CMSC 426/626 - Computer Security Fall 2014
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Shell Scripting with Bash
Introduction to Shell Scripting with Bash Charles Jahnke Research Computing Services Information Services & Technology Topics for Today ● Introductions ● Basic Terminology ● How to get help ● Command-line vs. Scripting ● Variables ● Handling Arguments ● Standard I/O, Pipes, and Redirection ● Control Structures (loops and If statements) ● SCC Job Submission Example Research Computing Services Research Computing Services (RCS) A group within Information Services & Technology at Boston University provides computing, storage, and visualization resources and services to support research that has specialized or highly intensive computation, storage, bandwidth, or graphics requirements. Three Primary Services: ● Research Computation ● Research Visualization ● Research Consulting and Training Breadth of Research on the Shared Computing Cluster (SCC) Me ● Research Facilitator and Administrator ● Background in biomedical engineering, bioinformatics, and IT systems ● Offices on both CRC and BUMC ○ Most of our staff on the Charles River Campus, some dedicated to BUMC ● Contact: [email protected] You ● Who has experience programming? ● Using Linux? ● Using the Shared Computing Cluster (SCC)? Basic Terminology The Command-line The line on which commands are typed and passed to the shell. Username Hostname Current Directory [username@scc1 ~]$ Prompt Command Line (input) The Shell ● The interface between the user and the operating system ● Program that interprets and executes input ● Provides: ○ Built-in commands ○ Programming control structures ○ Environment -
Powerview Command Reference
PowerView Command Reference TRACE32 Online Help TRACE32 Directory TRACE32 Index TRACE32 Documents ...................................................................................................................... PowerView User Interface ............................................................................................................ PowerView Command Reference .............................................................................................1 History ...................................................................................................................................... 12 ABORT ...................................................................................................................................... 13 ABORT Abort driver program 13 AREA ........................................................................................................................................ 14 AREA Message windows 14 AREA.CLEAR Clear area 15 AREA.CLOSE Close output file 15 AREA.Create Create or modify message area 16 AREA.Delete Delete message area 17 AREA.List Display a detailed list off all message areas 18 AREA.OPEN Open output file 20 AREA.PIPE Redirect area to stdout 21 AREA.RESet Reset areas 21 AREA.SAVE Save AREA window contents to file 21 AREA.Select Select area 22 AREA.STDERR Redirect area to stderr 23 AREA.STDOUT Redirect area to stdout 23 AREA.view Display message area in AREA window 24 AutoSTOre .............................................................................................................................. -
An Empirical Comparison of Widely Adopted Hash Functions in Digital Forensics: Does the Programming Language and Operating System Make a Difference?
2015 Annual ADFSL Conference on Digital Forensics, Security and Law Proceedings May 19th, 11:45 AM An Empirical Comparison of Widely Adopted Hash Functions in Digital Forensics: Does the Programming Language and Operating System Make a Difference? Satyendra Gurjar Cyber Forensics Research and Education Group (UNHcFREG), Tagliatela College of Engineering, ECECS Department, University of New Haven, [email protected] Ibrahim Baggili Cyber Forensics Research and Education Group (UNHcFREG), Tagliatela College of Engineering, ECECS Department, University of New Haven Frank Breitinger CyberFollow F thisorensics and additional Research worksand Education at: https:/ Gr/commons.eroup (UNHcFREG),au.edu/adfsl Tagliatela College of Engineering, ECECS Depar Partment,t of the Univ Aviationersity ofSaf Newety and Hav Securityen Commons, Computer Law Commons, Defense and Security AliceStudies Fischer Commons , Forensic Science and Technology Commons, Information Security Commons, CyberNational For Securityensics Resear Law Commonsch and Education, OS and GrNetworksoup (UNHcFREG), Commons T, Otheragliatela Computer College Sciences of Engineering, Commons ECECS, and theDepar Socialtment, Contr Univol,ersity Law , ofCrime, New andHav enDe,viance AFischer@newha Commons ven.edu Scholarly Commons Citation Gurjar, Satyendra; Baggili, Ibrahim; Breitinger, Frank; and Fischer, Alice, "An Empirical Comparison of Widely Adopted Hash Functions in Digital Forensics: Does the Programming Language and Operating System Make a Difference?" (2015). Annual ADFSL Conference on Digital Forensics, Security and Law. 6. https://commons.erau.edu/adfsl/2015/tuesday/6 This Peer Reviewed Paper is brought to you for free and open access by the Conferences at Scholarly Commons. It has been accepted for inclusion in Annual ADFSL Conference on Digital Forensics, Security and Law by an (c)ADFSL authorized administrator of Scholarly Commons. -
Passwords, Hashes, and Cracks, Oh My! How Mac OS X Implements Password Authentication Dave Dribin “Why Should I Care?”
Passwords, Hashes, and Cracks, Oh My! How Mac OS X Implements Password Authentication Dave Dribin “Why Should I Care?” • Application Developer • System Administrator • End User Authentication • Authentication is the process of attempting to verify a user’s identity • Passwords authenticate using a “shared secret” History • Mac OS X based on NeXTSTEP • NeXTSTEP Unix on top of Mach • Unix developed by AT&T Bell Labs on DEC PDP-11 • Unix based on mainframe time-sharing systems UNIX Time-Sharing System Version 1 • Released in 1971 • First release of Unix as we know it • Plaintext passwords Plaintext Problems “Perhaps the most memorable [example] occurred in the early 60’s when a system administrator on the CTSS system at MIT was editing the password file and another system administrator was editing the daily message that is printed on everyone’s terminal on login. Due to a software design error, the temporary editor files of the two users were interchanged and thus, for a time, the password file was printed on every terminal when it was logged in.” -- Robert Morris and Ken Thompson, April 3,1978 Unix Versions 3, 4, 5, 6 • Released 1973 through 1975 • Encrypted Password • Password file is readable by all NAME passwd -- password file DESCRIPTION passwd contains for each user the following in- formation: name (login name, contains no upper case) encrypted password numerical user ID GCOS job number and box number initial working directory program to use as Shell This is an ASCII file. Each field within each user's entry is separated from the next by a colon. -
Lecture 17 the Shell and Shell Scripting Simple Shell Scripts
Lecture 17 The Shell and Shell Scripting In this lecture • The UNIX shell • Simple Shell Scripts • Shell variables • File System commands, IO commands, IO redirection • Command Line Arguments • Evaluating Expr in Shell • Predicates, operators for testing strings, ints and files • If-then-else in Shell • The for, while and do loop in Shell • Writing Shell scripts • Exercises In this course, we need to be familiar with the "UNIX shell". We use it, whether bash, csh, tcsh, zsh, or other variants, to start and stop processes, control the terminal, and to otherwise interact with the system. Many of you have heard of, or made use of "shell scripting", that is the process of providing instructions to shell in a simple, interpreted programming language . To see what shell we are working on, first SSH into unix.andrew.cmu.edu and type echo $SHELL ---- to see the working shell in SSH We will be writing our shell scripts for this particular shell (csh). The shell scripting language does not fit the classic definition of a useful language. It does not have many of the features such as portability, facilities for resource intensive tasks such as recursion or hashing or sorting. It does not have data structures like arrays and hash tables. It does not have facilities for direct access to hardware or good security features. But in many other ways the language of the shell is very powerful -- it has functions, conditionals, loops. It does not support strong data typing -- it is completely untyped (everything is a string). But, the real power of shell program doesn't come from the language itself, but from the diverse library that it can call upon -- any program. -
Jellyfish Count -M 21 -S 100M -T 10 -C Reads.Fasta
Jellysh 2 User Guide December 13, 2013 Contents 1 Getting started 2 1.1 Counting all k-mers . .2 1.1.1 Counting k-mers in sequencing reads . .3 1.1.2 Counting k-mers in a genome . .3 1.2 Counting high-frequency k-mers . .3 1.2.1 One pass method . .3 1.2.2 Two pass method . .4 2 FAQ 5 2.1 How to read compressed les (or other format)?newmacroname . .5 2.2 How to read multiple les at once? . .5 2.3 How to reduce the output size? . .6 3 Subcommands 7 3.1 histo .............................................7 3.2 dump .............................................7 3.3 query .............................................7 3.4 info ..............................................8 3.5 merge ............................................8 3.6 cite . .8 1 Chapter 1 Getting started 1.1 Counting all k-mers The basic command to count all k-mers is as follows: jellyfish count -m 21 -s 100M -t 10 -C reads.fasta This will count canonical (-C) 21-mers (-m 21), using a hash with 100 million elements (-s 100 M) and 10 threads (-t 10) in the sequences in the le reads.fasta. The output is written in the le 'mer_counts.jf' by default (change with -o switch). To compute the histogram of the k-mer occurrences, use the histo subcommand (see section 3.1): jellyfish histo mer_counts.jf To query the counts of a particular k-mer, use the query subcommand (see section 3.3): jellyfish query mer_counts.jf AACGTTG To output all the counts for all the k-mers in the le, use the dump subcommand (see section 3.2): jellyfish dump mer_counts.jf > mer_counts_dumps.fa To get some information on how, when and where this jellysh le was generated, use the info subcommand (see section 3.4): jellyfish info mer_counts.jf For more detail information, see the relevant sections in this document. -
Husky: Towards a More Efficient and Expressive Distributed Computing Framework
Husky: Towards a More Efficient and Expressive Distributed Computing Framework Fan Yang Jinfeng Li James Cheng Department of Computer Science and Engineering The Chinese University of Hong Kong ffyang,jfli,[email protected] ABSTRACT tends Spark, and Gelly [3] extends Flink, to expose to programmers Finding efficient, expressive and yet intuitive programming models fine-grained control over the access patterns on vertices and their for data-parallel computing system is an important and open prob- communication patterns. lem. Systems like Hadoop and Spark have been widely adopted Over-simplified functional or declarative programming interfaces for massive data processing, as coarse-grained primitives like map with only coarse-grained primitives also limit the flexibility in de- and reduce are succinct and easy to master. However, sometimes signing efficient distributed algorithms. For instance, there is re- over-simplified API hinders programmers from more fine-grained cent interest in machine learning algorithms that compute by fre- control and designing more efficient algorithms. Developers may quently and asynchronously accessing and mutating global states have to resort to sophisticated domain-specific languages (DSLs), (e.g., some entries in a large global key-value table) in a fine-grained or even low-level layers like MPI, but this raises development cost— manner [14, 19, 24, 30]. It is not clear how to program such algo- learning many mutually exclusive systems prolongs the develop- rithms using only synchronous and coarse-grained operators (e.g., ment schedule, and the use of low-level tools may result in bug- map, reduce, and join), and even with immutable data abstraction prone programming. -
Cryptography As an Operating System Service: a Case Study
Cryptography As An Operating System Service: A Case Study ANGELOS D. KEROMYTIS Columbia University JASON L. WRIGHT and THEO DE RAADT OpenBSD Project and MATTHEW BURNSIDE Columbia University Cryptographic transformations are a fundamental building block in many security applications and protocols. To improve performance, several vendors market hardware accelerator cards. However, until now no operating system provided a mechanism that allowed both uniform and efficient use of this new type of resource. We present the OpenBSD Cryptographic Framework (OCF), a service virtualization layer im- plemented inside the operating system kernel, that provides uniform access to accelerator function- ality by hiding card-specific details behind a carefully designed API. We evaluate the impact of the OCF in a variety of benchmarks, measuring overall system performance, application throughput and latency, and aggregate throughput when multiple applications make use of it. We conclude that the OCF is extremely efficient in utilizing cryptographic accelerator func- tionality, attaining 95% of the theoretical peak device performance and over 800 Mbps aggregate throughput using 3DES. We believe that this validates our decision to opt for ease of use by applica- tions and kernel components through a uniform API and for seamless support for new accelerators. We are grateful to Global Technologies Group, Inc. for providing us with two XL-Crypt (Hifn 7811) boards, one Hifn 6500 reference board, and one Hifn 7814 reference board. We are also grateful to Network Security Technologies, Inc. for providing us with two Hifn 7751 boards, one Broadcom 5820 board, and two Broadcom 5805 boards. In addition, Network Security Technologies funded part of the original development of the device-support software. -
Daniel Lyons [email protected] Why?
How to Hurt Your Friends with (loop) Daniel Lyons [email protected] Why? Fast Powerful Widely-used Like format you can probably do more with it than you realize. Even though you hate it, you may have to read it in someone else’s code. On my machine, 578 of 1068 library files contain at least one loop form (54.12%). It’s fast as hell. loop as List Comprehension Python: [ f(x) for x in L if p(x) ] Haskell: [ f(x) | x <- L, p(x) ] Erlang: [ f(X) || X <- L, p(X) ]. Loop: (loop for x in L when (p x) collect (f x)) Things You Can Do With loop Variable initialization and stepping Value accumulation Conditional and unconditional execution Pre- and post-loop operations Termination whenever and however you like This is taken from the list of kinds of loop clauses from CLtL Ch. 26 - variable initialization and stepping - value accumulation - termination conditions - unconditional execution - conditional execution - miscellaneous operations Initialization for/as with repeat for and as mean the same thing with is a single ‘let’ statement repeat runs the loop a specified number of times for Is Really Complicated for var from expr to expr for var in expr for var on expr Of course from can also be downfrom or upfrom, and to can also be downto, upto, below or above for var in expr: Loops over every item in the list Optionally by some stepping function for var on expr loops over the cdrs of a list, giving you each successive sublist Loops over each sublist of the list, e.g. -
Permissions and Ownership
Getting Started with Linux: Novell’s Guide to CompTIA’s Linux+ Objective 1 Understand User and Group Configuration Files Information on users and groups on a Linux system is kept in the following files: ■ /etc/passwd ■ /etc/shadow ■ /etc/group Whenever possible, you should not modify these files with an editor. Instead, use the Security and Users modules in YaST or the command line tools described in the next objective, “Manage User Accounts and Groups from the Command Line” on 7-12. Modifying these files with an editor can lead to errors (especially in /etc/shadow), such as a user—including the user root—no longer being able to log in. To ensure consistency of these files, you need to understand how to ■ Check /etc/passwd and /etc/shadow ■ Convert Passwords to and from Shadow /etc/passwd The file /etc/passwd stores information for each user. In the past, UNIX and Linux users were handled in a single file: /etc/passwd. The user name, the UID, the home directory, the standard shell, and the encrypted password were all stored in this file. The password was encrypted using the function crypt (man 3 crypt). In principle, the plain text password could not be deciphered from the encrypted password. 7-2 Version 2 Use the Command Line Interface to Administer the System However, there are programs (such as john) that use dictionaries to encrypt various passwords with crypt, and then compare the results with the entries in the file /etc/passwd. With the calculation power of modern computers, simple passwords can be “guessed” within minutes. -
Linux Command Line: Aliases, Prompts and Scripting
Linux Command Line: Aliases, Prompts and Scri... 1 Linux Command Line: Aliases, Prompts and Scripting By Steven Gordon on Wed, 23/07/2014 - 7:46am Here are a few notes on using the Bash shell that I have used as a demo to students. It covers man pages, aliases, shell prompts, paths and basics of shell scripting. For details, see the many free manuals of Bash shell scripting. 1. Man Pages Man pages are the reference manuals for commands. Reading the man pages is best when you know the command to use, but cannot remember the syntax or options. Simply type man cmd and then read the manual. E.g.: student@netlab01:~$ man ls If you don't know which command to use to perform some task, then there is a basic search feature called apropos which will do a keyword search through an index of man page names and short descriptions. You can run it using either the command apropos or using man -k. E.g.: student@netlab01:~$ man superuser No manual entry for superuser student@netlab01:~$ apropos superuser su (1) - change user ID or become superuser student@netlab01:~$ man -k "new user" newusers (8) - update and create new users in batch useradd (8) - create a new user or update default new user information Some common used commands are actually not standalone program, but commands built-in to the shell. For example, below demonstrates the creation of aliases using alias. But there is no man page for alias. Instead, alias is described as part of the bash shell man page. -
The Xargs Package
The xargs package Manuel Pégourié-Gonnard [email protected] v1.1 (2008/03/22) Contents 1 Introduction 1 2 Usage 1 3 Implementation 4 Important note for French users: a French version of the user documentation is included in the xargs-fr.pdf file. 1 Introduction A Defining commands with an optional argument is easy in LTEX2ε. There is, how- ever, two limitations: you can make only one argument optional and it must be the first one. The xargs package provide extended variants of \newcommand & friends, for which these limitations no longer hold: It is now easy to define commands with many (and freely placed) optional arguments, using a nice hkeyi=hvaluei syntax. For example, the following defines a command with two optional arguments. \newcommandx*\coord[3][1=1, 3=n]{(#2_{#1},\ldots,#2_{#3})} $\coord{x}$ (x1,...,xn) $\coord[0]{y}$ (y0,...,yn) $\coord{z}[m]$ (z1,...,zm) $\coord[0]{t}[m]$ (t0,...,tm) 2 Usage 2.1 Basics The xargs package defines an extended variant for every LATEX macro related to macro definition. xargs’s macro are named after their LATEX counterparts, just adding an x at end (see the list in the margin). Here is the complete list: \newcommandx \renewcommandx \newenvironmentx \renewenvironmentx \providecommandx \DeclareRobustCommandx \CheckCommandx 1 If you are not familiar with all of them, you can either just keep using the A commands you already know, or check Lamport’s book or the LTEX Companion (or any LATEX2ε manual) to learn the others. Since these commands all share the same syntax, I’ll always use \newcommandx in the following, but remember it works the same for all seven commands.