Determination of Phospholipase Activity of PAF Acetylhydrolase
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The Metabolic Serine Hydrolases and Their Functions in Mammalian Physiology and Disease Jonathan Z
REVIEW pubs.acs.org/CR The Metabolic Serine Hydrolases and Their Functions in Mammalian Physiology and Disease Jonathan Z. Long* and Benjamin F. Cravatt* The Skaggs Institute for Chemical Biology and Department of Chemical Physiology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, United States CONTENTS 2.4. Other Phospholipases 6034 1. Introduction 6023 2.4.1. LIPG (Endothelial Lipase) 6034 2. Small-Molecule Hydrolases 6023 2.4.2. PLA1A (Phosphatidylserine-Specific 2.1. Intracellular Neutral Lipases 6023 PLA1) 6035 2.1.1. LIPE (Hormone-Sensitive Lipase) 6024 2.4.3. LIPH and LIPI (Phosphatidic Acid-Specific 2.1.2. PNPLA2 (Adipose Triglyceride Lipase) 6024 PLA1R and β) 6035 2.1.3. MGLL (Monoacylglycerol Lipase) 6025 2.4.4. PLB1 (Phospholipase B) 6035 2.1.4. DAGLA and DAGLB (Diacylglycerol Lipase 2.4.5. DDHD1 and DDHD2 (DDHD Domain R and β) 6026 Containing 1 and 2) 6035 2.1.5. CES3 (Carboxylesterase 3) 6026 2.4.6. ABHD4 (Alpha/Beta Hydrolase Domain 2.1.6. AADACL1 (Arylacetamide Deacetylase-like 1) 6026 Containing 4) 6036 2.1.7. ABHD6 (Alpha/Beta Hydrolase Domain 2.5. Small-Molecule Amidases 6036 Containing 6) 6027 2.5.1. FAAH and FAAH2 (Fatty Acid Amide 2.1.8. ABHD12 (Alpha/Beta Hydrolase Domain Hydrolase and FAAH2) 6036 Containing 12) 6027 2.5.2. AFMID (Arylformamidase) 6037 2.2. Extracellular Neutral Lipases 6027 2.6. Acyl-CoA Hydrolases 6037 2.2.1. PNLIP (Pancreatic Lipase) 6028 2.6.1. FASN (Fatty Acid Synthase) 6037 2.2.2. PNLIPRP1 and PNLIPR2 (Pancreatic 2.6.2. -
Use of Thiol-Disulfide Equilibria to Measure the Energetics of Assembly of Transmembrane Helices in Phospholipid Bilayers
Use of thiol-disulfide equilibria to measure the energetics of assembly of transmembrane helices in phospholipid bilayers Lidia Cristian, James D. Lear†, and William F. DeGrado† Department of Biochemistry and Biophysics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6059 Communicated by James A. Wells, Sunesis Pharmaceuticals, Inc., South San Francisco, CA, October 17, 2003 (received for review May 25, 2003) Despite significant efforts and promising progress, the under- association in detergent micelles (16). The reversible association standing of membrane protein folding lags behind that of soluble of a transmembrane peptide in micelles was measured by quan- proteins. Insights into the energetics of membrane protein folding titatively assessing the extent of disulfide formation under have been gained from biophysical studies in membrane-mimick- reversible redox conditions with a thiol-disulfide buffer. Here, ing environments (primarily detergent micelles). However, the we describe the application of the disulfide-coupled folding development of techniques for studying the thermodynamics of method to measure the energetics of transmembrane peptide folding in phospholipid bilayers remains a considerable challenge. association in phospholipid bilayers. The 19–46 transmembrane We had previously used thiol-disulfide exchange to study the fragment of the M2 protein from influenza A virus (M2TM19–46) thermodynamics of association of transmembrane ␣-helices in was used as a model membrane protein for this study. M2 is a detergent micelles; here, we extend this methodology to phos- small homotetrameric proton channel, consisting of 97-residue pholipid bilayers. The system for this study is the homotetrameric monomers (17–19). The protein has two cysteine residues at M2 proton channel protein from the influenza A virus. -
C-Reactive Protein Interactions with Cellular Membranes and Supported Lipid Bilayers
University of Denver Digital Commons @ DU Electronic Theses and Dissertations Graduate Studies 1-1-2016 C-Reactive Protein Interactions with Cellular Membranes and Supported Lipid Bilayers Aml Abd Alhamed Alnaas University of Denver Follow this and additional works at: https://digitalcommons.du.edu/etd Part of the Biochemistry Commons, and the Chemistry Commons Recommended Citation Alnaas, Aml Abd Alhamed, "C-Reactive Protein Interactions with Cellular Membranes and Supported Lipid Bilayers" (2016). Electronic Theses and Dissertations. 1222. https://digitalcommons.du.edu/etd/1222 This Dissertation is brought to you for free and open access by the Graduate Studies at Digital Commons @ DU. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Digital Commons @ DU. For more information, please contact [email protected],[email protected]. C-REACTIVE PROTEIN INTERACTIONS WITH CELLULAR MEMBRANES AND SUPPORTED LIPID BILAYERS __________ A Dissertation Presented to the Faculty of Natural Sciences and Mathematics University of Denver __________ In Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy __________ by Aml Abd Alhamed Alnaas November 2016 Advisor: Michelle K. Knowles ©Copyright by Aml Abd Alhamed Alnaas 2016 All Rights Reserved Author: Aml Abd Alhamed Alnaas Title: C-REACTIVE PROTEIN INTERACTIONS WITH CELLULAR MEMBRANES AND SUPPORTED LIPID BILAYERS Advisor: Michelle K. Knowles Degree Date: November 2016 ABSTRACT C-reactive protein (CRP) is a serum protein that binds to damaged membranes and initiates the complement immune response. Different forms of CRP are thought to alter how the body responds to inflammation and the degradation of foreign material. Despite knowing that a modified form of CRP(mCRP) binds to downstream protein binding partners better than the native pentameric form, the role of CRP conformation on lipid binding is yet unknown. -
Structural Basis of Specific Interactions of Lp-PLA 2 with HDL Revealed By
Structural basis of specifi c interactions of Lp-PLA2 with HDL revealed by hydrogen deuterium exchange mass spectrometry 1, † † 2, Jian Cao, * Yuan-Hao Hsu, * Sheng Li, Virgil L. Woods , Jr., and Edward A. Dennis * Departments of Chemistry and Biochemistry and Pharmacology* and Department of Medicine and Biomedical Sciences Graduate Program, † School of Medicine, University of California, San Diego , La Jolla, CA 92093-0601 Abstract Lipoprotein-associated phospholipase A2 (Lp- Human lipoprotein-associated phospholipase A2 (Lp- PLA2 ), specifi cally Group VIIA PLA2 , is a member of the PLA 2 ), also known as plasma platelet activating factor phospholipase A superfamily and is found mainly associ- 2 acetylhydrolase, belongs to the phospholipase A2 super- ated with LDL and HDL in human plasma. Lp-PLA2 is family (designated as Group VIIA PLA ) ( 1 ). Lp-PLA is considered as a risk factor, a potential biomarker, a target 2 2 found mainly associated with lipoproteins in human for therapy in the treatment of cardiovascular disease, and plasma, about 70% with LDL and another 30% with HDL evidence suggests that the level of Lp-PLA2 in plasma is associated with the risk of future cardiovascular and stroke ( 2 ). Lp-PLA2 was fi rst identifi ed as an enzyme that inacti- events. The differential location of the enzyme in LDL/ vates platelet activating factor (PAF) by hydrolyzing the HDL lipoproteins has been suggested to affect Lp-PLA2 acetyl group at the sn -2 position to produce lyso-PAF and function and/or its physiological role and an abnormal dis- acetate ( 3 ). Later, it was found that Lp-PLA2 has compara- tribution of the enzyme may correlate with diseases. -
Differential Dephosphorylation of CTP: Phosphocholine
M BoC | ARTICLE Differential dephosphorylation of CTP:phosphocholine cytidylyltransferase upon translocation to nuclear membranes and lipid droplets Lambert Yuea,§, Michael J. McPheeb,§, Kevin Gonzaleza, Mark Charmanb, Jonghwa Leeb, Jordan Thompsonb, Dirk F. H. Winklerc, Rosemary B. Cornelld, Steven Pelecha,c, and Neale D. Ridgwayb,* aDepartment of Medicine, Division of Neurology, University of British Columbia, Vancouver, BC V6T 2B5, Canada; bDepartment of Pediatrics and Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, NS B3H 4R2, Canada; cKinexus Bioinformatics Corporation, Vancouver, BC V6P 6T3, Canada; dDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada ABSTRACT CTP:phosphocholine cytidylyltransferase-alpha (CCTα) and CCTβ catalyze the rate- Monitoring Editor limiting step in phosphatidylcholine (PC) biosynthesis. CCTα is activated by association of its α- James Olzmann helical M-domain with nuclear membranes, which is negatively regulated by phosphorylation of University of California, Berkeley the adjacent P-domain. To understand how phosphorylation regulates CCT activity, we devel- oped phosphosite-specific antibodies for pS319 and pY359+pS362 at the N- and C-termini of the Received: Jan 8, 2020 P-domain, respectively. Oleate treatment of cultured cells triggered CCTα translocation to the Revised: Mar 6, 2020 nuclear envelope (NE) and nuclear lipid droplets (nLDs) and rapid dephosphorylation of pS319. Accepted: Mar 10, 2020 Removal of oleate led to dissociation of CCTα from the NE and increased phosphorylation of S319. Choline depletion of cells also caused CCTα translocation to the NE and S319 dephos- phorylation. In contrast, Y359 and S362 were constitutively phosphorylated during oleate addi- tion and removal, and CCTα-pY359+pS362 translocated to the NE and nLDs of oleate-treated cells. -
Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in -
Transcriptome Analysis Reveals Upregulation of Bitter Taste Receptors in Severe Asthmatics
ORIGINAL ARTICLE ASTHMA Transcriptome analysis reveals upregulation of bitter taste receptors in severe asthmatics Christina Orsmark-Pietras1,2, Anna James2,3, Jon R. Konradsen2,4,5, Bjo¨rn Nordlund2,4,5, Cilla So¨derha¨ll1,2, Ville Pulkkinen2,3,6,7, Christophe Pedroletti2,5, Kameran Daham2,8,9, Maciek Kupczyk2,3, Barbro Dahle´n2,8,9, Juha Kere1,2,10, Sven-Erik Dahle´n2,3, Gunilla Hedlin2,4,5,11 and Erik Mele´n2,3,4,11 Affiliations: 1Dept of Biosciences and Nutrition at Novum, Karolinska Institute, Stockholm, 2The Centre for Allergy Research at Karolinska Institute, Stockholm, 3Institute of Environmental Medicine, Karolinska Institute, Stockholm, 4Astrid Lindgren Children’s Hospital, Karolinska University Hospital, Stockholm, 5Dept of Women’s and Children’s Health, Karolinska Institute, Stockholm, 8Lung/Allergy Clinic, Karolinska University Hospital Huddinge, Stockholm, 9Dept of Internal Medicine, Karolinska University Hospital Huddinge, Stockholm, and 10Science for Life Laboratory, Karolinska Institute, Stockholm, Sweden. 6Dept of Medical Genetics, Biomedicum Helsinki, University of Helsinki, Helsinki, and 7Folkha¨lsan Institute of Genetics, Helsinki, Finland. 11Both authors contributed equally. Correspondence: S-E. Dahle´n, The National Institute of Environmental Medicine, Karolinska Institutet, SE- 17177 Stockholm, Sweden. E-mail: [email protected] ABSTRACT The causes of severe childhood asthma are poorly understood. Our aim was to define global patterns of gene expression in children with severe therapy-resistant and controlled asthma. White blood cells were isolated and the global transcriptome profile was characterised using the Affymetrix Human Gene ST 1.0 chip in children with severe, therapy-resistant asthma (n517), controlled asthma (n519) and healthy controls (n518). -
Effect of Disulfide Cyclization of Ultrashort Cationic Lipopeptides on Antimicrobial Activity and Cytotoxicity
International Journal of Molecular Sciences Article Effect of Disulfide Cyclization of Ultrashort Cationic Lipopeptides on Antimicrobial Activity and Cytotoxicity Damian Neubauer 1,* , Maciej Ja´skiewicz 1 , Emilia Sikorska 2 , Sylwia Bartoszewska 1, Marta Bauer 1, Małgorzata Kapusta 3 , Magdalena Narajczyk 4 and Wojciech Kamysz 1 1 Department of Inorganic Chemistry, Faculty of Pharmacy, Medical University of Gda´nsk,80-416 Gda´nsk, Poland; [email protected] (M.J.); [email protected] (S.B.); [email protected] (M.B.); [email protected] (W.K.) 2 Department of Organic Chemistry, Faculty of Chemistry, University of Gda´nsk,Wita Stwosza 63, 80-308 Gda´nsk,Poland; [email protected] 3 Department of Plant Cytology and Embryology, Faculty of Biology, University of Gda´nsk,Wita Stwosza 59, 80-308 Gda´nsk,Poland; [email protected] 4 Laboratory of Electron Microscopy, Faculty of Biology, University of Gda´nsk,Wita Stwosza 59, 80-308 Gda´nsk,Poland; [email protected] * Correspondence: [email protected]; Tel.: +48-(58)-349-14-88 Received: 9 August 2020; Accepted: 22 September 2020; Published: 29 September 2020 Abstract: Ultrashort cationic lipopeptides (USCLs) are considered to be a promising class of antimicrobials with high activity against a broad-spectrum of microorganisms. However, the majority of these compounds are characterized by significant toxicity toward human cells, which hinders their potential application. To overcome those limitations, several approaches have been advanced. One of these is disulfide cyclization that has been shown to improve drug-like characteristics of peptides. In this article the effect of disulfide cyclization of the polar head of N-palmitoylated USCLs on in vitro biological activity has been studied. -
Forty Years Since the Structural Elucidation of Platelet-Activating Factor (PAF): Historical, Current, and Future Research Perspectives
molecules Review Forty Years Since the Structural Elucidation of Platelet-Activating Factor (PAF): Historical, Current, and Future Research Perspectives Ronan Lordan 1,2,* , Alexandros Tsoupras 1 , Ioannis Zabetakis 1,2 and Constantinos A. Demopoulos 3 1 Department of Biological Sciences, University of Limerick, V94 T9PX Limerick, Ireland; [email protected] (A.T.); [email protected] (I.Z.) 2 Health Research Institute (HRI), University of Limerick, V94 T9PX Limerick, Ireland 3 Department of Chemistry, National and Kapodistrian University of Athens, Panepistimioupolis, 15771 Athens, Greece; [email protected] * Correspondence: [email protected]; Tel.: +353-61-234-202 Academic Editor: Ferdinando Nicoletti Received: 2 November 2019; Accepted: 2 December 2019; Published: 3 December 2019 Abstract: In the late 1960s, Barbaro and Zvaifler described a substance that caused antigen induced histamine release from rabbit platelets producing antibodies in passive cutaneous anaphylaxis. Henson described a ‘soluble factor’ released from leukocytes that induced vasoactive amine release in platelets. Later observations by Siraganuan and Osler observed the existence of a diluted substance that had the capacity to cause platelet activation. In 1972, the term platelet-activating factor (PAF) was coined by Benveniste, Henson, and Cochrane. The structure of PAF was later elucidated by Demopoulos, Pinckard, and Hanahan in 1979. These studies introduced the research world to PAF, which is now recognised as a potent phospholipid mediator. Since its introduction to the literature, research on PAF has grown due to interest in its vital cell signalling functions and more sinisterly its role as a pro-inflammatory molecule in several chronic diseases including cardiovascular disease and cancer. -
Comparative Analysis of the Domestic Cat Genome Reveals Genetic Signatures Underlying Feline Biology and Domestication
Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication Michael J. Montaguea,1, Gang Lib,1, Barbara Gandolfic, Razib Khand, Bronwen L. Akene, Steven M. J. Searlee, Patrick Minxa, LaDeana W. Hilliera, Daniel C. Koboldta, Brian W. Davisb, Carlos A. Driscollf, Christina S. Barrf, Kevin Blackistonef, Javier Quilezg, Belen Lorente-Galdosg, Tomas Marques-Bonetg,h, Can Alkani, Gregg W. C. Thomasj, Matthew W. Hahnj, Marilyn Menotti-Raymondk, Stephen J. O’Brienl,m, Richard K. Wilsona, Leslie A. Lyonsc,2, William J. Murphyb,2, and Wesley C. Warrena,2 aThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108; bDepartment of Veterinary Integrative Biosciences, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843; cDepartment of Veterinary Medicine & Surgery, College of Veterinary Medicine, University of Missouri, Columbia, MO 65201; dPopulation Health & Reproduction, School of Veterinary Medicine, University of California, Davis, CA 95616; eWellcome Trust Sanger Institute, Hinxton CB10 1SA, United Kingdom; fNational Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Bethesda, MD 20886; gCatalan Institution for Research and Advanced Studies, Institute of Evolutionary Biology, Pompeu Fabra University, 08003 Barcelona, Spain; hCentro de Analisis Genomico 08028, Barcelona, Spain; iDepartment of Computer Engineering, Bilkent University, Ankara 06800, Turkey; jDepartment of Biology, Indiana University, Bloomington, -
Unique Modifications with Phosphocholine and Phosphoethanolamine Define Alternate Antigenic Forms of Neisseria Gonorrhoeae Type IV Pili
Unique modifications with phosphocholine and phosphoethanolamine define alternate antigenic forms of Neisseria gonorrhoeae type IV pili Finn Terje Hegge*†‡§, Paul G. Hitchen§¶, Finn Erik Aas*†‡, Heidi Kristiansen*‡, Cecilia Løvold*†‡, Wolfgang Egge-Jacobsen‡, Maria Panico¶, Weng Yee Leong¶, Victoria Bullʈ, Mumtaz Virjiʈ, Howard R. Morris¶**, Anne Dell¶, and Michael Koomey*†‡†† *Centre for Molecular Biology and Neuroscience, †Department of Molecular Biosciences, and ‡Biotechnology Centre of Oslo, University of Oslo, 0316 Oslo, Norway; ¶Department of Biological Sciences, Imperial College London, London SW7 2AY, United Kingdom; ʈDepartment of Pathology and Microbiology, University of Bristol, Bristol BS8 1TD, United Kingdom; and **M-Scan Mass Spectrometry Research and Training Centre, Silwood Park, Ascot SL5 7PZ, United Kingdom Edited by John J. Mekalanos, Harvard Medical School, Boston, MA, and approved May 11, 2004 (received for review April 5, 2004) Several major bacterial pathogens and related commensal species The importance of neisserial Tfp in host interaction and colonizing the human mucosa express phosphocholine (PC) at their disease pathogenesis is attested to by the notorious capacity of cell surfaces. PC appears to impact host–microbe biology by serving the PilE pilin subunit to undergo antigenic variation (8). Post- as a ligand for both C-reactive protein and the receptor for translational modifications provide additional sources for PilE platelet-activating factor. Type IV pili of Neisseria gonorrhoeae structural and functional diversity. In addition to proteolytic (Ng) and Neisseria meningitidis, filamentous protein structures processing and methylation of the N-terminal residue by PilD critical to the colonization of their human hosts, are known to react (9), three distinct posttranslational modifications have been variably with monoclonal antibodies recognizing a PC epitope. -
Enhanced Phosphocholine Metabolism Is Essential for Terminal Erythropoiesis
Enhanced phosphocholine metabolism is essential for terminal erythropoiesis The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Huang, Nai-Jia et al. “Enhanced phosphocholine metabolism is essential for terminal erythropoiesis.” Blood 131 (2018): 2955-2966 © 2018 The Author(s) As Published 10.1182/BLOOD-2018-03-838516 Publisher American Society of Hematology Version Author's final manuscript Citable link https://hdl.handle.net/1721.1/125205 Terms of Use Creative Commons Attribution-Noncommercial-Share Alike Detailed Terms http://creativecommons.org/licenses/by-nc-sa/4.0/ From www.bloodjournal.org by guest on May 1, 2018. For personal use only. Blood First Edition Paper, prepublished online April 30, 2018; DOI 10.1182/blood-2018-03-838516 Enhanced phosphocholine metabolism is essential for terminal erythropoiesis Nai-Jia Huang1, Ying-Cing Lin2, Chung-Yueh Lin1,4, Novalia Pishesha1,3, Caroline A. Lewis1, Elizaveta Freinkman1, Colin Farquharson5, José Luis Millán6, Harvey Lodish*,1,3,4 1 Whitehead Institute for Biomedical Research, Cambridge, Massachusetts 02142, USA. 2Ragon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA 3 Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA 4Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA 5The Roslin Institute, University of Edinburgh, Easter Bush EH25 9RG, United Kingdom 6Sanford Children’s Health Research Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA * Corresponding author, Email address: [email protected] PHOSPHO1 regulates phosphocholine metabolism, ATP production, and amino acid supply during erythropoiesis 1 Copyright © 2018 American Society of Hematology From www.bloodjournal.org by guest on May 1, 2018.