Description of the Bivalve Litigiella Pacifica N. Sp
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Supplementary Tales
Metabarcoding reveals different zooplankton communities in northern and southern areas of the North Sea Jan Niklas Macher, Berry B. van der Hoorn, Katja T. C. A. Peijnenburg, Lodewijk van Walraven, Willem Renema Supplementary tables 1-5 Table S1: Sampling stations and recorded abiotic variables recorded during the NICO 10 expedition from the Dutch Coast to the Shetland Islands Sampling site name Coordinates (°N, °E) Mean remperature (°C) Mean salinity (PSU) Depth (m) S74 59.416510, 0.499900 8.2 35.1 134 S37 58.1855556, 0.5016667 8.7 35.1 89 S93 57.36046, 0.57784 7.8 34.8 84 S22 56.5866667, 0.6905556 8.3 34.9 220 S109 56.06489, 1.59652 8.7 35 79 S130 55.62157, 2.38651 7.8 34.8 73 S156 54.88581, 3.69192 8.3 34.6 41 S176 54.41489, 4.04154 9.6 34.6 43 S203 53.76851, 4.76715 11.8 34.5 34 Table S2: Species list and read number per sampling site Class Order Family Genus Species S22 S37 S74 S93 S109 S130 S156 S176 S203 Copepoda Calanoida Acartiidae Acartia Acartia clausi 0 0 0 72 0 170 15 630 3995 Copepoda Calanoida Acartiidae Acartia Acartia tonsa 0 0 0 0 0 0 0 0 23 Hydrozoa Trachymedusae Rhopalonematidae Aglantha Aglantha digitale 0 0 0 0 1870 117 420 629 0 Actinopterygii Trachiniformes Ammodytidae Ammodytes Ammodytes marinus 0 0 0 0 0 263 0 35 0 Copepoda Harpacticoida Miraciidae Amphiascopsis Amphiascopsis cinctus 344 0 0 992 2477 2500 9574 8947 0 Ophiuroidea Amphilepidida Amphiuridae Amphiura Amphiura filiformis 0 0 0 0 219 0 0 1470 63233 Copepoda Calanoida Pontellidae Anomalocera Anomalocera patersoni 0 0 586 0 0 0 0 0 0 Bivalvia Venerida -
The National Marine Biological Analytical Quality Control Scheme
The National Marine Biological Analytical Quality Control Scheme Macrobenthic Exercise Results – MB19 Jessica Taylor & David Hall [email protected] June 2012 Thomson Unicomarine Ltd. 7 Diamond Centre Works Road Letchworth Hertfordshire SG6 1LW www.unicomarine.com EXERCISE DETAILS Macrobenthos #19 Type/Contents – Natural marine sample from southern North Sea; approx. 0.5 litres of shell debris; 1 mm sieve mesh processing. Circulated – 05/09/2011 Completion Date – 02/12/2011 Number of Participating Laboratories – 9 Number of Results Received – 7 ______________________________________________________________________________ Contents Results Sheets 1 - 7. NMBAQC Scheme Interim Results – Macrobenthic exercise (MB19). Tables Table 1. Results from the analysis of Macrobenthic sample MB19 by the participating laboratories. Table 2. Comparison of the efficiency of extraction of fauna by the participating laboratories for the major taxonomic groups present in sample MB19. Table 3. Comparison of the estimates of biomass made by the participating laboratories with those made by Thomson Unicomarine Ltd. for the major taxonomic groups present in sample MB19. Table 5. Variation in faunal content reported for the artificial replicate samples distributed as MB19. Figures Figure 1. MB19 data from participating laboratories (raw - untransformed). Cluster dendrogram showing plotted data from participating laboratories as supplied. Figure 2. MB19 data reanalysed by Thomson Unicomarine Ltd. Cluster dendrogram showing plotted data from participating laboratories following reanalysis by Thomson Unicomarine Ltd. (untransformed). All residues and fauna have been reanalysed. No data truncation – all faunal groups included. Appendices Appendix 1 MB19 Instructions for participation. NMBAQC Scheme Interim Results LabCode LB1802 Summary Data SampleCode MB19 Diff. In No. Taxa -6 Sample Received 16/01/2012 Diff. -
Molecular Phylogeny of the Bivalve Superfamily Galeommatoidea
Goto et al. BMC Evolutionary Biology 2012, 12:172 http://www.biomedcentral.com/1471-2148/12/172 RESEARCH ARTICLE Open Access Molecular phylogeny of the bivalve superfamily Galeommatoidea (Heterodonta, Veneroida) reveals dynamic evolution of symbiotic lifestyle and interphylum host switching Ryutaro Goto1,2*, Atsushi Kawakita3, Hiroshi Ishikawa4, Yoichi Hamamura5 and Makoto Kato1 Abstract Background: Galeommatoidea is a superfamily of bivalves that exhibits remarkably diverse lifestyles. Many members of this group live attached to the body surface or inside the burrows of other marine invertebrates, including crustaceans, holothurians, echinoids, cnidarians, sipunculans and echiurans. These symbiotic species exhibit high host specificity, commensal interactions with hosts, and extreme morphological and behavioral adaptations to symbiotic life. Host specialization to various animal groups has likely played an important role in the evolution and diversification of this bivalve group. However, the evolutionary pathway that led to their ecological diversity is not well understood, in part because of their reduced and/or highly modified morphologies that have confounded traditional taxonomy. This study elucidates the taxonomy of the Galeommatoidea and their evolutionary history of symbiotic lifestyle based on a molecular phylogenic analysis of 33 galeommatoidean and five putative galeommatoidean species belonging to 27 genera and three families using two nuclear ribosomal genes (18S and 28S ribosomal DNA) and a nuclear (histone H3) and mitochondrial (cytochrome oxidase subunit I) protein-coding genes. Results: Molecular phylogeny recovered six well-supported major clades within Galeommatoidea. Symbiotic species were found in all major clades, whereas free-living species were grouped into two major clades. Species symbiotic with crustaceans, holothurians, sipunculans, and echiurans were each found in multiple major clades, suggesting that host specialization to these animal groups occurred repeatedly in Galeommatoidea. -
Mollusc Fauna of Iskenderun Bay with a Checklist of the Region
www.trjfas.org ISSN 1303-2712 Turkish Journal of Fisheries and Aquatic Sciences 12: 171-184 (2012) DOI: 10.4194/1303-2712-v12_1_20 SHORT PAPER Mollusc Fauna of Iskenderun Bay with a Checklist of the Region Banu Bitlis Bakır1, Bilal Öztürk1*, Alper Doğan1, Mesut Önen1 1 Ege University, Faculty of Fisheries, Department of Hydrobiology Bornova, Izmir. * Corresponding Author: Tel.: +90. 232 3115215; Fax: +90. 232 3883685 Received 27 June 2011 E-mail: [email protected] Accepted 13 December 2011 Abstract This study was performed to determine the molluscs distributed in Iskenderun Bay (Levantine Sea). For this purpose, the material collected from the area between the years 2005 and 2009, within the framework of different projects, was investigated. The investigation of the material taken from various biotopes ranging at depths between 0 and 100 m resulted in identification of 286 mollusc species and 27542 specimens belonging to them. Among the encountered species, Vitreolina cf. perminima (Jeffreys, 1883) is new record for the Turkish molluscan fauna and 18 species are being new records for the Turkish Levantine coast. A checklist of Iskenderun mollusc fauna is given based on the present study and the studies carried out beforehand, and a total of 424 moluscan species are known to be distributed in Iskenderun Bay. Keywords: Levantine Sea, Iskenderun Bay, Turkish coast, Mollusca, Checklist İskenderun Körfezi’nin Mollusca Faunası ve Bölgenin Tür Listesi Özet Bu çalışma İskenderun Körfezi (Levanten Denizi)’nde dağılım gösteren Mollusca türlerini tespit etmek için gerçekleştirilmiştir. Bu amaçla, 2005 ve 2009 yılları arasında sürdürülen değişik proje çalışmaları kapsamında bölgeden elde edilen materyal incelenmiştir. -
Molluscs: Bivalvia Laura A
I Molluscs: Bivalvia Laura A. Brink The bivalves (also known as lamellibranchs or pelecypods) include such groups as the clams, mussels, scallops, and oysters. The class Bivalvia is one of the largest groups of invertebrates on the Pacific Northwest coast, with well over 150 species encompassing nine orders and 42 families (Table 1).Despite the fact that this class of mollusc is well represented in the Pacific Northwest, the larvae of only a few species have been identified and described in the scientific literature. The larvae of only 15 of the more common bivalves are described in this chapter. Six of these are introductions from the East Coast. There has been quite a bit of work aimed at rearing West Coast bivalve larvae in the lab, but this has lead to few larval descriptions. Reproduction and Development Most marine bivalves, like many marine invertebrates, are broadcast spawners (e.g., Crassostrea gigas, Macoma balthica, and Mya arenaria,); the males expel sperm into the seawater while females expel their eggs (Fig. 1).Fertilization of an egg by a sperm occurs within the water column. In some species, fertilization occurs within the female, with the zygotes then text continues on page 134 Fig. I. Generalized life cycle of marine bivalves (not to scale). 130 Identification Guide to Larval Marine Invertebrates ofthe Pacific Northwest Table 1. Species in the class Bivalvia from the Pacific Northwest (local species list from Kozloff, 1996). Species in bold indicate larvae described in this chapter. Order, Family Species Life References for Larval Descriptions History1 Nuculoida Nuculidae Nucula tenuis Acila castrensis FSP Strathmann, 1987; Zardus and Morse, 1998 Nuculanidae Nuculana harnata Nuculana rninuta Nuculana cellutita Yoldiidae Yoldia arnygdalea Yoldia scissurata Yoldia thraciaeforrnis Hutchings and Haedrich, 1984 Yoldia rnyalis Solemyoida Solemyidae Solemya reidi FSP Gustafson and Reid. -
REVISION. of the DEEP-WATER MOLLUSCA of the ATLAN'fic COAST of NORTH AMERICA, with DE SCRIPTIONS of NEW GENERA and SPECIES
REVISION. OF THE DEEP-WATER MOLLUSCA OF THE ATLAN'fIC COAST OF NORTH AMERICA, WITH DE SCRIPTIONS OF NEW GENERA AND SPECIES. PART I.-BIVALVIA. By ADDISON E. VERRILL, P"ojessor oj Zoology in Ya.7e Uni"ersity 'and KA'l'HARINE J. BUSH, Assistant in Peabody Museum oj Yale Uni"erBity. THIS article is not intended as a review of all the known species found oft· our coasts. It is preliminary to a much more extensive report, in which full details of the distribution of all the species col lected will be given, and for which the detailed tables have beeu pre pared, giving every 8tation for each species, with its position, depth, temperature, character of t,he bottom, etc. Many of the larger and more prominent species were described and figured by the senior author several years ago in various papers pub· lished in the Transactions of the Connecticut Academy alld elsewhere. The smaller and more difficult species were put asille at that time, for more careful study. and are now presented. The families that are most fully treated in this article are the Ledidre, Cuspidaridre, Diplodontidre, amI Pectillidre. These include a very large number of deep-sea species in every region, and their species are often very difficult to distinguish without long and patient microscopic study and direct comparison of large series of specimens from various localities. _ The present article is intended to give some of the result·s of studies of this kind, made during several years, of the large series of speci mens dredged by the United States Fish Oommission off our coasts from] 871 to 1887, together with those previou8ly dredged by the senior author in the same region. -
The Genetic Analysis of Lasaea Hinemoa: the Story of an Evolutionary Oddity
The Genetic Analysis of Lasaea hinemoa: The Story of an Evolutionary Oddity KATHERINE LOCKTON A thesis submitted for the degree of Master of Science at the University of Otago, Dunedin, New Zealand 1 March 2019 ABSTRACT Lasaea is a genus of molluscs that primarily consists of minute, hermaphroditic bivalves that occupy rocky shores worldwide. The majority of Lasaea species are asexual, polyploid, direct developers. However, two Australian species are exceptions: Lasaea australis is sexual, diploid and has planktotrophic development, whereas Lasaea colmani is sexual, diploid and direct developing. The New Zealand species Lasaea hinemoa has not been phylogeographically studied. I investigated the phylogeography of L. hinemoa using mitochondrial and nuclear gene sequencing (COIII and ITS2, respectively). Additionally, I investigated population- level structuring around Dunedin using microsatellite markers that I developed. It was elucidated that the individuals that underwent genetic investigation consisted of four clades (Clade I, Clade II, Clade III and Clade IV). Clade I and Clade III dominated in New Zealand and support was garnered through gene sequencing and microsatellite analysis for these clades to represent separate cryptic species, with biogeographic splitting present. Clade II consisted of individuals that had been collected from the Antipodes Island. The Antipodes Island contained individuals from two clades (Clade I and Clade II), with Lasaea from the Kerguelen Islands being more closely related to individuals from Clade II than Clade I was to Clade II. This genetic distinction between Clade I and Clade II seemed to indicate transoceanic dispersal via the Antarctic Circumpolar Current (ACC) between the Kerguelen Islands and Antipodes Island. Clade IV clustered very distinctly from L. -
63-66, Cape Verde (Bivalvia, Lasaeidae
BASTERIA, 60: 63-66, 1996 Scacchia from the Verde Islands exserta spec. nov. Cape and Mauritania (Bivalvia, Heterodonta: Lasaeidae) CANCAP - Project Contribution No. 117 J. van der Linden Frankenslag 176, 2582 HZ The Hague, The Netherlands Scacchia is described from from exserta spec. nov. dredgedsamples around the Cape Verde Islands and off Mauritania. The shell of the new species somewhat resembles that of Scacchia oblonga (Philippi, 1836). words: Verde Key Bivalvia, Heterodonta, Lasaeidae, Scacchia, taxonomy, Cape Islands, Mauritania. There are many gaps in the knowledge of the smaller bivalves. Therefore it is not that I have found in the CANCAP surprising a new species samples dredged by the expeditions around the Cape Verde Islands and off Mauritania (MAU-II expedition), far an area so sparsely explored malacologically. The new species resembles Scacchia oblonga (Philippi, 1836), but differs in shape, the bigger and more protruding umbo and the somewhat coarser cardinal teeth. = Abbreviations: LH — J. van der Linden collection, The Hague; NNM Nationaal Natuurhistorisch Museum, Leiden. Scacchia exserta spec. nov. (figs. 1-4) Type material. — Holotype (NNM 57195): Gape Verde Islands, W. of Boa Vista, 16° 22° 46 Sta. left 10'N, 59'W, depth m (CANCAP 1986, 7.066); valve, length 5.1 from mm, height 4.2 mm. Paratypes the type locality: 1 right valve, 2 left valves (NNM 57196). Other paratypes: Cape Verde Islands: W. of Boa Vista, 16° 10'N, 22° 58'W, depth 39 CANCAP Sta. 7.065 m, 1986, (NNM 57197/1); ibidem, 16° 11', 22° 59'W, depth 40 Sta. 7.068 16° 74 Sta. -
DNA Barcoding of Marine Mollusks Associated with Corallina Officinalis
diversity Article DNA Barcoding of Marine Mollusks Associated with Corallina officinalis Turfs in Southern Istria (Adriatic Sea) Moira Burši´c 1, Ljiljana Iveša 2 , Andrej Jaklin 2, Milvana Arko Pijevac 3, Mladen Kuˇcini´c 4, Mauro Štifani´c 1, Lucija Neal 5 and Branka Bruvo Madari´c¯ 6,* 1 Faculty of Natural Sciences, Juraj Dobrila University of Pula, Zagrebaˇcka30, 52100 Pula, Croatia; [email protected] (M.B.); [email protected] (M.Š.) 2 Center for Marine Research, Ruder¯ Boškovi´cInstitute, G. Paliage 5, 52210 Rovinj, Croatia; [email protected] (L.I.); [email protected] (A.J.) 3 Natural History Museum Rijeka, Lorenzov Prolaz 1, 51000 Rijeka, Croatia; [email protected] 4 Department of Biology, Faculty of Science, University of Zagreb, Rooseveltov trg 6, 10000 Zagreb, Croatia; [email protected] 5 Kaplan International College, Moulsecoomb Campus, University of Brighton, Watts Building, Lewes Rd., Brighton BN2 4GJ, UK; [email protected] 6 Molecular Biology Division, Ruder¯ Boškovi´cInstitute, Bijeniˇcka54, 10000 Zagreb, Croatia * Correspondence: [email protected] Abstract: Presence of mollusk assemblages was studied within red coralligenous algae Corallina officinalis L. along the southern Istrian coast. C. officinalis turfs can be considered a biodiversity reservoir, as they shelter numerous invertebrate species. The aim of this study was to identify mollusk species within these settlements using DNA barcoding as a method for detailed identification of mollusks. Nine locations and 18 localities with algal coverage range above 90% were chosen at four research areas. From 54 collected samples of C. officinalis turfs, a total of 46 mollusk species were Citation: Burši´c,M.; Iveša, L.; Jaklin, identified. -
The Development of Monitoring Options for UK Mpas: Fladen Grounds R&D Case Study
JNCC/Cefas Partnership Report Series Report No. 9 The Development of Monitoring Options for UK MPAs: Fladen Grounds R&D Case Study Murray, J., Jenkins, C., Eggleton, J., Whomersley, P., Robson, L., Flavell, B. & Hinchen, H. March 2016 © JNCC, Cefas 2015 ISSN 2051-6711 The Development of Monitoring Options for UK MPAs: Fladen Grounds R&D Case Study Murray, J., Jenkins, C., Eggleton, J., Whomersley, P., Robson, L., Flavell, B. & Hinchen, H. March 2016 © JNCC, Cefas, 2016 ISSN 2051-6711 For further information please contact: Joint Nature Conservation Committee Monkstone House City Road Peterborough PE1 1JY http://jncc.defra.gov.uk This report should be cited as: Murray, J., Jenkins, C., Eggleton., J., Whomersley, P., Robson, L., Flavell, B. & Hinchen, H. 2016. The development of monitoring options for UK MPAs: Fladen Grounds R&D case study. JNCC/Cefas Partnership Report, No. 9 This report is compliant with the JNCC Evidence Quality Assurance Policy http://jncc.defra.gov.uk/page-6675 and was peer reviewed by two independent experts and the JNCC project team. The Development of Monitoring Options for UK MPAs: Fladen Grounds R&D Case Study Summary In July 2014, 30 Nature Conservation Marine Protected Areas (NCMPAs) were designated in the seas around Scotland, of which 13 are located beyond 12 nautical miles. Introduced under the Marine (Scotland) Act (2010) for inshore waters, and the Marine and Coastal Access Act (2009) for offshore waters, NCMPAs have been introduced to ensure the full range of nationally important features in Scotland’s waters are represented in the MPA network. The Central Fladen NCMPA in the Northern North Sea has been designated for the protection of the burrowed mud feature, including both the seapen and burrowing megafauna in circalittoral fine mud, and tall seapen components, and for the sub-glacial tunnel valley representative of the Fladen Deeps Key Geodiversity Area. -
Appendix 22C - Sizewell Benthic Ecology Characterisation
The Sizewell C Project 6.3 Volume 2 Main Development Site Chapter 22 Marine Ecology and Fisheries Appendix 22C - Sizewell Benthic Ecology Characterisation Revision: 1.0 Applicable Regulation: Regulation 5(2)(a) PINS Reference Number: EN010012 May 2020 Planning Act 2008 Infrastructure Planning (Applications: Prescribed Forms and Procedure) Regulations 2009 Sizewell benthic ecology characterisation TR348 Sizewell benthic ecology NOT PROTECTIVELY MARKED Page 1 of 122 characterisation TR348 Sizewell benthic ecology NOT PROTECTIVELY MARKED Page 2 of 122 characterisation Table of contents Executive summary ................................................................................................................................. 10 1 Context ............................................................................................................................................... 13 1.1 Purpose of the report................................................................................................................ 13 1.2 Thematic coverage ................................................................................................................... 13 1.3 Geographic coverage ............................................................................................................... 14 1.4 Data and information sources ................................................................................................... 17 1.4.1 BEEMS intertidal survey ................................................................................................. -
(Bivalvia, Lasaeidae) J. Van = J. Van Collection, The
BASTERIA, 60: 57-61, 1996 On Scacchia maura spec. nov. from Mauritania, with notes on Scacchia zorni Van Aartsen & Fehr-de Wal, 1985 (Bivalvia, Heterodonta: Lasaeidae) CANCAP - Project Contribution No. 116 J. van der Linden Frankenslag 176, 2582 HZ The Hague, The Netherlands The shell of Scacchia maura spec. nov. closely resembles that of the Miocene S. antwerpiensis (Glibert, 1945). The differences are minor, but constant.Especially with regard to the distribution Aartsen & Fehr-de extension the known of S. zorni Van Wal, 1985, an of range is given. Key words: Bivalvia, Heterodonta, Lasaeidae, Scacchia, taxonomy, Mauritania. INTRODUCTION - CANCAP Classifying the numerous samples of bivalves, dredged by the NNM expeditions (1976-1988), I noticed some species belonging to the genus Scacchia Philippi, 1844 (Lasaeidae), which bear, at first sight, a close resemblance to some Miocene species described byjanssen (1984). Comparison ofone ofthe unknown Scacchia species Nationaal with a sample of S. antwerpiensis (Glibert, 1945) in the collection of the Natuurhistorisch Museum, Leiden (NNM), confirmed this suspicion. Because the Recent consider former undescribed: species is not identical with the Miocene one, I the Scacchia maura spec. nov. Another species turned out to be identical with S. zorni Van Aartsen & Fehr-de Wal, until known from the south coast of A will be 1985, now only Portugal. survey given of its distribution. = = Abbreviations: LH J. van der Linden collection, The Hague; NNM Nationaal Natuurhistorisch Museum, Leiden. The fossil material is housed in the Palaeontology Department of NNM, and is here referred to with RGM registration numbers. Scacchia maura spec. nov. (figs. 1-3) — Type material (all from Mauritania).