Penicillium Spp
Total Page:16
File Type:pdf, Size:1020Kb

Load more
Recommended publications
-
Diversity and Saline Resistance of Endophytic Fungi Associated with Pinus Thunbergii in Coastal Shelterbelts of Korea Young Ju Min1, Myung Soo Park1, Jonathan J
J. Microbiol. Biotechnol. (2014), 24(3), 324–333 http://dx.doi.org/10.4014/jmb.1310.10041 Research Article jmb Diversity and Saline Resistance of Endophytic Fungi Associated with Pinus thunbergii in Coastal Shelterbelts of Korea Young Ju Min1, Myung Soo Park1, Jonathan J. Fong1, Ying Quan1, Sungcheol Jung2, and Young Woon Lim1* 1School of Biological Sciences, Seoul National University, Seoul 151-747, Republic of Korea 2Warm-Temperate and Subtropical Forest Research Center, KFRI, Seogwipo 697-050, Republic of Korea Received: October 14, 2013 Revised: November 29, 2013 The Black Pine, Pinus thunbergii, is widely distributed along the eastern coast of Korea and its Accepted: December 4, 2013 importance as a shelterbelt was highlighted after tsunamis in Indonesia and Japan. The root endophytic diversity of P. thunbergii was investigated in three coastal regions; Goseong, Uljin, and Busan. Fungi were isolated from the root tips, and growth rates of pure cultures were First published online measured and compared between PDA with and without 3% NaCl to determine their saline December 9, 2013 resistance. A total of 259 isolates were divided into 136 morphotypes, of which internal *Corresponding author transcribed spacer region sequences identified 58 species. Representatives of each major fungi Phone: +82-2-880-6708; phylum were present: 44 Ascomycota, 8 Zygomycota, and 6 Basidiomycota. Eighteen species Fax: +82-2-871-5191; exhibited saline resistance, many of which were Penicillium and Trichoderma species. Shoreline E-mail: [email protected] habitats harbored higher saline-tolerant endophytic diversity compared with inland sites. This investigation indicates that endophytes of P. thunbergii living closer to the coast may have pISSN 1017-7825, eISSN 1738-8872 higher resistance to salinity and potentially have specific relationships with P. -
Identification and Nomenclature of the Genus Penicillium
Downloaded from orbit.dtu.dk on: Dec 20, 2017 Identification and nomenclature of the genus Penicillium Visagie, C.M.; Houbraken, J.; Frisvad, Jens Christian; Hong, S. B.; Klaassen, C.H.W.; Perrone, G.; Seifert, K.A.; Varga, J.; Yaguchi, T.; Samson, R.A. Published in: Studies in Mycology Link to article, DOI: 10.1016/j.simyco.2014.09.001 Publication date: 2014 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Visagie, C. M., Houbraken, J., Frisvad, J. C., Hong, S. B., Klaassen, C. H. W., Perrone, G., ... Samson, R. A. (2014). Identification and nomenclature of the genus Penicillium. Studies in Mycology, 78, 343-371. DOI: 10.1016/j.simyco.2014.09.001 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 343–371. Identification and nomenclature of the genus Penicillium C.M. -
Identification and Nomenclature of the Genus Penicillium
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 343–371. Identification and nomenclature of the genus Penicillium C.M. Visagie1, J. Houbraken1*, J.C. Frisvad2*, S.-B. Hong3, C.H.W. Klaassen4, G. Perrone5, K.A. Seifert6, J. Varga7, T. Yaguchi8, and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, NL-3584 CT Utrecht, The Netherlands; 2Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark; 3Korean Agricultural Culture Collection, National Academy of Agricultural Science, RDA, Suwon, Korea; 4Medical Microbiology & Infectious Diseases, C70 Canisius Wilhelmina Hospital, 532 SZ Nijmegen, The Netherlands; 5Institute of Sciences of Food Production, National Research Council, Via Amendola 122/O, 70126 Bari, Italy; 6Biodiversity (Mycology), Agriculture and Agri-Food Canada, Ottawa, ON K1A0C6, Canada; 7Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Közep fasor 52, Hungary; 8Medical Mycology Research Center, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8673, Japan *Correspondence: J. Houbraken, [email protected]; J.C. Frisvad, [email protected] Abstract: Penicillium is a diverse genus occurring worldwide and its species play important roles as decomposers of organic materials and cause destructive rots in the food industry where they produce a wide range of mycotoxins. Other species are considered enzyme factories or are common indoor air allergens. Although DNA sequences are essential for robust identification of Penicillium species, there is currently no comprehensive, verified reference database for the genus. To coincide with the move to one fungus one name in the International Code of Nomenclature for algae, fungi and plants, the generic concept of Penicillium was re-defined to accommodate species from other genera, such as Chromocleista, Eladia, Eupenicillium, Torulomyces and Thysanophora, which together comprise a large monophyletic clade. -
Phylogeny and Nomenclature of the Genus Talaromyces and Taxa Accommodated in Penicillium Subgenus Biverticillium
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector available online at www.studiesinmycology.org StudieS in Mycology 70: 159–183. 2011. doi:10.3114/sim.2011.70.04 Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium R.A. Samson1, N. Yilmaz1,6, J. Houbraken1,6, H. Spierenburg1, K.A. Seifert2, S.W. Peterson3, J. Varga4 and J.C. Frisvad5 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada, 3Bacterial Foodborne Pathogens and Mycology Research Unit, National Center for Agricultural Utilization Research, 1815 N. University Street, Peoria, IL 61604, U.S.A., 4Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Közép fasor 52, Hungary, 5Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800, Kgs. Lyngby, Denmark; 6Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. *Correspondence: R.A. Samson, [email protected] Abstract: The taxonomic history of anamorphic species attributed to Penicillium subgenus Biverticillium is reviewed, along with evidence supporting their relationship with teleomorphic species classified inTalaromyces. To supplement previous conclusions based on ITS, SSU and/or LSU sequencing that Talaromyces and subgenus Biverticillium comprise a monophyletic group that is distinct from Penicillium at the generic level, the phylogenetic relationships of these two groups with other genera of Trichocomaceae was further studied by sequencing a part of the RPB1 (RNA polymerase II largest subunit) gene. -
Species-Specific PCR to Describe Local-Scale Distributions of Four
fungal ecology 6 (2013) 419e429 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/funeco Species-specific PCR to describe local-scale distributions of four cryptic species in the Penicillium 5 chrysogenum complex Alexander G.P. BROWNE*, Matthew C. FISHER, Daniel A. HENK* Department of Infectious Disease Epidemiology, Imperial College London, London, United Kingdom article info abstract Article history: Penicillium chrysogenum is a ubiquitous airborne fungus detected in every sampled region of Received 2 October 2012 the Earth. Owing to its role in Alexander Fleming’s serendipitous discovery of Penicillin in Revision received 8 March 2013 1928, the fungus has generated widespread scientific interest; however its natural history is Accepted 13 March 2013 not well understood. Research has demonstrated speciation within P. chrysogenum, Available online 15 June 2013 describing the existence of four cryptic species. To discriminate the four species, we Corresponding editor: developed protocols for species-specific diagnostic PCR directly from fungal conidia. 430 Gareth W. Griffith Penicillium isolates were collected to apply our rapid diagnostic tool and explore the dis- tribution of these fungi across the London Underground rail transport system revealing Keywords: significant differences between Underground lines. Phylogenetic analysis of multiple type Alexander Fleming isolates confirms that the ‘Fleming species’ should be named Penicillium rubens and that London Underground divergence of the four ‘Chrysogenum complex’ fungi occurred about 0.75 million yr ago. Mycology Finally, the formal naming of two new species, Penicillium floreyi and Penicillium chainii,is Penicillium chrysogenum performed. Phylogeny ª 2013 The Authors. Published by Elsevier Ltd. All rights reserved. Taxonomy Introduction In Sep. -
Phylogenetic Analysis of Penicillium Subgenus Penicillium Using Partial Β-Tubulin Sequences
STUDIES IN MYCOLOGY 49: 175-200, 2004 Phylogenetic analysis of Penicillium subgenus Penicillium using partial β-tubulin sequences Keith A. Seifert2, Angelina F.A. Kuijpers1, Jos A.M.P. Houbraken1, and Jens C. Frisvad3 ,٭Robert A. Samson1 1Centraalbureau voor Schimmelcultures, P.O. Box 85167, 3508 AD Utrecht, the Netherlands, 2Biodiversity Theme (Mycology & Botany), Environmental Sciences Team, Agriculture and Agri-Food Canada, 960 Carling Ave., Ottawa, K1A 0C6, Canada and 3Center for Microbial Biotechnology, Biocentrum-DTU, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark. Abstract Partial β-tubulin sequences were determined for 180 strains representing all accepted species of Penicillium subgenus Penicillium. The overall phylogenetic structure of the subgenus was determined by a parsimony analysis with each species represented by its type (or other reliably identified) strain. Eight subsequent analyses explored the relationships of three or four strains per species for clades identified from the initial analysis. β-tubulin sequences were excellent species markers, correlating well with phenotypic characters. The phylogeny correlated in general terms with the classification into sections and series proposed in the accompanying monograph. There was good strict consensus support for much of the gene tree, and good bootstrap support for some parts. The phylogenetic analyses suggested that sect. Viridicata, the largest section in the subgenus, is divided into three clades. Section Viridicata ser. Viridicata formed a monophyletic group divided into three subclades supported by strict consensus, with strong bootstrap support for P. tricolor (100%), P. melanoconidium (99%), P. polonicum (87%) and P. cyclopium (99%) and moderate support for P. aurantiogriseum (79%). The three strains each of Penicillium freii and P. -
207-219 44(4) 01.홍승범R.Fm
한국균학회지 The Korean Journal of Mycology Review 일균일명 체계에 의한 국내 보고 Aspergillus, Penicillium, Talaromyces 속의 종 목록 정리 김현정 1† · 김정선 1† · 천규호 1 · 김대호 2 · 석순자 1 · 홍승범 1* 1국립농업과학원 농업미생물과 미생물은행(KACC), 2강원대학교 산림환경과학대학 산림환경보호학과 Species List of Aspergillus, Penicillium and Talaromyces in Korea, Based on ‘One Fungus One Name’ System 1† 1† 1 2 1 1 Hyeon-Jeong Kim , Jeong-Seon Kim , Kyu-Ho Cheon , Dae-Ho Kim , Soon-Ja Seok and Seung-Beom Hong * 1 Korean Agricultural Culture Collection, Agricultural Microbiology Division National Institute of Agricultural Science, Wanju 55365, Korea 2 Tree Pathology and Mycology Laboratory, Department of Forestry and Environmental Systems, Kangwon National University, Chun- cheon 24341, Korea ABSTRACT : Aspergillus, Penicillium, and their teleomorphic genera have a worldwide distribution and large economic impacts on human life. The names of species in the genera that have been reported in Korea are listed in this study. Fourteen species of Aspergillus, 4 of Eurotium, 8 of Neosartorya, 47 of Penicillium, and 5 of Talaromyces were included in the National List of Species of Korea, Ascomycota in 2015. Based on the taxonomic system of single name nomenclature on ICN (International Code of Nomenclature for algae, fungi, and plants), Aspergillus and its teleomorphic genera such as Neosartorya, Eurotium, and Emericella were named as Aspergillus and Penicillium, and its teleomorphic genera such as Eupenicillium and Talaromyces were named as Penicillium (subgenera Aspergilloides, Furcatum, and Penicillium) and Talaromyces (subgenus Biverticillium) in this study. In total, 77 species were added and the revised list contains 55 spp. of Aspergillus, 82 of Penicillium, and 18 of Talaromyces. -
Species Diversity in Penicillium and Talaromyces from Herbivore Dung, and the Proposal of Two New Genera of Penicillium-Like Fungi in Aspergillaceae
VOLUME 5 JUNE 2020 Fungal Systematics and Evolution PAGES 39–75 doi.org/10.3114/fuse.2020.05.03 Species diversity in Penicillium and Talaromyces from herbivore dung, and the proposal of two new genera of penicillium-like fungi in Aspergillaceae M. Guevara-Suarez1,2, D. García1, J.F. Cano-Lira1, J. Guarro1, J. Gené1* 1Unitat de Micologia, Facultat de Medicina i Ciències de la Salut and IISPV, Universitat Rovira i Virgili, Reus, Spain 2Laboratorio de Micología y Fitopatología (LAMFU), Vicerrectoría de Investigaciones, Universidad de los Andes, Bogotá, Colombia *Corresponding author: [email protected] Key words: Abstract: Coprophilous fungi are saprotrophic organisms that show great diversity, mainly on herbivore dung. The Aspergillaceae physico-chemical characteristics of this peculiar substrate combined with the high level of fungal adaptation to different coprophilous fungi environmental conditions offer the perfect setting for discovering new taxa. This study focused on the species diversity of Eurotiales penicillium-like fungi isolated mainly from herbivore dung collected at different Spanish locations. From 130 samples, a phylogeny total of 104 isolates were obtained, and 48 species were identified. Preliminary identifications were based on morphology Trichocomaceae and partial β-tubulin (tub2) gene sequences. Putative new taxa were characterized by a multi-gene sequencing analysis testing the tub2, the internal transcribed spacer rDNA (ITS), calmodulin (cmdA), and RNA polymerase II second largest subunit (rpb2) genes, and a detailed phenotypic study. Using this polyphasic approach and following the genealogical concordance phylogenetic species recognition (GCPSR) method, we propose the new genera Penicillago (for Penicillium nodositatum) and Pseudopenicillium (for Penicillium megasporum and P. -
Phylogeny and Nomenclature of the Genus Talaromyces and Taxa Accommodated in Penicillium Subgenus Biverticillium
available online at www.studiesinmycology.org StudieS in Mycology 70: 159–183. 2011. doi:10.3114/sim.2011.70.04 Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium R.A. Samson1, N. Yilmaz1,6, J. Houbraken1,6, H. Spierenburg1, K.A. Seifert2, S.W. Peterson3, J. Varga4 and J.C. Frisvad5 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada, 3Bacterial Foodborne Pathogens and Mycology Research Unit, National Center for Agricultural Utilization Research, 1815 N. University Street, Peoria, IL 61604, U.S.A., 4Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Közép fasor 52, Hungary, 5Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800, Kgs. Lyngby, Denmark; 6Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. *Correspondence: R.A. Samson, [email protected] Abstract: The taxonomic history of anamorphic species attributed to Penicillium subgenus Biverticillium is reviewed, along with evidence supporting their relationship with teleomorphic species classified inTalaromyces. To supplement previous conclusions based on ITS, SSU and/or LSU sequencing that Talaromyces and subgenus Biverticillium comprise a monophyletic group that is distinct from Penicillium at the generic level, the phylogenetic relationships of these two groups with other genera of Trichocomaceae was further studied by sequencing a part of the RPB1 (RNA polymerase II largest subunit) gene. Talaromyces species and most species of Penicillium subgenus Biverticillium sensu Pitt reside in a monophyletic clade distant from species of other subgenera of Penicillium. -
A Worldwide List of Endophytic Fungi with Notes on Ecology and Diversity
Mycosphere 10(1): 798–1079 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/19 A worldwide list of endophytic fungi with notes on ecology and diversity Rashmi M, Kushveer JS and Sarma VV* Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014, Puducherry, India Rashmi M, Kushveer JS, Sarma VV 2019 – A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10(1), 798–1079, Doi 10.5943/mycosphere/10/1/19 Abstract Endophytic fungi are symptomless internal inhabits of plant tissues. They are implicated in the production of antibiotic and other compounds of therapeutic importance. Ecologically they provide several benefits to plants, including protection from plant pathogens. There have been numerous studies on the biodiversity and ecology of endophytic fungi. Some taxa dominate and occur frequently when compared to others due to adaptations or capabilities to produce different primary and secondary metabolites. It is therefore of interest to examine different fungal species and major taxonomic groups to which these fungi belong for bioactive compound production. In the present paper a list of endophytes based on the available literature is reported. More than 800 genera have been reported worldwide. Dominant genera are Alternaria, Aspergillus, Colletotrichum, Fusarium, Penicillium, and Phoma. Most endophyte studies have been on angiosperms followed by gymnosperms. Among the different substrates, leaf endophytes have been studied and analyzed in more detail when compared to other parts. Most investigations are from Asian countries such as China, India, European countries such as Germany, Spain and the UK in addition to major contributions from Brazil and the USA. -
Polyketides, Toxins and Pigments in Penicillium Marneffei
Toxins 2015, 7, 4421-4436; doi:10.3390/toxins7114421 OPEN ACCESS toxins ISSN 2072-6651 www.mdpi.com/journal/toxins Review Polyketides, Toxins and Pigments in Penicillium marneffei Emily W. T. Tam 1, Chi-Ching Tsang 1, Susanna K. P. Lau 1,2,3,4,* and Patrick C. Y. Woo 1,2,3,4,* 1 Department of Microbiology, The University of Hong Kong, Pokfulam, Hong Kong; E-Mails: [email protected] (E.W.T.T.); [email protected] (C.-C.T.) 2 State Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong, Pokfulam, Hong Kong 3 Research Centre of Infection and Immunology, The University of Hong Kong, Pokfulam, Hong Kong 4 Carol Yu Centre for Infection, The University of Hong Kong, Pokfulam, Hong Kong * Authors to whom correspondence should be addressed; E-Mails: [email protected] (S.K.P.L.); [email protected] (P.C.Y.W.); Tel.: +852-2255-4892 (S.K.P.L. & P.C.Y.W.); Fax: +852-2855-1241 (S.K.P.L. & P.C.Y.W.). Academic Editor: Jiujiang Yu Received: 18 September 2015 / Accepted: 22 October 2015 / Published: 30 October 2015 Abstract: Penicillium marneffei (synonym: Talaromyces marneffei) is the most important pathogenic thermally dimorphic fungus in China and Southeastern Asia. The HIV/AIDS pandemic, particularly in China and other Southeast Asian countries, has led to the emergence of P. marneffei infection as an important AIDS-defining condition. Recently, we published the genome sequence of P. marneffei. In the P. marneffei genome, 23 polyketide synthase genes and two polyketide synthase-non-ribosomal peptide synthase hybrid genes were identified. -
Catabolism of Phenylacetic Acid in Penicillium Rubens. Proteome-Wide
Journal of Proteomics 187 (2018) 243–259 Contents lists available at ScienceDirect Journal of Proteomics journal homepage: www.elsevier.com/locate/jprot Catabolism of phenylacetic acid in Penicillium rubens. Proteome-wide analysis in response to the benzylpenicillin side chain precursor T ⁎ Mohammad-Saeid Jamia,b, Juan-Francisco Martínc, , Carlos Barreiroa, Rebeca Domínguez-Santosa,c, María-Fernanda Vasco-Cárdenasa,c, María Pascuala, ⁎⁎ Carlos García-Estradaa,d, a INBIOTEC, Instituto de Biotecnología de León, Avda. Real n°. 1, Parque Científico de León, 24006 León, Spain b Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran c Área de Microbiología, Departamento de Biología Molecular, Universidad de León, Campus de Vegazana s/n, 24071 León, Spain d Departamento de Ciencias Biomédicas, Facultad de Veterinaria, Universidad de León, Campus de Vegazana s/n, 24071 León, Spain ARTICLE INFO ABSTRACT Keywords: Biosynthesis of benzylpenicillin in filamentous fungi (e.g. Penicillium chrysogenum - renamed as Penicillium ru- Phenylacetic acid bens- and Aspergillus nidulans) depends on the addition of CoA-activated forms of phenylacetic acid to iso- Benzylpenicillin penicillin N. Phenylacetic acid is also detoxified by means of the homogentisate pathway, which begins with the 2-hydroxyphenylacetate hydroxylation of phenylacetic acid to 2-hydroxyphenylacetate in a reaction catalysed by the pahA-encoded Phenylacetate hydroxylase phenylacetate hydroxylase. This catabolic step has been tested in three different penicillin-producing strains of Proteomics P. rubens (P. notatum, P. chrysogenum NRRL 1951 and P. chrysogenum Wisconsin 54–1255) in the presence of Penicillium rubens sucrose and lactose as non-repressing carbon sources. P. chrysogenum Wisconsin 54–1255 was able to accumulate 2-hydroxyphenylacetate at late culture times.