Sediment Quality Assessment Technical Support Manual
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Caenogastropoda Eulimidae) from the Western Iberian Peninsula
Biodiversity Journal, 2021, 12 (2): 277–282, https://doi.org/10.31396/Biodiv.Jour.2021.12.2.277.282 https://zoobank.org:pub:AA55BDF3-1E5E-469D-84A8-5EC6A013150F A new minute eulimid (Caenogastropoda Eulimidae) from the western Iberian Peninsula Serge Gofas1 & Luigi Romani2* 1Departamento de Biología Animal, Universidad de Málaga, Campus de Teatinos s/n, 29071 Málaga, Spain,; e-mail: [email protected] 2Via delle ville 79, 55012 Capannori (Lucca), Italy; e-mail: [email protected] *Corresponding author ABSTRACT An enigmatic small-sized gastropod is recorded on few shells originating from the western Iberian Peninsula. It is assigned to the family Eulimidae relying on shell characters, and com- pared to species of several genera which share some morphological features with it. It is de- scribed as new and provisionally included in Chileutomia Tate et Cossmann, 1898, although with reservation, as we refrain to establish a new genus without anatomical and molecular data which can clarify the phylogenetic relationships of the new species. KEY WORDS Gastropoda; new species; NW Atlantic Ocean. Received 06.01.2020; accepted 28.02.2021; published online 12.04.2021 INTRODUCTION tematics and intra-familial relationships is at its very beginning, for instance the phylogenetic posi- The Eulimidae Philippi, 1853 are a species-rich tion of the Eulimidae within the Caenogastropoda taxon of marine snails, mostly parasitic of Echino- was assessed by molecular means only recently dermata (Warén, 1984). The family comprises (Takano & Kano, 2014), leading to consider them about one thousand recent valid species recognized as sister-group to the Vanikoridae (Bouchet et al., worldwide (MolluscaBase, 2021a), but a more re- 2017). -
The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
INFORMATION to USERS the Most Advanced Technology Has Been
INFORMATION TO USERS The most advanced technology has been used to photograph and reproduce this manuscript from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand corner and continuing from left to right in equal sections with small overlaps. Each original is also photographed in one exposure and is included in reduced form at the back of the book. Photographs included in the original manuscript have been reproduced xerographically in this copy. Higher quality 6" x 9" black and white photographic prints are available for any photographs or illustrations appearing in this copy for an additional charge. Contact UMI directly to order. University M'ProCms International A Ben & Howe'' Information Company 300 North Zeeb Road Ann Arbor Ml 40106-1346 USA 3-3 761-4 700 800 501 0600 Order Numb e r 9022566 S o m e aspects of the functional morphology of the shell of infaunal bivalves (Mollusca) Watters, George Thomas, Ph.D. -
Polychaeta: Serpulidae) from Southeastern Australia
AUSTRALIAN MUSEUM SCIENTIFIC PUBLICATIONS Knight-Jones, E. W., P. Knight-Jones and L. C. Llewellyn, 1974. Spirorbinae (Polychaeta: Serpulidae) from southeastern Australia. Notes on their taxonomy, ecology, and distribution. Records of the Australian Museum 29(3): 106–151. [1 May 1974]. doi:10.3853/j.0067-1975.29.1974.230 ISSN 0067-1975 Published by the Australian Museum, Sydney naturenature cultureculture discover discover AustralianAustralian Museum Museum science science is is freely freely accessible accessible online online at at www.australianmuseum.net.au/publications/www.australianmuseum.net.au/publications/ 66 CollegeCollege Street,Street, SydneySydney NSWNSW 2010,2010, AustraliaAustralia o ~------------------~o 25-20 and above 23-17 19- 14 17- 13 ood below 20 20 40 40 ,-- 50 50 Figure I.-Top left, collecting sites near Adelaide; top right, ditto near Sydney; bottom, collecting locations inset, showing also currents of warm, cool (interrupted lines) and cold water (dotted lines). A second smaller arrow-head indicates that the current occasionally reverses. Coastal water types and the mean position of the subtropical convergence (see p. 147) modified from Knox (1963), with mean summer (February) and winter (August) temperatures in degreesC. SPIRORBINAE (POLYCHAETA: SERPULIDAE) FROM SOUTHEASTERN AUSTRALIA. Notes on their Taxonomy, Ecology, and Distribution By E. W. KNIGHT-jONES and PHYLLIS KNIGHT-jONES University College of Swansea, U.K. and L. C. LLEWELLYN, New South Wales State Fisheries, Sydney, Australia Figures 1-14 Manuscript received, 1st September, 1972 SUMMARY Fifteen species belonging to seven genera are described, with pictorial and dichotomous keys to identification and notes on their distribution in other regions. All occur on or adjoining the shore, or on seaweeds cast ashore. -
Part I. an Annotated Checklist of Extant Brachyuran Crabs of the World
THE RAFFLES BULLETIN OF ZOOLOGY 2008 17: 1–286 Date of Publication: 31 Jan.2008 © National University of Singapore SYSTEMA BRACHYURORUM: PART I. AN ANNOTATED CHECKLIST OF EXTANT BRACHYURAN CRABS OF THE WORLD Peter K. L. Ng Raffles Museum of Biodiversity Research, Department of Biological Sciences, National University of Singapore, Kent Ridge, Singapore 119260, Republic of Singapore Email: [email protected] Danièle Guinot Muséum national d'Histoire naturelle, Département Milieux et peuplements aquatiques, 61 rue Buffon, 75005 Paris, France Email: [email protected] Peter J. F. Davie Queensland Museum, PO Box 3300, South Brisbane, Queensland, Australia Email: [email protected] ABSTRACT. – An annotated checklist of the extant brachyuran crabs of the world is presented for the first time. Over 10,500 names are treated including 6,793 valid species and subspecies (with 1,907 primary synonyms), 1,271 genera and subgenera (with 393 primary synonyms), 93 families and 38 superfamilies. Nomenclatural and taxonomic problems are reviewed in detail, and many resolved. Detailed notes and references are provided where necessary. The constitution of a large number of families and superfamilies is discussed in detail, with the positions of some taxa rearranged in an attempt to form a stable base for future taxonomic studies. This is the first time the nomenclature of any large group of decapod crustaceans has been examined in such detail. KEY WORDS. – Annotated checklist, crabs of the world, Brachyura, systematics, nomenclature. CONTENTS Preamble .................................................................................. 3 Family Cymonomidae .......................................... 32 Caveats and acknowledgements ............................................... 5 Family Phyllotymolinidae .................................... 32 Introduction .............................................................................. 6 Superfamily DROMIOIDEA ..................................... 33 The higher classification of the Brachyura ........................ -
Tampa Bay Benthic Monitoring Program: Status of Middle Tampa Bay: 1993-1998
Tampa Bay Benthic Monitoring Program: Status of Middle Tampa Bay: 1993-1998 Stephen A. Grabe Environmental Supervisor David J. Karlen Environmental Scientist II Christina M. Holden Environmental Scientist I Barbara Goetting Environmental Specialist I Thomas Dix Environmental Scientist II MARCH 2003 1 Environmental Protection Commission of Hillsborough County Richard Garrity, Ph.D. Executive Director Gerold Morrison, Ph.D. Director, Environmental Resources Management Division 2 INTRODUCTION The Environmental Protection Commission of Hillsborough County (EPCHC) has been collecting samples in Middle Tampa Bay 1993 as part of the bay-wide benthic monitoring program developed to (Tampa Bay National Estuary Program 1996). The original objectives of this program were to discern the ―health‖—or ―status‖-- of the bay’s sediments by developing a Benthic Index for Tampa Bay as well as evaluating sediment quality by means of Sediment Quality Assessment Guidelines (SQAGs). The Tampa Bay Estuary Program provided partial support for this monitoring. This report summarizes data collected during 1993-1998 from the Middle Tampa Bay segment of Tampa Bay. 3 METHODS Field Collection and Laboratory Procedures: A total of 127 stations (20 to 24 per year) were sampled during late summer/early fall ―Index Period‖ 1993-1998 (Appendix A). Sample locations were randomly selected from computer- generated coordinates. Benthic samples were collected using a Young grab sampler following the field protocols outlined in Courtney et al. (1993). Laboratory procedures followed the protocols set forth in Courtney et al. (1995). Data Analysis: Species richness, Shannon-Wiener diversity, and Evenness were calculated using PISCES Conservation Ltd.’s (2001) ―Species Diversity and Richness II‖ software. -
Diversity and Life-Cycle Analysis of Pacific Ocean Zooplankton by Video Microscopy and DNA Barcoding: Crustacea
Journal of Aquaculture & Marine Biology Research Article Open Access Diversity and life-cycle analysis of Pacific Ocean zooplankton by video microscopy and DNA barcoding: Crustacea Abstract Volume 10 Issue 3 - 2021 Determining the DNA sequencing of a small element in the mitochondrial DNA (DNA Peter Bryant,1 Timothy Arehart2 barcoding) makes it possible to easily identify individuals of different larval stages of 1Department of Developmental and Cell Biology, University of marine crustaceans without the need for laboratory rearing. It can also be used to construct California, USA taxonomic trees, although it is not yet clear to what extent this barcode-based taxonomy 2Crystal Cove Conservancy, Newport Coast, CA, USA reflects more traditional morphological or molecular taxonomy. Collections of zooplankton were made using conventional plankton nets in Newport Bay and the Pacific Ocean near Correspondence: Peter Bryant, Department of Newport Beach, California (Lat. 33.628342, Long. -117.927933) between May 2013 and Developmental and Cell Biology, University of California, USA, January 2020, and individual crustacean specimens were documented by video microscopy. Email Adult crustaceans were collected from solid substrates in the same areas. Specimens were preserved in ethanol and sent to the Canadian Centre for DNA Barcoding at the Received: June 03, 2021 | Published: July 26, 2021 University of Guelph, Ontario, Canada for sequencing of the COI DNA barcode. From 1042 specimens, 544 COI sequences were obtained falling into 199 Barcode Identification Numbers (BINs), of which 76 correspond to recognized species. For 15 species of decapods (Loxorhynchus grandis, Pelia tumida, Pugettia dalli, Metacarcinus anthonyi, Metacarcinus gracilis, Pachygrapsus crassipes, Pleuroncodes planipes, Lophopanopeus sp., Pinnixa franciscana, Pinnixa tubicola, Pagurus longicarpus, Petrolisthes cabrilloi, Portunus xantusii, Hemigrapsus oregonensis, Heptacarpus brevirostris), DNA barcoding allowed the matching of different life-cycle stages (zoea, megalops, adult). -
Conotoxin Diversity in Chelyconus Ermineus (Born, 1778) and the Convergent Origin of Piscivory in the Atlantic and Indo-Pacific
GBE Conotoxin Diversity in Chelyconus ermineus (Born, 1778) and the Convergent Origin of Piscivory in the Atlantic and Indo-Pacific Cones Samuel Abalde1,ManuelJ.Tenorio2,CarlosM.L.Afonso3, and Rafael Zardoya1,* 1Departamento de Biodiversidad y Biologıa Evolutiva, Museo Nacional de Ciencias Naturales (MNCN-CSIC), Madrid, Spain Downloaded from https://academic.oup.com/gbe/article-abstract/10/10/2643/5061556 by CSIC user on 17 January 2020 2Departamento CMIM y Q. Inorganica-INBIO, Facultad de Ciencias, Universidad de Cadiz, Puerto Real, Spain 3Fisheries, Biodiversity and Conervation Group, Centre of Marine Sciences (CCMAR), Universidade do Algarve, Campus de Gambelas, Faro, Portugal *Corresponding author: E-mail: [email protected]. Accepted: July 28, 2018 Data deposition: Raw RNA seq data: SRA database: project number SRP139515 (SRR6983161-SRR6983169) Abstract The transcriptome of the venom duct of the Atlantic piscivorous cone species Chelyconus ermineus (Born, 1778) was determined. The venom repertoire of this species includes at least 378 conotoxin precursors, which could be ascribed to 33 known and 22 new (unassigned) protein superfamilies, respectively. Most abundant superfamilies were T, W, O1, M, O2, and Z, accounting for 57% of all detected diversity. A total of three individuals were sequenced showing considerable intraspecific variation: each individual had many exclusive conotoxin precursors, and only 20% of all inferred mature peptides were common to all individuals. Three different regions (distal, medium, and proximal with respect to the venom bulb) of the venom duct were analyzed independently. Diversity (in terms of number of distinct members) of conotoxin precursor superfamilies increased toward the distal region whereas transcripts detected toward the proximal region showed higher expression levels. -
Metagenetic Analysis of 2017 Plankton Samples from Prince William Sound, Alaska
Metagenetic Analysis of 2017 Plankton Samples from Prince William Sound, Alaska. Report to Prince William Sound Regional Citizens’ Advisory Council (PWSRCAC) From Molecular Ecology Laboratory Moss Landing Marine Laboratory Dr. Jonathan Geller Melinda Wheelock Martin Guo Any opinions expressed in this PWSRCAC-commissioned report are not necessarily those of PWSRCAC. December 1, 2018 Revised August 15, 2019 Abstract This report describes the methods and findings of the metagenetic analysis of plankton samples from the waters of Prince William Sound (PWS), Alaska. The study was done to identify zooplankton, in particular the larvae of invasive benthic species. Plankton samples, collected by the Prince William Sound Science Center (PWSSC), were analyzed by the Molecular Ecology Laboratory at the Moss Landing Marine Laboratories. The samples were taken from five stations in May of 2017 in Port Valdez and elsewhere in PWS. DNA was extracted from bulk plankton and a portion of the mitochondrial Cytochrome c oxidase subunit 1 gene, the most commonly used DNA barcode for animals, was amplified by polymerase chain reaction (PCR). Products of PCR were sequenced using Illumina reagents and MiSeq instrument. 211 operational taxonomic units (an approximation of biological species) were found and 52 were identified to species. Most species were crustaceans and molluscs, and none were non-native. We also compared PWSRCAC samples taken in 2016 to the current set of samples. Fewer species were identified in 2017 than in 2016, but sampling methods varied across years. Standardization of methods and a longer time series are necessary to investigate temporal trends. Page 1 of 17 952.431.190815.MLMetagenetic Introduction Monitoring marine habitat for species of concern, including invasive species, can be costly and time-consuming, which limits the information available to resource managers, scientists, and the public. -
Potential Therapeutic Applications of Synthetic Conotoxin S-Cal14.2B, Derived from Californiconus Californicus, for Treating Type 2 Diabetes
biomedicines Article Potential Therapeutic Applications of Synthetic Conotoxin s-cal14.2b, Derived from Californiconus californicus, for Treating Type 2 Diabetes Pavel H. Lugo-Fabres 1,2 , Leslie M. Otero-Sastre 2, Johanna Bernáldez-Sarabia 2, Tanya A. Camacho-Villegas 1 , Noemi Sánchez-Campos 2, Janeth Serrano-Bello 3 , Luis A. Medina 4,5 , Saé Muñiz-Hernández 6 , Lizbeth de la Cruz 7 , Isabel Arenas 7 , Antonio Barajas-Martínez 7, David E. Garcia 7, Linda Nuñez-Garcia 8, Jorge González-Canudas 8 and Alexei F. Licea-Navarro 2,* 1 CONACYT-Unidad de Biotecnología Médica y Farmacéutica, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco (CIATEJ) A. C., Av. Normalistas 800, Colinas de la Normal, Guadalajara 44270, Jalisco, Mexico; [email protected] (P.H.L.-F.); [email protected] (T.A.C.-V.) 2 Departamento de Innovación Biomédica, Centro de Investigación Científica y de Educación Superior de Ensenada (CICESE), Carretera Ensenada-Tijuana No. 3918, Zona Playitas, Ensenada 22860, Baja California, Mexico; [email protected] (L.M.O.-S.); [email protected] (J.B.-S.); [email protected] (N.S.-C.) 3 Laboratorio de Bioingeniería de Tejidos, División de Estudios de Posgrado e Investigación, Facultad de Odontología, Universidad Nacional Autónoma de México, Ciudad de México 04360, Mexico; Citation: Lugo-Fabres, P.H.; [email protected] 4 Otero-Sastre, L.M.; Bernáldez-Sarabia, Laboratorio de Física Médica-Unidad de Investigación Biomédica en Cáncer-INCan, Ciudad de México 14080, Mexico; medina@fisica.unam.mx J.; Camacho-Villegas, T.A.; 5 Instituto de Física, Universidad Nacional Autónoma de México (UNAM), Ciudad de México 04510, Mexico Sánchez-Campos, N.; Serrano-Bello, 6 Laboratorio de Oncología Experimental, Subdirección de Investigación Básica, Instituto Nacional de J.; Medina, L.A.; Muñiz-Hernández, Cancerología, Ciudad de México 14080, Mexico; [email protected] S.; de la Cruz, L.; Arenas, I.; et al. -
A Review of Ethnographic and Historically Recorded Dentaliurn Source Locations
FISHINGFOR IVORYWORMS: A REVIEWOF ETHNOGRAPHICAND HISTORICALLY RECORDEDDENTALIUM SOURCE LOCATIONS Andrew John Barton B.A., Simon Fraser University, 1979 THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF ARTS IN THE DEPARTMENT OF ARCHAEOLOGY Q Andrew John Barton 1994 SIMON FRASER UNIVERSITY Burnaby October, 1994 All rights reserved. This work may not be reproduced in whole or in part, by photocopy or other means without permission of the author. Name: Andrew John Barton Degree: Master of Arts (Archaeology) Title of Thesis: Fishing for Ivory Worms: A Review of Ethnographic and Historically Recorded Dentaliurn Source Locations Examining Committee: Chairperson: Jack D. Nance - -, David V. Burley Senior Supervisor Associate Professor Richard Inglis External Examiner Department of Aboriginal Affairs Government of British Columbia PARTIAL COPYRIGHT LICENSE I hereby grant to Simon Fraser University the right to lend my thesis or dissertation (the title of which is shown below) to users of the Simon Fraser University Library, and to make partial or single copies only for such users or in response to a request from the library of any other university, or other educational institution, on its own behalf or for one of its users. I further agree that permission for multiple copying of this thesis for scholarly purposes may be granted by me or the Dean of Graduate Studies. It is understood that copying or publication of this thesis for financial gain shall not be allowed without my written permission. Title of ThesisIDissertation: Fishing for Ivory Worms: A Review of Ethnographic and Historically Recorded Dentalium Source Locations Author: Andrew John Barton Name October 14, 1994 Date This study reviews and examines historic and ethnographic written documents that identify locations where Dentaliurn shells were procured by west coast Native North Americans. -
Mollusca) Found Along the Brazilian Coast, with Two New Synonymies in the Genus Gadila Gray, 1847
Biota Neotrop., vol. 13, no. 2 A commented list of Scaphopoda (Mollusca) found along the Brazilian coast, with two new synonymies in the genus Gadila Gray, 1847 Leonardo Santos de Souza1,2, Isabella Campos Vieira Araújo1 & Carlos Henrique Soares Caetano1 1Departamento de Zoologia, Instituto de Biociências, Universidade Federal do Estado do Rio de Janeiro – UNIRIO, Av. Pasteur, 458, Urca, CEP 22290-240, Rio de Janeiro, RJ, Brasil 2Corresponding author: Leonardo Santos de Souza, e-mail: [email protected] SOUZA, L.S., ARAÚJO, I.C.V. & CAETANO, C.H.S. A commented list of Scaphopoda (Mollusca) found along the Brazilian coast, with two new synonymies in the genus Gadila Gray, 1847. Biota Neotrop. (13)2: http://www.biotaneotropica.org.br/v13n2/en/abstract?inventory+bn03213022013 Abstract: This review aims to present an updated checklist of scaphopods, based mainly on literature database. There is a total of 40 species (six families) for Brazil, including information about the distribution and bathymetric range of each taxon. We propose two synonyms with the aid of morphometry of the shell, for the genus Gadila: G. longa as junior synonym of G. elongata and G. robusta as junior synonym of G. pandionis. Keywords: scaphopods, morphometry, synonyms, distribution, bathymetry. SOUZA, L.S., ARAÚJO, I.C.V. & CAETANO, C.H.S. Lista comentada dos Scaphopoda (Mollusca) encontrados ao longo da costa Brasileira, com duas novas sinonímias no gênero Gadila Gray, 1847. Biota Neotrop. 13(2): http://www.biotaneotropica.org.br/v13n2/pt/abstract?inventory+bn0321302201 Resumo: Uma lista atualizada dos escafópodes da costa brasileira pertencentes a seis famílias é apresentada baseada principalmente em dados da literatura.