HPC-ABDS Integrated Software
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Apache Oozie Apache Oozie Get a Solid Grounding in Apache Oozie, the Workflow Scheduler System for “In This Book, the Managing Hadoop Jobs
Apache Oozie Apache Oozie Apache Get a solid grounding in Apache Oozie, the workflow scheduler system for “In this book, the managing Hadoop jobs. In this hands-on guide, two experienced Hadoop authors have striven for practitioners walk you through the intricacies of this powerful and flexible platform, with numerous examples and real-world use cases. practicality, focusing on Once you set up your Oozie server, you’ll dive into techniques for writing the concepts, principles, and coordinating workflows, and learn how to write complex data pipelines. tips, and tricks that Advanced topics show you how to handle shared libraries in Oozie, as well developers need to get as how to implement and manage Oozie’s security capabilities. the most out of Oozie. ■ Install and confgure an Oozie server, and get an overview of A volume such as this is basic concepts long overdue. Developers ■ Journey through the world of writing and confguring will get a lot more out of workfows the Hadoop ecosystem ■ Learn how the Oozie coordinator schedules and executes by reading it.” workfows based on triggers —Raymie Stata ■ Understand how Oozie manages data dependencies CEO, Altiscale ■ Use Oozie bundles to package several coordinator apps into Oozie simplifies a data pipeline “ the managing and ■ Learn about security features and shared library management automating of complex ■ Implement custom extensions and write your own EL functions and actions Hadoop workloads. ■ Debug workfows and manage Oozie’s operational details This greatly benefits Apache both developers and Mohammad Kamrul Islam works as a Staff Software Engineer in the data operators alike.” engineering team at Uber. -
Communicate the Future PROCEEDINGS HYATT REGENCY ORLANDO 20–23 MAY | ORLANDO, FL and Summit.Stc.Org #STC18
Communicate the Future PROCEEDINGS HYATT REGENCY ORLANDO 20–23 MAY | ORLANDO, FL www.stc.org and summit.stc.org #STC18 SOCIETY FOR TECHNICAL COMMUNICATION 1 Efficiency exemplified Organizations globally use Adobe FrameMaker (2017 release) Request demo to transform the way they create and deliver content Accelerated turnaround time for 70% reduction in printing and paper customized publications material cost Faster creation and delivery of content 50% faster production of PDF for new products across devices documentation 20% faster development of Accelerated publishing across formats course content Increased efficiency and reduced 20% improvement in process translation costs while producing multilingual manuals efficiency For a personalized demo or questions, write to us at [email protected] © 2018 Adobe Systems Incorporated. All rights reserved. The papers published in these proceedings were reproduced from originals furnished by the authors. The authors, not the Society for Technical Communication (STC), are solely responsible for the opinions expressed, the integrity of the information presented, and the attribution of sources. The papers presented in this publication are the works of their respective authors. Minor copyediting changes were made to ensure consistency. STC grants permission to educators and academic libraries to distribute articles from these proceedings for classroom purposes. There is no charge to these institutions, provided they give credit to the author, the proceedings, and STC. All others must request permission. All product and company names herein are the property of their respective owners. © 2018 Society for Technical Communication 9401 Lee Highway, Suite 300 Fairfax, VA 22031 USA +1.703.522.4114 www.stc.org Design and layout by Avon J. -
Unravel Data Systems Version 4.5
UNRAVEL DATA SYSTEMS VERSION 4.5 Component name Component version name License names jQuery 1.8.2 MIT License Apache Tomcat 5.5.23 Apache License 2.0 Tachyon Project POM 0.8.2 Apache License 2.0 Apache Directory LDAP API Model 1.0.0-M20 Apache License 2.0 apache/incubator-heron 0.16.5.1 Apache License 2.0 Maven Plugin API 3.0.4 Apache License 2.0 ApacheDS Authentication Interceptor 2.0.0-M15 Apache License 2.0 Apache Directory LDAP API Extras ACI 1.0.0-M20 Apache License 2.0 Apache HttpComponents Core 4.3.3 Apache License 2.0 Spark Project Tags 2.0.0-preview Apache License 2.0 Curator Testing 3.3.0 Apache License 2.0 Apache HttpComponents Core 4.4.5 Apache License 2.0 Apache Commons Daemon 1.0.15 Apache License 2.0 classworlds 2.4 Apache License 2.0 abego TreeLayout Core 1.0.1 BSD 3-clause "New" or "Revised" License jackson-core 2.8.6 Apache License 2.0 Lucene Join 6.6.1 Apache License 2.0 Apache Commons CLI 1.3-cloudera-pre-r1439998 Apache License 2.0 hive-apache 0.5 Apache License 2.0 scala-parser-combinators 1.0.4 BSD 3-clause "New" or "Revised" License com.springsource.javax.xml.bind 2.1.7 Common Development and Distribution License 1.0 SnakeYAML 1.15 Apache License 2.0 JUnit 4.12 Common Public License 1.0 ApacheDS Protocol Kerberos 2.0.0-M12 Apache License 2.0 Apache Groovy 2.4.6 Apache License 2.0 JGraphT - Core 1.2.0 (GNU Lesser General Public License v2.1 or later AND Eclipse Public License 1.0) chill-java 0.5.0 Apache License 2.0 Apache Commons Logging 1.2 Apache License 2.0 OpenCensus 0.12.3 Apache License 2.0 ApacheDS Protocol -
Persisting Big-Data the Nosql Landscape
Information Systems 63 (2017) 1–23 Contents lists available at ScienceDirect Information Systems journal homepage: www.elsevier.com/locate/infosys Persisting big-data: The NoSQL landscape Alejandro Corbellini n, Cristian Mateos, Alejandro Zunino, Daniela Godoy, Silvia Schiaffino ISISTAN (CONICET-UNCPBA) Research Institute1, UNICEN University, Campus Universitario, Tandil B7001BBO, Argentina article info abstract Article history: The growing popularity of massively accessed Web applications that store and analyze Received 11 March 2014 large amounts of data, being Facebook, Twitter and Google Search some prominent Accepted 21 July 2016 examples of such applications, have posed new requirements that greatly challenge tra- Recommended by: G. Vossen ditional RDBMS. In response to this reality, a new way of creating and manipulating data Available online 30 July 2016 stores, known as NoSQL databases, has arisen. This paper reviews implementations of Keywords: NoSQL databases in order to provide an understanding of current tools and their uses. NoSQL databases First, NoSQL databases are compared with traditional RDBMS and important concepts are Relational databases explained. Only databases allowing to persist data and distribute them along different Distributed systems computing nodes are within the scope of this review. Moreover, NoSQL databases are Database persistence divided into different types: Key-Value, Wide-Column, Document-oriented and Graph- Database distribution Big data oriented. In each case, a comparison of available databases -
Projects – Other Than Hadoop! Created By:-Samarjit Mahapatra [email protected]
Projects – other than Hadoop! Created By:-Samarjit Mahapatra [email protected] Mostly compatible with Hadoop/HDFS Apache Drill - provides low latency ad-hoc queries to many different data sources, including nested data. Inspired by Google's Dremel, Drill is designed to scale to 10,000 servers and query petabytes of data in seconds. Apache Hama - is a pure BSP (Bulk Synchronous Parallel) computing framework on top of HDFS for massive scientific computations such as matrix, graph and network algorithms. Akka - a toolkit and runtime for building highly concurrent, distributed, and fault tolerant event-driven applications on the JVM. ML-Hadoop - Hadoop implementation of Machine learning algorithms Shark - is a large-scale data warehouse system for Spark designed to be compatible with Apache Hive. It can execute Hive QL queries up to 100 times faster than Hive without any modification to the existing data or queries. Shark supports Hive's query language, metastore, serialization formats, and user-defined functions, providing seamless integration with existing Hive deployments and a familiar, more powerful option for new ones. Apache Crunch - Java library provides a framework for writing, testing, and running MapReduce pipelines. Its goal is to make pipelines that are composed of many user-defined functions simple to write, easy to test, and efficient to run Azkaban - batch workflow job scheduler created at LinkedIn to run their Hadoop Jobs Apache Mesos - is a cluster manager that provides efficient resource isolation and sharing across distributed applications, or frameworks. It can run Hadoop, MPI, Hypertable, Spark, and other applications on a dynamically shared pool of nodes. -
Efficient Support for Data-Intensive Scientific Workflows on Geo
Efficient support for data-intensive scientific workflows on geo-distributed clouds Luis Eduardo Pineda Morales To cite this version: Luis Eduardo Pineda Morales. Efficient support for data-intensive scientific workflows ongeo- distributed clouds. Computation and Language [cs.CL]. INSA de Rennes, 2017. English. NNT : 2017ISAR0012. tel-01645434v2 HAL Id: tel-01645434 https://tel.archives-ouvertes.fr/tel-01645434v2 Submitted on 13 Dec 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. A Lucía, que no dejó que me rindiera. Acknowledgements One page is not enough to thank all the people who, in one way or another, have helped, taught, and motivated me along this journey. My deepest gratitude to them all. To my amazing supervisors Gabriel Antoniu and Alexandru Costan, words fall short to thank you for your guidance, support and patience during these 3+ years. Gabriel: ¡Gracias! For your trust and support went often beyond the academic. Alex: it has been my honor to be your first PhD student, I hope I met the expectations. To my family, Lucía, for standing by my side every time, everywhere; you are the driving force in my life, I love you. -
Extended Version
Sina Sheikholeslami C u rriculum V it a e ( Last U pdated N ovember 2 0 18) Website: http://sinash.ir Present Address : https://www.kth.se/profile/sinash EIT Digital Stockholm CLC , https://linkedin.com/in/sinasheikholeslami Isafjordsgatan 26, Email: si [email protected] 164 40 Kista (Stockholm), [email protected] Sweden [email protected] Educational Background: • M.Sc. Student of Data Science, Eindhoven University of Technology & KTH Royal Institute of Technology, Under EIT-Digital Master School. 2017-Present. • B.Sc. in Computer Software Engineering, Department of Computer Engineering and Information Technology, Amirkabir University of Technology (Tehran Polytechnic). 2011-2016. • Mirza Koochak Khan Pre-College in Mathematics and Physics, Rasht, National Organization for Development of Exceptional Talents (NODET). Overall GPA: 19.61/20. 2010-2011. • Mirza Koochak Khan Highschool in Mathematics and Physics, Rasht, National Organization for Development of Exceptional Talents (NODET). Overall GPA: 19.17/20, Final Year's GPA: 19.66/20. 2007-2010. Research Fields of Interest: • Distributed Deep Learning, Hyperparameter Optimization, AutoML, Data Intensive Computing Bachelor's Thesis: • “SDMiner: A Tool for Mining Data Streams on Top of Apache Spark”, Under supervision of Dr. Amir H. Payberah (Defended on June 29th 2016). Computer Skills: • Programming Languages & Markups: o F luent in Java, Python, Scala, JavaS cript, C/C++, A ndroid Pr ogram Develop ment o Familia r wit h R, SAS, SQL , Nod e.js, An gula rJS, HTM L, JSP • -
Apache Taverna
Apache Taverna hp://taverna.incubator.apache.org/ Donal Fellows San Soiland-Reyes @donalfellows @soilandreyes [email protected] [email protected] hp://orcid.org/0000-0002-9091-5938 hp://orcid.org/0000-0001-9842-9718 Alan R Williams @alanrw [email protected] hp://orcid.org/0000-0003-3156-2105 This work is licensed under a Creave Commons Collaboraons Workshop 2015-03-26 A,ribuIon 3.0 Unported License. Taverna Workflow Ecosystem • Workflow Language — SCUFL2 (and t2flow) • Workflow Engine — Taverna • Used in… – Taverna Command Line Tool – Taverna Server – Taverna WorkBench • Allied services – myExperiment, workflow repository – Service Catalographer, service catalog software • Instantiated as BioCatalogue, BiodiversityCatalogue, … NERSC Workflow Day 2 Map of the Taverna Ecosystem Taverna Ruby client Taverna Online Applicaon-Specific Portals Player UI UI Plugins UI Plugins Plugins Taverna UI Plugins Lite Taverna Taverna Workbench UI Plugins Command UI Plugins Line Tool REST API Components Taverna Other TavernaUI Plugins APIs Server Servers Taverna SOAP API Taverna Core AcIvity Engine UI Ps UI Plugins Plugins Workflow Service many Repository Catalogs services… 3 Users, Scientific Areas, Projects Taverna In Use NERSC Workflow Day 4 Taverna Users Worldwide NERSC Workflow Day 5 Taverna Uses — Scientific Areas • Biodiversity — BioVeL project • Digital Preservation — SCAPE project • Astronomy — AstroTaverna product • Solar Wind Physics — HELIO project • In silico Medicine — VPH-Share project NERSC Workflow Day 6 Biodiversity: BioVeL • Virtual e-LaBoratory for -
Poweredge R640 Apache Hadoop
A Principled Technologies report: Hands-on testing. Real-world results. The science behind the report: Run compute-intensive Apache Hadoop big data workloads faster with Dell EMC PowerEdge R640 servers This document describes what we tested, how we tested, and what we found. To learn how these facts translate into real-world benefits, read the report Run compute-intensive Apache Hadoop big data workloads faster with Dell EMC PowerEdge R640 servers. We concluded our hands-on testing on October 27, 2019. During testing, we determined the appropriate hardware and software configurations and applied updates as they became available. The results in this report reflect configurations that we finalized on October 15, 2019 or earlier. Unavoidably, these configurations may not represent the latest versions available when this report appears. Our results The table below presents the throughput each solution delivered when running the HiBench workloads. Dell EMC™ PowerEdge™ R640 Dell EMC PowerEdge R630 Percentage more throughput solution solution Latent Dirichlet Allocation 4.13 1.94 112% (MB/sec) Random Forest (MB/sec) 100.66 94.43 6% WordCount (GB/sec) 5.10 3.45 47% The table below presents the minutes each solution needed to complete the HiBench workloads. Dell EMC PowerEdge R640 Dell EMC PowerEdge R630 Percentage less time solution solution Latent Dirichlet Allocation 17.11 36.25 52% Random Forest 5.55 5.92 6% WordCount 4.95 7.32 32% Run compute-intensive Apache Hadoop big data workloads faster with Dell EMC PowerEdge R640 servers November 2019 System configuration information The table below presents detailed information on the systems we tested. -
HDP 3.1.4 Release Notes Date of Publish: 2019-08-26
Release Notes 3 HDP 3.1.4 Release Notes Date of Publish: 2019-08-26 https://docs.hortonworks.com Release Notes | Contents | ii Contents HDP 3.1.4 Release Notes..........................................................................................4 Component Versions.................................................................................................4 Descriptions of New Features..................................................................................5 Deprecation Notices.................................................................................................. 6 Terminology.......................................................................................................................................................... 6 Removed Components and Product Capabilities.................................................................................................6 Testing Unsupported Features................................................................................ 6 Descriptions of the Latest Technical Preview Features.......................................................................................7 Upgrading to HDP 3.1.4...........................................................................................7 Behavioral Changes.................................................................................................. 7 Apache Patch Information.....................................................................................11 Accumulo........................................................................................................................................................... -
A Review of Scalable Bioinformatics Pipelines
Data Sci. Eng. (2017) 2:245–251 https://doi.org/10.1007/s41019-017-0047-z A Review of Scalable Bioinformatics Pipelines 1 1 Bjørn Fjukstad • Lars Ailo Bongo Received: 28 May 2017 / Revised: 29 September 2017 / Accepted: 2 October 2017 / Published online: 23 October 2017 Ó The Author(s) 2017. This article is an open access publication Abstract Scalability is increasingly important for bioin- Scalability is increasingly important for these analysis formatics analysis services, since these must handle larger services, since the cost of instruments such as next-gener- datasets, more jobs, and more users. The pipelines used to ation sequencing machines is rapidly decreasing [1]. The implement analyses must therefore scale with respect to the reduced costs have made the machines more available resources on a single compute node, the number of nodes which has caused an increase in dataset size, the number of on a cluster, and also to cost-performance. Here, we survey datasets, and hence the number of users [2]. The backend several scalable bioinformatics pipelines and compare their executing the analyses must therefore scale up (vertically) design and their use of underlying frameworks and with respect to the resources on a single compute node, infrastructures. We also discuss current trends for bioin- since the resource usage of some analyses increases with formatics pipeline development. dataset size. For example, short sequence read assemblers [3] may require TBs of memory for big datasets and tens of Keywords Pipeline Á Bioinformatics Á Scalable Á CPU cores [4]. The analysis must also scale out (horizon- Infrastructure Á Analysis services tally) to take advantage of compute clusters and clouds. -
SAS 9.4 Hadoop Configuration Guide for Base SAS And
SAS® 9.4 Hadoop Configuration Guide for Base SAS® and SAS/ACCESS® Second Edition SAS® Documentation The correct bibliographic citation for this manual is as follows: SAS Institute Inc. 2015. SAS® 9.4 Hadoop Configuration Guide for Base SAS® and SAS/ACCESS®, Second Edition. Cary, NC: SAS Institute Inc. SAS® 9.4 Hadoop Configuration Guide for Base SAS® and SAS/ACCESS®, Second Edition Copyright © 2015, SAS Institute Inc., Cary, NC, USA All rights reserved. Produced in the United States of America. For a hard-copy book: No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, or otherwise, without the prior written permission of the publisher, SAS Institute Inc. For a web download or e-book: Your use of this publication shall be governed by the terms established by the vendor at the time you acquire this publication. The scanning, uploading, and distribution of this book via the Internet or any other means without the permission of the publisher is illegal and punishable by law. Please purchase only authorized electronic editions and do not participate in or encourage electronic piracy of copyrighted materials. Your support of others' rights is appreciated. U.S. Government License Rights; Restricted Rights: The Software and its documentation is commercial computer software developed at private expense and is provided with RESTRICTED RIGHTS to the United States Government. Use, duplication or disclosure of the Software by the United States Government is subject to the license terms of this Agreement pursuant to, as applicable, FAR 12.212, DFAR 227.7202-1(a), DFAR 227.7202-3(a) and DFAR 227.7202-4 and, to the extent required under U.S.