A Short Guide to Electrophysiology and Ion Channels
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Glossary - Cellbiology
1 Glossary - Cellbiology Blotting: (Blot Analysis) Widely used biochemical technique for detecting the presence of specific macromolecules (proteins, mRNAs, or DNA sequences) in a mixture. A sample first is separated on an agarose or polyacrylamide gel usually under denaturing conditions; the separated components are transferred (blotting) to a nitrocellulose sheet, which is exposed to a radiolabeled molecule that specifically binds to the macromolecule of interest, and then subjected to autoradiography. Northern B.: mRNAs are detected with a complementary DNA; Southern B.: DNA restriction fragments are detected with complementary nucleotide sequences; Western B.: Proteins are detected by specific antibodies. Cell: The fundamental unit of living organisms. Cells are bounded by a lipid-containing plasma membrane, containing the central nucleus, and the cytoplasm. Cells are generally capable of independent reproduction. More complex cells like Eukaryotes have various compartments (organelles) where special tasks essential for the survival of the cell take place. Cytoplasm: Viscous contents of a cell that are contained within the plasma membrane but, in eukaryotic cells, outside the nucleus. The part of the cytoplasm not contained in any organelle is called the Cytosol. Cytoskeleton: (Gk. ) Three dimensional network of fibrous elements, allowing precisely regulated movements of cell parts, transport organelles, and help to maintain a cell’s shape. • Actin filament: (Microfilaments) Ubiquitous eukaryotic cytoskeletal proteins (one end is attached to the cell-cortex) of two “twisted“ actin monomers; are important in the structural support and movement of cells. Each actin filament (F-actin) consists of two strands of globular subunits (G-Actin) wrapped around each other to form a polarized unit (high ionic cytoplasm lead to the formation of AF, whereas low ion-concentration disassembles AF). -
Biopsychology 2012 – Sec 003 (Dr
Biopsychology 2012 – sec 003 (Dr. Campeau) Study Guide for First Midterm What are some fun facts about the human brain? - there are approximately 100 billion neurons in the brain; - each neuron makes between 1000 to 10000 connections with other neurons; - speed of action potentials varies from less than 1 mph and up to 100 mph. What is a neuron? A very specialized cell type whose function is to receive, process, and send information; these cells are found in the central nervous system (CNS – brain, spinal cord, retina) and the peripheral nervous system (PNS – the rest of the body). What is a nerve? They are axons of individual neurons in bundles or strands of many axons. What are the major parts of a neuron? - cell membrane: “skin” of the neuron; - cytoplasm: everything inside the skin; - nucleus: contains chromosomes (DNA); - ribosomes: generate proteins from mRNA; - mitochondria: energy “generator” of cells (produce ATP); - mitochondria: moves “stuff” inside the neuron (like a tow rope); - soma: cell body, excluding dendrites and axons; - dendrites and spines: part of the neuron usually receiving information from other neurons; - axons: part of the neuron that transmits information to other neurons; - myelin sheath: surrounds axons and provides electrical “insulation”; - nodes of Ranvier: small area on axons devoid of myelin sheath; - presynaptic terminal: area of neuron where neurotransmitter is stored and released by action potentials. What are the different neuron types according to function? 1. Sensory neurons: neurons specialized to “receive” information about the environment. 2. Motor neurons: neurons specialized to produce movement (contraction of muscles). 3. Interneurons or Intrinsic neurons: neurons, usually with short axons, that handle local information. -
Electrophysiology-Appnote.Pdf
Application Note: Electrophysiology Electrophysiology Introduction Electrophysiology is a field of research that deals with the electrical properties of cells and biological tissues. In some cases, it is used to test for nervous or cardiac diseases and abnormalities. In many research applications probes are used to measure the electrical activity of individual cells, tissues, and whole specimens. Measuring the activity of cells at various membrane potentials can give valuable information about ion transport mechanisms and cellular communication. Varying ionic strength and membrane potential on cell populations can be used to study contractile movements of muscle cells, and diseases affecting the normal propagation of impulses. Using various stimulation techniques along with a selection of quality equipment and setup design can give rise to a wealth of applications in electrophysiology. Electrophysiology Principle Researchers and clinicians use electrophysiology when studying the electrical properties of neural and muscle tissue. In the clinical laboratory, electroencephalograms are routinely performed as a test for neural disorders like epilepsy, brain tumor, stroke, encephalitis, and others by measuring the electrical activity of the brain through external electrodes. In the research laboratory, electrophysiology methods are used to measure the ion-channel activity of cell membranes in various electrical environments. Here, an extremely thin micropipette is used to make intimate contact with the cell membrane to study membrane potential. Neurons and other cell types derive their electrical properties from their lipid bilayer and the ion concentrations inside and outside of the cell. The ion concentration differences create a membrane potential difference on either side of the membrane. The flow of ions across the membrane generates a current that can be measured using Ohm’s law, where the change in voltage (V) is related to the current (I) and membrane resistance (R). -
The Role of Transient Receptor Potential Cation Channels in Ca2þ Signaling
Downloaded from http://cshperspectives.cshlp.org/ on October 7, 2021 - Published by Cold Spring Harbor Laboratory Press The Role of Transient Receptor Potential Cation Channels in Ca2þ Signaling Maarten Gees, Barbara Colsoul, and Bernd Nilius KU Leuven, Department of Molecular Cell Biology, Laboratory Ion Channel Research, Campus Gasthuisberg, Herestraat 49, bus 802, Leuven, Belgium Correspondence: [email protected] The 28 mammalian members of the super-family of transient receptor potential (TRP) channels are cation channels, mostly permeable to both monovalent and divalent cations, and can be subdivided into six main subfamilies: the TRPC (canonical), TRPV (vanilloid), TRPM (melastatin), TRPP (polycystin), TRPML (mucolipin), and the TRPA (ankyrin) groups. TRP channels are widely expressed in a large number of different tissues and cell types, and their biological roles appear to be equally diverse. In general, considered as poly- modal cell sensors, they play a much more diverse role than anticipated. Functionally, TRP channels, when activated, cause cell depolarization, which may trigger a plethora of voltage-dependent ion channels. Upon stimulation, Ca2þ permeable TRP channels 2þ 2þ 2þ generate changes in the intracellular Ca concentration, [Ca ]i,byCa entry via the plasma membrane. However, more and more evidence is arising that TRP channels are also located in intracellular organelles and serve as intracellular Ca2þ release channels. This review focuses on three major tasks of TRP channels: (1) the function of TRP channels as Ca2þ entry channels; (2) the electrogenic actions of TRPs; and (3) TRPs as Ca2þ release channels in intracellular organelles. ransient receptor potential (TRP) channels choanoflagellates, yeast, and fungi are primary Tconstitute a large and functionally versatile chemo-, thermo-, or mechanosensors (Cai 2008; family of cation-conducting channel proteins, Wheeler and Brownlee 2008; Chang et al. -
A Comparison of the Performance and Application Differences Between Manual and Automated Patch-Clamp Techniques
Send Orders of Reprints at [email protected] Current Chemical Genomics, 2012, 6, 87-92 87 Open Access A Comparison of the Performance and Application Differences Between Manual and Automated Patch-Clamp Techniques Xiao Yajuan, Liang Xin and Li Zhiyuan* Key Laboratory of Regenerative Biology, Guangzhou Institute of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou 510530, China Abstract: The patch clamp technique is commonly used in electrophysiological experiments and offers direct insight into ion channel properties through the characterization of ion channel activity. This technique can be used to elucidate the in- teraction between a drug and a specific ion channel at different conformational states to understand the ion channel modu- lators’ mechanisms. The patch clamp technique is regarded as a gold standard for ion channel research; however, it suffers from low throughput and high personnel costs. In the last decade, the development of several automated electrophysiology platforms has greatly increased the screen throughput of whole cell electrophysiological recordings. New advancements in the automated patch clamp systems have aimed to provide high data quality, high content, and high throughput. However, due to the limitations noted above, automated patch clamp systems are not capable of replacing manual patch clamp sys- tems in ion channel research. While automated patch clamp systems are useful for screening large amounts of compounds in cell lines that stably express high levels of ion channels, the manual patch clamp technique is still necessary for study- ing ion channel properties in some research areas and for specific cell types, including primary cells that have mixed cell types and differentiated cells that derive from induced pluripotent stem cells (iPSCs) or embryonic stem cells (ESCs). -
Brain Slice Preparation in Electrophysiology
Brain Slice Preparation In structural integrity, unlike cell cultures or tissue homogenates. Electrophysiology Some of the limitations of these preparations are: 1) lack of certain inputs and outputs normally existing in the Avital Schurr, Ph.D. intact brain; 2) certain portions of the sliced tissue, Department of Anesthesiology, especially the top and bottom surfaces of the slice, are University of Louisville School of Medicine, damaged by the slicing action itself; 3) the life span of a Louisville, Kentucky 40292 brain slice is limited and the tissue gets "older" at a much faster rate than the whole animal; 4) the effects of Avital Schurr is currently an Associate Professor in the decapitation ischemia on the viability of the slice are not Department of Anesthesiology at the University of well understood; 5) Since blood-borne factors may be Louisville. He received his Ph.D. in 1977 from Ben- missing from the artificial bathing medium of the brain Gurion University in Beer Sheva, Israel. From 1977 slice, they cannot benefit the preparation and thus the through 1981, he held two postdoctoral positions, one optimal composition of the bathing solution is not yet at the Baylor College of Medicine and the second at established. the University of Texas Medical School at Houston. Brain slice preparations are becoming PREPARATION OF SLICES increasingly popular among neurobiologists for the In general, rodents are the animals of choice for the study of the mammalian central nervous system preparation of brain slices. Of those, the rat and the guinea pig are the most used. After decapitation, the (CNS) in general and synaptic phenomena in brain is removed rapidly from the skull and rinsed with particular. -
Chapter Four – TRPA1 Channels: Chemical and Temperature Sensitivity
CHAPTER FOUR TRPA1 Channels: Chemical and Temperature Sensitivity Willem J. Laursen1,2, Sviatoslav N. Bagriantsev1,* and Elena O. Gracheva1,2,* 1Department of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, CT, USA 2Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT, USA *Corresponding author: E-mail: [email protected], [email protected] Contents 1. Introduction 90 2. Activation and Regulation of TRPA1 by Chemical Compounds 91 2.1 Chemical activation of TRPA1 by covalent modification 91 2.2 Noncovalent activation of TRPA1 97 2.3 Receptor-operated activation of TRPA1 99 3. Temperature Sensitivity of TRPA1 101 3.1 TRPA1 in mammals 101 3.2 TRPA1 in insects and worms 103 3.3 TRPA1 in fish, birds, reptiles, and amphibians 103 3.4 TRPA1: Molecular mechanism of temperature sensitivity 104 Acknowledgments 107 References 107 Abstract Transient receptor potential ankyrin 1 (TRPA1) is a polymodal excitatory ion channel found in sensory neurons of different organisms, ranging from worms to humans. Since its discovery as an uncharacterized transmembrane protein in human fibroblasts, TRPA1 has become one of the most intensively studied ion channels. Its function has been linked to regulation of heat and cold perception, mechanosensitivity, hearing, inflam- mation, pain, circadian rhythms, chemoreception, and other processes. Some of these proposed functions remain controversial, while others have gathered considerable experimental support. A truly polymodal ion channel, TRPA1 is activated by various stimuli, including electrophilic chemicals, oxygen, temperature, and mechanical force, yet the molecular mechanism of TRPA1 gating remains obscure. In this review, we discuss recent advances in the understanding of TRPA1 physiology, pharmacology, and molecular function. -
An Advanced Automated Patch Clamp Protocol Design to Investigate Drug – Ion Channel Binding Dynamics
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.05.451189; this version posted July 6, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. An advanced automated patch clamp protocol design to investigate drug – ion channel binding dynamics. Peter Lukacs1, Krisztina Pesti2,3, Mátyás C. Földi1,2, Katalin Zboray1, Adam V. Toth1,2, Gábor Papp4, Arpad Mike1,2* 1Plant Protection Institute, Centre for Agricultural Research, Martonvásár, Hungary 2Department of Biochemistry, ELTE Eötvös Loránd University, Budapest, Hungary 3Semmelweis University, School of Ph.D. Studies, Budapest, Hungary 4Institute for Physics, ELTE Eötvös Loránd University, Budapest, Hungary. *Correspondence: Arpad Mike, [email protected] Keywords: automated patch-clamp, sodium channel inhibitor, binding kinetics, epilepsy, pain, neuromuscular disorders, lidocaine, riluzole Abstract Standard high throughput screening projects using automated patch-clamp instruments often fail to grasp essential details of the mechanism of action, such as binding/unbinding dynamics and modulation of gating. In this study, we aim to demonstrate that depth of analysis can be combined with acceptable throughput on such instruments. Using the microfluidics-based automated patch clamp, IonFlux Mercury, we developed a method for a rapid assessment of the mechanism of action of sodium channel inhibitors, including their state-dependent association and dissociation kinetics. The method is based on a complex voltage protocol, which is repeated at 1 Hz. Using this time resolution we could monitor the onset and offset of both channel block and modulation of gating upon drug perfusion and washout. -
Patch-Clamp Study of Y-Aminobutyric Acid Receptor C1
Proc. Natl. Acad. Sci. USA Vol. 85, pp. 9336-9340, December 1988 Neurobiology Patch-clamp study of y-aminobutyric acid receptor C1- channels in cultured astrocytes (glia/benzodiazepine/ion channel) JOACHIM BORMANN*t AND HELMUT KETTENMANNt *Max-Planck-Institut fur biophysikalische Chemie, Am Fassberg, D-3400 Gottingen, Federal Republic of Germany; and tInstitut fPir Neurobiologie, Universitat Heidelberg, Im Neuenheimer Feld 504, D-6900 Heidelberg, Federal Republic of Germany Communicated by Gerald D. Fischbach, August 22, 1988 ABSTRACT The membrane channels operated by y- receptors, did not induce any reaction in the astrocytes; aminobutyric acid (GABA) were studied in cultured astrocytes GABAA receptor antagonists, such as bicuculline and picro- from rat cerebral hemispheres by using patch-clamp tech- toxin, blocked the effect of GABA (12). Benzodiazepine niques. The channel properties appeared to be very similar, in receptor agonists and antagonists showed up further similar- many respects, to those present in neuronal cell membranes. ities to neurons, whereas the action of inverse agonists The Cl-selective channels were activated after the sequential revealed differences between neurons and glial cells (14). binding of two GABA molecules to the receptor, as deduced In the present study, we have obtained direct evidence for from the slope of the dose-response curve. Single-channel the existence of GABA-activated channels in glial cells. By currents displayed multiple conductance states of 12 pS, 21 pS, using patch-clamp techniques, we have compared the prop- 29 pS, and 43 pS, with the main-state conductance being 29 pS. erties of GABA receptor channels in cultured astrocytes to The gating properties could be described by a sequential those described for neurons. -
Mechanisms Counteracting Swelling in Brain Cells During Hyponatremia Herminia Pasantes-Morales Universidad Nacional Autónoma De México, [email protected]
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Papers in Veterinary and Biomedical Science Veterinary and Biomedical Sciences, Department of 2002 Mechanisms Counteracting Swelling in Brain Cells During Hyponatremia Herminia Pasantes-Morales Universidad Nacional Autónoma de México, [email protected] Rodrigo Franco Universidad Nacional Autónoma de México, [email protected] Benito Ordaz Universidad Nacional Autónoma de México Lenin D. Ochoa Universidad Nacional Autónoma de México Follow this and additional works at: http://digitalcommons.unl.edu/vetscipapers Part of the Biochemistry, Biophysics, and Structural Biology Commons, Cell and Developmental Biology Commons, Immunology and Infectious Disease Commons, Medical Sciences Commons, Veterinary Microbiology and Immunobiology Commons, and the Veterinary Pathology and Pathobiology Commons Pasantes-Morales, Herminia; Franco, Rodrigo; Ordaz, Benito; and Ochoa, Lenin D., "Mechanisms Counteracting Swelling in Brain Cells During Hyponatremia" (2002). Papers in Veterinary and Biomedical Science. 178. http://digitalcommons.unl.edu/vetscipapers/178 This Article is brought to you for free and open access by the Veterinary and Biomedical Sciences, Department of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Papers in Veterinary and Biomedical Science by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Published as Review Article in Archives of Medical Research 33 (2002), pp. 237–244; -
Nernst Potentials and Membrane Potential Changes
UNDERSTANDING MEMBRANE POTENTIAL CHANGES IN TERMS OF NERNST POTENTIALS: For seeing how a change in conductance to ions affects the membrane potential, follow these steps: 1. Make a graph with membrane potential on the vertical axis (-100 to +55) and time on the horizontal axis. 2. Draw dashed lines indicating the standard Nernst potential (equilibrium potential) for each ion: Na+ = +55 mV, K+ = -90mV, Cl- = -65 mV. 3. Draw lines below the horizontal axis showing the increased conductance to individual ions. 4. Start plotting the membrane potential on the left. Most graphs will start at resting potential (-70 mV) 5. When current injection (Stim) is present, move the membrane potential upward to Firing threshold. 6. For the time during which membrane conductance to a particular ion increases, move the membrane potential toward the Nernst potential for that ion. 7. During the time when conductance to a particular ion decreases, move the membrane potential away from the Nernst potential of that ion, toward a position which averages the conductances of the other ions. 8. When conductances return to their original value, membrane potential will go to its starting value. +55mV ACTION POTENTIAL SYNAPTIC POTENTIALS 0mV Membrane potential Firing threshold Firing threshold -65mV -90mV Time Time Na+ K+ Conductances Stim CHANGES IN MEMBRANE POTENTIAL ALLOW NEURONS TO COMMUNICATE The membrane potential of a neuron can be measured with an intracellular electrode. This 1 provides a measurement of the voltage difference between the inside of the cell and the outside. When there is no external input, the membrane potential will usually remain at a value called the resting potential. -
An Improved Voltage Clamp Circuit Suitable for Accurate Measurement of the Conduction Loss of Power Electronic Devices
sensors Article An Improved Voltage Clamp Circuit Suitable for Accurate Measurement of the Conduction Loss of Power Electronic Devices Qiuping Yu, Zhibin Zhao *, Peng Sun, Bin Zhao and Yumeng Cai State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, North China Electric Power University, Beijing 102206, China; [email protected] (Q.Y.); [email protected] (P.S.); [email protected] (B.Z.); [email protected] (Y.C.) * Correspondence: [email protected] Abstract: Power electronic devices are essential components of high-capacity industrial converters. Accurate assessment of their power loss, including switching loss and conduction loss, is essential to improving electrothermal stability. To accurately calculate the conduction loss, a drain–source voltage clamp circuit is required to measure the on-state voltage. In this paper, the conventional drain–source voltage clamp circuit based on a transistor is comprehensively investigated by theoretical analysis, simulations, and experiments. It is demonstrated that the anti-parallel diodes and the gate-shunt capacitance of the conventional drain–source voltage clamp circuit have adverse impacts on the accuracy and security of the conduction loss measurement. Based on the above analysis, an improved drain–source voltage clamp circuit, derived from the conventional drain–source voltage clamp circuit, is proposed to solve the above problems. The operational advantages, physical structure, and design guidelines of the improved circuit are fully presented. In addition, to evaluate the influence of component parameters on circuit performance, this article comprehensively extracts three electrical Citation: Yu, Q.; Zhao, Z.; Sun, P.; quantities as judgment indicators. Based on the working mechanism of the improved circuit and Zhao, B.; Cai, Y.