biogeomorphically organized at the intermediate, marsh-scale? We used high-resolution aerial photographs and a decision-tree procedure to categorize marsh vegetation patterns and channel geometries for 113 tidal marshes in San Francisco Bay estuary and assessed these patterns’ relations to site characteristics. Interpretation was further informed by generalized linear mixed models using pattern-quantifying metrics from object-based image analysis to predict vegetation and channel pattern complexity. Vegetation pattern complexity was significantly related to marsh salinity but independent of marsh age and elevation. Channel complexity was significantly related to marsh age but independent of salinity and elevation. Vegetation pattern complexity and channel complexity were significantly related, forming two prevalent biogeomorphic states: complex versus simple vegetation-and-channel configurations. That this correspondence held across marsh ages (decades to millennia) -
Fractional Authorship & Publication Productivity
ICSR PERSPECTIVES ICSR Fractional Authorship & Publication Productivity Highlights Authors divide their research output across publications, contributing via research collaborations The trend is for authors to produce more publications per year (increased fractionalization) but for the overall number of publications per author to decrease We suggest that the effort required to participate in research collaborations is a factor in the decrease in publications per author AUGUST 2019 AUGUST Are authors collaborating more in response to the pressure to publish? Growth in the number The “publish or perish” research reasons; for instance, to gain access of scholarly publications culture provides incentives for to samples, field sites, research each year has been well researchers to have long publication facilities, or patient groups. lists on their CVs, especially where Researchers wishing to study topics documented (e.g., Bornmann those publications appear in high- outside their own expertise require & Mutz, 2015, Figure 1). But impact journals (Tregoning, 2018). interdisciplinary collaborators or may how has that growth been By examining authorship trends, we simply look to find co-authors whose achieved? Is it purely due aim to understand if researchers are skills and knowledge complement to increasing investment in responding to the pressure to publish their own. Evidence suggests that research, resulting in a greater by fractionalizing themselves across diverse research teams are more more papers and whether this leads likely to be successful at problem number of active researchers? to more publication outputs overall. solving (e.g., Phillips, Northcraft, & Or is each researcher Does increasing collaboration enable Neale, 2006) and that publications producing more publications? each researcher to be involved with, by collaborative teams benefit from To investigate these questions, and produce more, research? a citation advantage (e.g., Glanzel, we build on Plume & van 2001). -
Strategies for Complete Plastid Genome Sequencing
Edinburgh Research Explorer Strategies for complete plastid genome sequencing Citation for published version: Twyford, A & Ness, R 2017, 'Strategies for complete plastid genome sequencing', Molecular Ecology Resources, vol. 17, no. 5, pp. 858-868. https://doi.org/10.1111/1755-0998.12626 Digital Object Identifier (DOI): 10.1111/1755-0998.12626 Link: Link to publication record in Edinburgh Research Explorer Document Version: Publisher's PDF, also known as Version of record Published In: Molecular Ecology Resources Publisher Rights Statement: © 2016 The Authors. Molecular Ecology Resources Published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The University of Edinburgh has made every reasonable effort to ensure that Edinburgh Research Explorer content complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 28. Sep. 2021 Molecular Ecology Resources (2016) doi: 10.1111/1755-0998.12626 Strategies for complete plastid genome sequencing ALEX D. TWYFORD* and ROB W. NESS† *Institute of Evolutionary Biology, Ashworth Laboratories, University of Edinburgh, Edinburgh EH9 3FL, UK, †Department of Biology, University of Toronto Mississauga, Mississauga, ON, Canada Abstract Plastid sequencing is an essential tool in the study of plant evolution. -
Christopher William Dick University of Michigan Department of Ecology and Evolutionary Biology Biological Science Building Room 2068, 1105 N
Christopher William Dick University of Michigan Department of Ecology and Evolutionary Biology Biological Science Building Room 2068, 1105 N. University Ave Ann Arbor, MI 48109-1085 734-764-9408 (voice) 734-763-0544 (fax) [email protected] orcid.org/0000-0001-8745-9137 http://sites.lsa.umich.edu/cwdick-lab/ Education 1999 Ph.D. Department of Organismic and Evolutionary Biology, Harvard University 1997 M.A. Department of Organismic and Evolutionary Biology, Harvard University 1990 B.A. Hampshire College, Amherst, Massachusetts Present Appointments 2017- Associate Chair for Museum Collections (UM Herbarium and Museum of Zoology) 2016- Professor and Curator, EEB Department, University of Michigan 2006- Research Associate, Smithsonian Tropical Research Institute Previous Appointments 2015-2017 Associate Chair for Museum Collections (UM Herbarium) 2014-2017 Director of the Edwin S. George Reserve, University of Michigan 2011-2016 Associate Professor and Associate Curator, University of Michigan 2012-2013 Acting Director of the U-M Herbarium/ Associate Chair for Museum Collections 2005-2011 Assistant Professor and Assistant Curator, University of Michigan 2002-2005 Tupper Postdoctoral Fellow, Smithsonian Tropical Research Institute 2001-2002 Mellon Postdoctoral Fellow, Smithsonian Tropical Research Institute 1999-2001 Molecular Evolution Postdoctoral Fellow, Smithsonian Tropical Research Institute 1992-1999 Graduate student, Harvard University 1992 Botanical Intern, Biological Dynamics of Forest Fragments Project, Manaus, Brazil 1991 Field Biologist, U.S. Forest Service, Globe Forest District, Arizona Publication List (*Student or post-doc working in the Dick lab) for citation history see https://scholar.google.com/citations?user=7iy44V4AAAAJ 1. Mander, L., C. Parins-Fukuchi*, C. W. Dick, S. W. Punyasena, C. Jaramillo (in review) Phylogenetic and ecological drivers of pollen morphological diversity in a Neotropical rainforest. -
Multiple Stable States and Regime Shifts - Environmental Science - Oxford Bibliographies 3/30/18, 10:15 AM
Multiple Stable States and Regime Shifts - Environmental Science - Oxford Bibliographies 3/30/18, 10:15 AM Multiple Stable States and Regime Shifts James Heffernan, Xiaoli Dong, Anna Braswell LAST MODIFIED: 28 MARCH 2018 DOI: 10.1093/OBO/9780199363445-0095 Introduction Why do ecological systems (populations, communities, and ecosystems) change suddenly in response to seemingly gradual environmental change, or fail to recover from large disturbances? Why do ecological systems in seemingly similar settings exhibit markedly different ecological structure and patterns of change over time? The theory of multiple stable states in ecological systems provides one potential explanation for such observations. In ecological systems with multiple stable states (or equilibria), two or more configurations of an ecosystem are self-maintaining under a given set of conditions because of feedbacks among biota or between biota and the physical and chemical environment. The resulting multiple different states may occur as different types or compositions of vegetation or animal communities; as different densities, biomass, and spatial arrangement; and as distinct abiotic environments created by the distinct ecological communities. Alternative states are maintained by the combined effects of positive (or amplifying) feedbacks and negative (or stabilizing feedbacks). While stabilizing feedbacks reinforce each state, positive feedbacks are what allow two or more states to be stable. Thresholds between states arise from the interaction of these positive and negative feedbacks, and define the basins of attraction of the alternative states. These feedbacks and thresholds may operate over whole ecosystems or give rise to self-organized spatial structure. The combined effect of these feedbacks is also what gives rise to ecological resilience, which is the capacity of ecological systems to absorb environmental perturbations while maintaining their basic structure and function. -
Population Size and Genetic Diversity of Nigerian Lions (Panthera Leo)
POPULATION SIZE AND GENETIC DIVERSITY OF NIGERIAN LIONS (PANTHERA LEO) POPULATION SIZE AND GENETIC DIVERSITY OF NIGERIAN LIONS (PANTHERA LEO) Talatu Tende AKADEMISK AVHANDLING Som för av filosofie doktorsexamen vid naturvetenskapliga fakulteten, Lunds universitet, kommer att offentligen försvaras i Blå Hallen, Ekologihuset, Lund, Fredagen den 31 January 2014, kl.9:00. ACADEMIC DISSERTATION Presented in fulfilment of the requirements for the degree of Philosophie Doctor at the Faculty of Science, Lund University, to be defended publicly in the Blue Hall, Ecology Building, Sölvegatan 37, Lund, Sweden, Friday 31st January 2014, 9 AM. Fakultetsopponent: Göran Spong, Swedish University of Agricultural Sciences, Umeå POPULATION SIZE AND GENETIC DIVERSITY OF NIGERIAN LIONS (PANTHERA LEO) Talatu Tende A doctoral thesis at a university in Sweden is produced either as a monograph or as a collection of papers. In the latter case, the introductory part constitutes the formal thesis, which summa- rizes the accompanying papers. These have either already been published or are manuscripts at various stages (in press, submitted or in ms). Copyright © Talatu Tende Department of Biology | Lund University Cover art and intro chapter title art: Stina Andersson Layout and formatting: Katarina Eriksson Printed in Sweden at Media Tryck, Lund, 2013 ISBN: 978-91-7473-773-8 CONTENTS List of papers 8 List of contribution 8 Introduction 11 References 30 Popular Summary 37 Acknowledgments 39 Papers Paper I 45 Paper II 57 Paper III 73 Paper IV 85 Paper V 91 7 LIST OF PAPERS This thesis is based on the following papers which are referred to by their Roman numerals. I Ulf Ottosson, Talatu Tende, Christian Hjort & Bengt Hansson. -
Ectomycorrhizal Fungal Communities at Forest Edges 93, 244–255 IAN A
Journal of Blackwell Publishing, Ltd. Ecology 2005 Ectomycorrhizal fungal communities at forest edges 93, 244–255 IAN A. DICKIE and PETER B. REICH Department of Forest Resources, University of Minnesota, St Paul, MN, USA Summary 1 Ectomycorrhizal fungi are spatially associated with established ectomycorrhizal vegetation, but the influence of distance from established vegetation on the presence, abundance, diversity and community composition of fungi is not well understood. 2 We examined mycorrhizal communities in two abandoned agricultural fields in Minnesota, USA, using Quercus macrocarpa seedlings as an in situ bioassay for ecto- mycorrhizal fungi from 0 to 20 m distance from the forest edge. 3 There were marked effects of distance on all aspects of fungal communities. The abundance of mycorrhiza was uniformly high near trees, declined rapidly around 15 m from the base of trees and was uniformly low at 20 m. All seedlings between 0 and 8 m distance from forest edges were ectomycorrhizal, but many seedlings at 16–20 m were uninfected in one of the two years of the study. Species richness of fungi also declined with distance from trees. 4 Different species of fungi were found at different distances from the edge. ‘Rare’ species (found only once or twice) dominated the community at 0 m, Russula spp. were dominants from 4 to 12 m, and Astraeus sp. and a Pezizalean fungus were abundant at 12 m to 20 m. Cenococcum geophilum, the most dominant species found, was abundant both near trees and distant from trees, with lowest relative abundance at intermediate distances. 5 Our data suggest that seedlings germinating at some distance from established ecto- mycorrhizal vegetation (15.5 m in the present study) have low levels of infection, at least in the first year of growth. -
What Is a Population? an Empirical Evaluation of Some Genetic Methods for Identifying the Number of Gene Pools and Their Degree of Connectivity
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Publications, Agencies and Staff of the U.S. Department of Commerce U.S. Department of Commerce 2006 What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity Robin Waples NOAA, [email protected] Oscar Gaggiotti Université Joseph Fourier, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/usdeptcommercepub Waples, Robin and Gaggiotti, Oscar, "What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity" (2006). Publications, Agencies and Staff of the U.S. Department of Commerce. 463. https://digitalcommons.unl.edu/usdeptcommercepub/463 This Article is brought to you for free and open access by the U.S. Department of Commerce at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications, Agencies and Staff of the U.S. Department of Commerce by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Molecular Ecology (2006) 15, 1419–1439 doi: 10.1111/j.1365-294X.2006.02890.x INVITEDBlackwell Publishing Ltd REVIEW What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity ROBIN S. WAPLES* and OSCAR GAGGIOTTI† *Northwest Fisheries Science Center, 2725 Montlake Blvd East, Seattle, WA 98112 USA, †Laboratoire d’Ecologie Alpine (LECA), Génomique des Populations et Biodiversité, Université Joseph Fourier, Grenoble, France Abstract We review commonly used population definitions under both the ecological paradigm (which emphasizes demographic cohesion) and the evolutionary paradigm (which emphasizes reproductive cohesion) and find that none are truly operational. -
Detecting Trends in Species Composition Thomas E
Iowa State University From the SelectedWorks of Philip Dixon 1998 Detecting trends in species composition Thomas E. Philippi, University of Georgia Philip Dixon, University of Georgia Barbara E. Taylor, University of Georgia Available at: https://works.bepress.com/philip-dixon/36/ 300 INVITED FEATURE Ecological Applications Vol. 8, No. 2 Ecological Applications, 8(2), 1998, pp. 300±308 q 1998 by the Ecological Society of America DETECTING TRENDS IN SPECIES COMPOSITION THOMAS E. PHILIPPI,PHILIP M. DIXON, AND BARBARA E. TAYLOR Savannah River Ecology Laboratory, Drawer E, Aiken, South Carolina 29802-0005 USA Abstract. Species composition re¯ects a combination of environmental and historical events at a site; hence, changes in species composition can provide a sensitive measure of ecologically relevant changes in the environment. Here, we consider the analysis of species composition when multiple sites are followed through time. Analyses of temporal trends in species composition either summarize species compo- sition into a few metrics (indices or axis scores) or analyze the similarity among sites. We develop and illustrate the similarity approach. Each pair of samples represents a pair of replicates, a pair from the same site at different times, a pair from different sites at the same time, or an unrelated pair. Differences among times can be estimated by comparing average temporal dissimilarity to average replicate dissimilarity. Temporal trends can be described by one of three statistics that measure progressive change, the correlation of temporal dissimilarity with the length of time between samples. These methods are illus- trated using data on changes in a South Carolina zooplankton assemblage following dis- turbance, and changes in bird species composition on Skokholm Island, Wales. -
Information Theory Broadens the Spectrum of Molecular Ecology and Evolution
Please do not remove this page Information Theory Broadens the Spectrum of Molecular Ecology and Evolution Sherwin, William B.; Chao, Anne; Jost, Lou; et.al. https://scholarship.libraries.rutgers.edu/discovery/delivery/01RUT_INST:ResearchRepository/12643432920004646?l#13643526500004646 Sherwin, W. B., Chao, A., Jost, L., & Smouse, P. E. (2017). Information Theory Broadens the Spectrum of Molecular Ecology and Evolution. In Trends in Ecology And Evolution (Vol. 32, Issue 12, pp. 948–963). Rutgers University. https://doi.org/10.7282/T3Z89GD4 This work is protected by copyright. You are free to use this resource, with proper attribution, for research and educational purposes. Other uses, such as reproduction or publication, may require the permission of the copyright holder. Downloaded On 2021/09/24 16:12:15 -0400 1 Information Theory Broadens the Spectrum of 2 Molecular Ecology and Evolution 3 4 5 W.B. Sherwin 1 * 6 A. Chao 2 7 L. Jost 3 8 P.E. Smouse 4 9 10 Addresses: 11 1 Evolution and Ecology Research Centre, School of Biological Earth and Environmental Science, 12 University of New South Wales, Sydney NSW 2052 AUSTRALIA. 13 and 14 Murdoch University Cetacean Research Unit, Murdoch University, South Road, Murdoch, WA 6150 15 AUSTRALIA. 16 2 Institute of Statistics, National Tsing Hua University, Hsin-Chu 30043, Taiwan. 17 3 EcoMinga Foundation, Via a Runtun, Baños, Tungurahua, Ecuador 18 4 Department of Ecology, Evolution and Natural Resources, School of Environmental and Biological 19 Sciences, Rutgers University, New Brunswick, NJ 08901-8551, -
Curriculum Vitae Fulbright Postdoctoral Fellow Soil and Fungal
1 LOUISE M. EGERTON-WARBURTON Curriculum Vitae Chicago Botanic Garden Phone: 847.835.6915 1000 Lake Cook Rd Fax: 847.835.5484 Glencoe IL 60022 [email protected] EDUCATION: Fulbright Postdoctoral Fellow University of California, 1994- Soil and fungal ecology Riverside 1997 Ph.D., Environmental Biology Curtin University of 1994 Dissertation: Soil-plant relationships of Eucalyptus species Technology, Australia in acidic coal mining soils. Adviser: Byron B. Lamont B.S., Biology (Highest Honors) Curtin University of 1989 Minor: Statistics Technology, Australia B.S., Nursing Western Australian School 1984 Clinical specialty: Operating Theater of Nursing APPOINTMENTS: Director and Coordinator, Research Experiences for Chicago Botanic Garden 2004- Undergraduates (REU) site in Plant Conservation and 2010 Biology Adjunct Professor of Biology Northwestern University 2003- present Conservation Scientist, Chicago Botanic Garden 2001- Soil and Microbial Ecology, and present Manager, Soil Sciences Program Assistant Researcher, University of California, 1999- Soil Microbial Ecology Riverside 2001 Post-doctoral Research Fellow, University of Melbourne, 1998- Cell & Molecular Biology, Nanotechnology Australia 1999 TEACHING APPOINTMENTS: Instructor, §Field and Lab Methods in Conservation Northwestern University 2009- Biology (PBC499) present Instructor, §Soils and Environment (PBC448), Northwestern University 2008- Fall quarter present Guest lecturer, Introductory Mycology University of Wisconsin, 2008 Winter quarter Madison 2 Guest lecturer, -
Putting Constraints on the Role of Competition in Limiting Diversity In
Curriculum Vitae - Bryan Latimer Foster Department of Ecology and Evolutionary Biology / Kansas Biological Survey University of Kansas Lawrence, KS 66045 785-864-3346, [email protected] EEB Faculty page: http://www2.ku.edu/~eeb/faculty/foster.shtml Lab Website: http://kbs.ku.edu/people/staff_www/foster/index.htm EDUCATION 1996 Ph.D. Botany and Plant Pathology, Michigan State University. Advisor: Katherine Gross 1992 M.S. Zoology, Michigan State University. Advisor: Katherine Gross 1989 B.S. Range Science, Texas A&M University. Advisor: Fred Smeins PROFFESSIONAL APPOINTMENTS 2012-present Professor, Dept. of Ecology and Evolutionary Biology, University of Kansas 2012-present Senior Scientist, Kansas Biological Survey 2005-2011 Associate Professor, Dept. of Ecology and Evolutionary Biology, University of Kansas 1999-2005 Assistant Professor, Dept. of Ecology and Evolutionary Biology, University of Kansas 1997-1999 Postdoctoral Fellow, Dept. of Ecology, Evolution and Behavior, University of Minnesota. Advisor: David Tilman 1996-1997 Postdoctoral Researcher, Kellogg Biological Station, Michigan State University. Advisor: Katherine Gross, Mike Klug RESEARCH EXPERTISE Community Ecology, Restoration Ecology COURSES TAUGHT Principles of Ecology (BIOL 414) Community and Ecosystems Ecology (BIOL 714) Field and Laboratory Methods in Ecology (BIOL 415) Plant Ecology (BIOL 602) Field and Laboratory Exercises in Plant Ecology (BIOL 607) Biodiversity and Ecosystem Function (BIOL 701 graduate seminar) Species Coexistence and Community Organization (BIOL 701 graduate seminar) Ecological Applications (BIOL 701 graduate seminar) Community Ecology (BIOL 701 graduate seminar) Restoration Ecology (BIOL 701 graduate seminar) EXTERNAL FUNDING 2010-2015. NSF-Population and Community Ecology ($580,362). Plant recruitment, coexistence and community assembly in developing prairie restorations. PI: B.