New Insights Into the Mechanisms of Pyroptosis and Implications for Diabetic Kidney Disease
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NOD-Like Receptors in the Eye: Uncovering Its Role in Diabetic Retinopathy
International Journal of Molecular Sciences Review NOD-like Receptors in the Eye: Uncovering Its Role in Diabetic Retinopathy Rayne R. Lim 1,2,3, Margaret E. Wieser 1, Rama R. Ganga 4, Veluchamy A. Barathi 5, Rajamani Lakshminarayanan 5 , Rajiv R. Mohan 1,2,3,6, Dean P. Hainsworth 6 and Shyam S. Chaurasia 1,2,3,* 1 Ocular Immunology and Angiogenesis Lab, University of Missouri, Columbia, MO 652011, USA; [email protected] (R.R.L.); [email protected] (M.E.W.); [email protected] (R.R.M.) 2 Department of Biomedical Sciences, University of Missouri, Columbia, MO 652011, USA 3 Ophthalmology, Harry S. Truman Memorial Veterans’ Hospital, Columbia, MO 652011, USA 4 Surgery, University of Missouri, Columbia, MO 652011, USA; [email protected] 5 Singapore Eye Research Institute, Singapore 169856, Singapore; [email protected] (V.A.B.); [email protected] (R.L.) 6 Mason Eye Institute, School of Medicine, University of Missouri, Columbia, MO 652011, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-573-882-3207 Received: 9 December 2019; Accepted: 27 January 2020; Published: 30 January 2020 Abstract: Diabetic retinopathy (DR) is an ocular complication of diabetes mellitus (DM). International Diabetic Federations (IDF) estimates up to 629 million people with DM by the year 2045 worldwide. Nearly 50% of DM patients will show evidence of diabetic-related eye problems. Therapeutic interventions for DR are limited and mostly involve surgical intervention at the late-stages of the disease. The lack of early-stage diagnostic tools and therapies, especially in DR, demands a better understanding of the biological processes involved in the etiology of disease progression. -
ATP-Binding and Hydrolysis in Inflammasome Activation
molecules Review ATP-Binding and Hydrolysis in Inflammasome Activation Christina F. Sandall, Bjoern K. Ziehr and Justin A. MacDonald * Department of Biochemistry & Molecular Biology, Cumming School of Medicine, University of Calgary, 3280 Hospital Drive NW, Calgary, AB T2N 4Z6, Canada; [email protected] (C.F.S.); [email protected] (B.K.Z.) * Correspondence: [email protected]; Tel.: +1-403-210-8433 Academic Editor: Massimo Bertinaria Received: 15 September 2020; Accepted: 3 October 2020; Published: 7 October 2020 Abstract: The prototypical model for NOD-like receptor (NLR) inflammasome assembly includes nucleotide-dependent activation of the NLR downstream of pathogen- or danger-associated molecular pattern (PAMP or DAMP) recognition, followed by nucleation of hetero-oligomeric platforms that lie upstream of inflammatory responses associated with innate immunity. As members of the STAND ATPases, the NLRs are generally thought to share a similar model of ATP-dependent activation and effect. However, recent observations have challenged this paradigm to reveal novel and complex biochemical processes to discern NLRs from other STAND proteins. In this review, we highlight past findings that identify the regulatory importance of conserved ATP-binding and hydrolysis motifs within the nucleotide-binding NACHT domain of NLRs and explore recent breakthroughs that generate connections between NLR protein structure and function. Indeed, newly deposited NLR structures for NLRC4 and NLRP3 have provided unique perspectives on the ATP-dependency of inflammasome activation. Novel molecular dynamic simulations of NLRP3 examined the active site of ADP- and ATP-bound models. The findings support distinctions in nucleotide-binding domain topology with occupancy of ATP or ADP that are in turn disseminated on to the global protein structure. -
Inflammasome Activation and Regulation
Zheng et al. Cell Discovery (2020) 6:36 Cell Discovery https://doi.org/10.1038/s41421-020-0167-x www.nature.com/celldisc REVIEW ARTICLE Open Access Inflammasome activation and regulation: toward a better understanding of complex mechanisms Danping Zheng1,2,TimurLiwinski1,3 and Eran Elinav 1,4 Abstract Inflammasomes are cytoplasmic multiprotein complexes comprising a sensor protein, inflammatory caspases, and in some but not all cases an adapter protein connecting the two. They can be activated by a repertoire of endogenous and exogenous stimuli, leading to enzymatic activation of canonical caspase-1, noncanonical caspase-11 (or the equivalent caspase-4 and caspase-5 in humans) or caspase-8, resulting in secretion of IL-1β and IL-18, as well as apoptotic and pyroptotic cell death. Appropriate inflammasome activation is vital for the host to cope with foreign pathogens or tissue damage, while aberrant inflammasome activation can cause uncontrolled tissue responses that may contribute to various diseases, including autoinflammatory disorders, cardiometabolic diseases, cancer and neurodegenerative diseases. Therefore, it is imperative to maintain a fine balance between inflammasome activation and inhibition, which requires a fine-tuned regulation of inflammasome assembly and effector function. Recently, a growing body of studies have been focusing on delineating the structural and molecular mechanisms underlying the regulation of inflammasome signaling. In the present review, we summarize the most recent advances and remaining challenges in understanding the ordered inflammasome assembly and activation upon sensing of diverse stimuli, as well as the tight regulations of these processes. Furthermore, we review recent progress and challenges in translating inflammasome research into therapeutic tools, aimed at modifying inflammasome-regulated human diseases. -
Gasdermin D: the Long-Awaited Executioner of Pyroptosis Cell Research (2015) 25:1183-1184
Cell Research (2015) 25:1183-1184. npg © 2015 IBCB, SIBS, CAS All rights reserved 1001-0602/15 $ 32.00 RESEARCH HIGHLIGHT www.nature.com/cr Gasdermin D: the long-awaited executioner of pyroptosis Cell Research (2015) 25:1183-1184. doi:10.1038/cr.2015.124; published online 20 October 2015 Inflammatory caspases drive a screen for mutations that would impair cell membrane that mediates release of lytic form of cell death called pyropto- activation of the caspase-11-dependent matured IL-1β from the cell. sis in response to microbial infection pathway. Through this screen, the au- To further dissect how gasdermin and endogenous damage-associated thors found that peritoneal macrophages D might contribute to the caspase- signals. Two studies now demonstrate harvested from a mouse strain harboring 11-dependent pathway, both groups that cleavage of the substrate gas- a mutation in the gene encoding gasder- performed a series of biochemical as- dermin D by inflammatory caspases min D, called GsdmdI105N/I105N (owing to says to demonstrate that recombinant necessitates eventual pyroptotic de- an isoleucine-to-asparagine substitu- caspase-11 cleaved gasdermin D be- mise of a cell. tion mutation at position 105), did not tween the Asp276 and Gly277 residues Inflammatory caspases, including undergo pyroptosis and release IL-1β of mouse gasdermin D, generating an N- caspase-1, -4, -5 and -11, are crucial in response to LPS transfection. On the terminal (30-31-kDa) and a C-terminal mediators of inflammation and cell other hand, Shao and colleagues utilized fragment (22-kDa). Caspase-4 or -5 also death. -
AIM2 and NLRC4 Inflammasomes Contribute with ASC to Acute Brain Injury Independently of NLRP3
AIM2 and NLRC4 inflammasomes contribute with ASC to acute brain injury independently of NLRP3 Adam Denesa,b,1, Graham Couttsb, Nikolett Lénárta, Sheena M. Cruickshankb, Pablo Pelegrinb,c, Joanne Skinnerb, Nancy Rothwellb, Stuart M. Allanb, and David Broughb,1 aLaboratory of Molecular Neuroendocrinology, Institute of Experimental Medicine, Budapest, 1083, Hungary; bFaculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom; and cInflammation and Experimental Surgery Unit, CIBERehd (Centro de Investigación Biomédica en Red en el Área temática de Enfermedades Hepáticas y Digestivas), Murcia Biohealth Research Institute–Arrixaca, University Hospital Virgen de la Arrixaca, 30120 Murcia, Spain Edited by Vishva M. Dixit, Genentech, San Francisco, CA, and approved February 19, 2015 (received for review November 18, 2014) Inflammation that contributes to acute cerebrovascular disease is or DAMPs, it recruits ASC, which in turn recruits caspase-1, driven by the proinflammatory cytokine interleukin-1 and is known causing its activation. Caspase-1 then processes pro–IL-1β to a to exacerbate resulting injury. The activity of interleukin-1 is regu- mature form that is rapidly secreted from the cell (5). The ac- lated by multimolecular protein complexes called inflammasomes. tivation of caspase-1 can also cause cell death (6). There are multiple potential inflammasomes activated in diverse A number of inflammasome-forming PRRs have been iden- diseases, yet the nature of the inflammasomes involved in brain tified, including NLR family, pyrin domain containing 1 (NLRP1); injury is currently unknown. Here, using a rodent model of stroke, NLRP3; NLRP6; NLRP7; NLRP12; NLR family, CARD domain we show that the NLRC4 (NLR family, CARD domain containing 4) containing 4 (NLRC4); AIM 2 (absent in melanoma 2); IFI16; and AIM2 (absent in melanoma 2) inflammasomes contribute to and RIG-I (5). -
Complementary Regulation of Caspase-1 and IL-1Β Reveals Additional Mechanisms of Dampened Inflammation in Bats
Complementary regulation of caspase-1 and IL-1β reveals additional mechanisms of dampened inflammation in bats Geraldine Goha,1, Matae Ahna,1, Feng Zhua, Lim Beng Leea, Dahai Luob,c, Aaron T. Irvinga,d,2, and Lin-Fa Wanga,e,2 aProgramme in Emerging Infectious Diseases, Duke–National University of Singapore Medical School, 169857, Singapore; bLee Kong Chian School of Medicine, Nanyang Technological University, 636921, Singapore; cNTU Institute of Structural Biology, Nanyang Technological University, 636921, Singapore; dZhejiang University–University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University International Campus, Haining, 314400, China; and eSinghealth Duke–NUS Global Health Institute, 169857, Singapore Edited by Vishva M. Dixit, Genentech, San Francisco, CA, and approved September 14, 2020 (received for review February 21, 2020) Bats have emerged as unique mammalian vectors harboring a experimental confirmation is rare. We recently demonstrated diverse range of highly lethal zoonotic viruses with minimal that NLRP3 is dampened in bats as a result of loss-of-function clinical disease. Despite having sustained complete genomic loss bat-specific isoforms and impaired transcriptional priming (9). of AIM2, regulation of the downstream inflammasome response in The stimulator of IFN genes (STING), a key adaptor to the bats is unknown. AIM2 sensing of cytoplasmic DNA triggers ASC DNA-sensing cGAS protein, is also exclusively mutated at S358 aggregation and recruits caspase-1, the central inflammasome ef- in bats, resulting in a reduced IFN response to HSV1 (10). We fector enzyme, triggering cleavage of cytokines such as IL-1β and previously reported a complete absence of Absent in melanoma inducing GSDMD-mediated pyroptotic cell death. -
1 Beyond Autoantibodies: Biological Roles of Human Autoreactive B Cells in Rheumatoid Arthritis Revealed by Whole Transcriptome
bioRxiv preprint doi: https://doi.org/10.1101/144121; this version posted June 1, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Beyond autoantibodies: Biological roles of human autoreactive B cells in rheumatoid arthritis revealed by whole transcriptome profiling. Ankit Mahendra1, Xingyu Yang2, Shaza Abnouf1, Daechan Park3, Sanam Soomro4, Jay RT Adolacion1, Jason Roszik5, Cristian Coarfa6, Gabrielle Romain1, Keith Wanzeck7, S. Louis Bridges Jr.7, Amita Aggarwal8, Peng Qiu2, Sandeep Krishna Agarwal9, Chandra Mohan4, Navin Varadarajan1 Author affiliations 1. Department of Chemical & Biomolecular Engineering, University of Houston, Houston, TX 2. Department of Biomedical Engineering, Georgia Institute of Technology, Atlanta, Georgia 3. Center for Theragnosis, Biomedical Research Institute, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea 4. Department of Biomedical Engineering, University of Houston, Houston, TX 5. Department of Melanoma Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, TX 6. Department of Molecular and Cell Biology, Baylor College of Medicine, Houston, TX 7. Division of Clinical Immunology & Rheumatology, University of Alabama at Birmingham, Birmingham, AL 8. Department of Clinical Immunology, Sanjay Gandhi Postgraduate Institute of Medical Sciences, Lucknow, India 9. Section of Immunology, Allergy and Immunology, Department of Medicine, Baylor College of Medicine, Houston, TX Address for correspondence: Dr. Navin Varadarajan ([email protected]) 1 bioRxiv preprint doi: https://doi.org/10.1101/144121; this version posted June 1, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. -
NOD-Like Receptors (Nlrs) and Inflammasomes
International Edition www.adipogen.com NOD-like Receptors (NLRs) and Inflammasomes In mammals, germ-line encoded pattern recognition receptors (PRRs) detect the presence of pathogens through recognition of pathogen-associated molecular patterns (PAMPs) or endogenous danger signals through the sensing of danger-associated molecular patterns (DAMPs). The innate immune system comprises several classes of PRRs that allow the early detection of pathogens at the site of infection. The membrane-bound toll-like receptors (TLRs) and C-type lectin receptors (CTRs) detect PAMPs in extracellular milieu and endo- somal compartments. TRLs and CTRs cooperate with PRRs sensing the presence of cytosolic nucleic acids, like RNA-sensing RIG-I (retinoic acid-inducible gene I)-like receptors (RLRs; RLHs) or DNA-sensing AIM2, among others. Another set of intracellular sensing PRRs are the NOD-like receptors (NLRs; nucleotide-binding domain leucine-rich repeat containing receptors), which not only recognize PAMPs but also DAMPs. PAMPs FUNGI/PROTOZOA BACTERIA VIRUSES MOLECULES C. albicans A. hydrophila Adenovirus Bacillus anthracis lethal Plasmodium B. brevis Encephalomyo- toxin (LeTx) S. cerevisiae E. coli carditis virus Bacterial pore-forming L. monocytogenes Herpes simplex virus toxins L. pneumophila Influenza virus Cytosolic dsDNA N. gonorrhoeae Sendai virus P. aeruginosa Cytosolic flagellin S. aureus MDP S. flexneri meso-DAP S. hygroscopicus S. typhimurium DAMPs MOLECULES PARTICLES OTHERS DNA Uric acid UVB Extracellular ATP CPPD Mutations R837 Asbestos Cytosolic dsDNA Irritants Silica Glucose Alum Hyaluronan Amyloid-b Hemozoin Nanoparticles FIGURE 1: Overview on PAMPs and DAMPs recognized by NLRs. NOD-like Receptors [NLRs] The intracellular NLRs organize signaling complexes such as inflammasomes and NOD signalosomes. -
Mechanisms and Therapeutic Regulation of Pyroptosis in Inflammatory Diseases and Cancer
International Journal of Molecular Sciences Review Mechanisms and Therapeutic Regulation of Pyroptosis in Inflammatory Diseases and Cancer Zhaodi Zheng and Guorong Li * Shandong Provincial Key Laboratory of Animal Resistant, School of Life Sciences, Shandong Normal University, Jinan 250014, China; [email protected] * Correspondence: [email protected]; Tel.: +86-531-8618-2690 Received: 24 January 2020; Accepted: 17 February 2020; Published: 20 February 2020 Abstract: Programmed Cell Death (PCD) is considered to be a pathological form of cell death when mediated by an intracellular program and it balances cell death with survival of normal cells. Pyroptosis, a type of PCD, is induced by the inflammatory caspase cleavage of gasdermin D (GSDMD) and apoptotic caspase cleavage of gasdermin E (GSDME). This review aims to summarize the latest molecular mechanisms about pyroptosis mediated by pore-forming GSDMD and GSDME proteins that permeabilize plasma and mitochondrial membrane activating pyroptosis and apoptosis. We also discuss the potentiality of pyroptosis as a therapeutic target in human diseases. Blockade of pyroptosis by compounds can treat inflammatory disease and pyroptosis activation contributes to cancer therapy. Keywords: pyroptosis; GSDMD; GSDME; inflammatory disease; cancer therapy 1. Introduction Many disease states are cross-linked with cell death. The Nomenclature Committee on Cell Death make a series of recommendations to systematically classify cell death [1,2]. Programmed Cell Death (PCD) is mediated by specific cellular mechanisms and some signaling pathways are activated in these processes [3]. Apoptosis, autophagy and programmed necrosis are the three main types of PCD [4], and they may jointly determine the fate of malignant tumor cells. -
NLRP12/Monarch-1 Suppression of the NLR Gene Blimp-1/PRDM1
Blimp-1/PRDM1 Mediates Transcriptional Suppression of the NLR Gene NLRP12/Monarch-1 This information is current as Christopher A. Lord, David Savitsky, Raquel Sitcheran, of September 29, 2021. Kathryn Calame, Jo Rae Wright, Jenny Pan-Yun Ting and Kristi L. Williams J Immunol 2009; 182:2948-2958; ; doi: 10.4049/jimmunol.0801692 http://www.jimmunol.org/content/182/5/2948 Downloaded from References This article cites 78 articles, 29 of which you can access for free at: http://www.jimmunol.org/content/182/5/2948.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on September 29, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2009 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Blimp-1/PRDM1 Mediates Transcriptional Suppression of the NLR Gene NLRP12/Monarch-11 Christopher A. Lord,* David Savitsky,2§ Raquel Sitcheran,‡ Kathryn Calame,§ Jo Rae Wright,* Jenny Pan-Yun Ting,‡ and Kristi L. -
NOD2: Activation During Bacterial and Viral Infections, Polymorphisms
REVISTA DE INVESTIGACIÓN CLÍNICA Contents available at PubMed www.clinicalandtranslationalinvestigation.com PERMANYER Rev Inves Clin. 2018;70:18-28 IN-DEPTH REVIEW NOD2: Activation During Bacterial and Viral Infections, Polymorphisms and Potential as Therapeutic Target Diana Alhelí Domínguez-Martínez1, Daniel Núñez-Avellaneda1, Carlos Alberto Castañón-Sánchez2 and Ma Isabel Salazar3* 1Laboratorio de Inmunología Celular e Inmunopatogénesis, Departamento de Inmunología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City; 2Subdirección de Enseñanza e Investigación, Hospital Regional de Alta Especialidad de Oaxaca, San Bartolo Coyotepec, Oax.; 3Sección de Inmunovirología, Laboratorio de Virología, Departamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, Mexico ABSTRACT Nucleotide-binding domain (NBD) leucine-rich repeat (LRR)-containing receptors or NLRs are a family of receptors that detect both, molecules associated to pathogens and alarmins, and are located mainly in the cytoplasm. NOD2 belongs to the NLR family and is a dynamic receptor capable of interacting with multiple proteins and modulate immune responses in a stimuli-dependent manner. The experimental evidence shows that interaction between NOD2 structural domains and the effector proteins shape the overall response against bacterial or viral infections. Other reports have focused on the importance of NOD2 not only in infection but also in maintaining tissue homeostasis. However, not only protein interactions relate to function but also certain polymorphisms in the gene that encodes NOD2 have been associated with inflammatory diseases, such as Crohn’s disease. Here, we review the importance and general characteristics of NOD2, discussing its participation in infections caused by bacteria and viruses as well as its interaction with other pathogen recognition receptors or effectors to induce antibacterial and antiviral responses. -
Elucidation of the Functional Consequences of NLRP7 Mutations
Elucidation of the functional consequences of NLRP7 mutations By: Ebtihaj Bukhari Department of Human Genetics McGill University, Montreal July 2009 A thesis submitted to McGill University in partial fulfillment of the requirement of the Master of Science degree in Human Genetics © Ebtihaj Bukhari, 2009 TABLE OF CONTENTS ABSTRACT............................................................................................................................... 4 RÉSUMÉ ................................................................................................................................... 5 LIST OF ABBREVIATIONS .................................................................................................. 6 LIST OF FIGURES AND TABLES ....................................................................................... 7 ACKNOWLEDGEMENTS ..................................................................................................... 8 CHAPTER 1.............................................................................................................................. 9 1.1 Introduction and Clinical Manifestations of Hydatidiform Moles .............................. 9 1.1.2 Epidemiology of Hydatidiform Moles....................................................................... 10 1.1.3 Karyotype and Genotype of Moles............................................................................ 11 1.1.4 Imprinting and DNA Methylation in Moles .............................................................. 12 1.2 Identification