Application of Graph Databases for Static Code Analysis of Web-Applications
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Graph Database for Collaborative Communities Rania Soussi, Marie-Aude Aufaure, Hajer Baazaoui
Graph Database for Collaborative Communities Rania Soussi, Marie-Aude Aufaure, Hajer Baazaoui To cite this version: Rania Soussi, Marie-Aude Aufaure, Hajer Baazaoui. Graph Database for Collaborative Communities. Community-Built Databases, Springer, pp.205-234, 2011. hal-00708222 HAL Id: hal-00708222 https://hal.archives-ouvertes.fr/hal-00708222 Submitted on 14 Jun 2012 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Graph Database For collaborative Communities 1, 2 1 Rania Soussi , Marie-Aude Aufaure , Hajer Baazaoui2 1Ecole Centrale Paris, Applied Mathematics & Systems Laboratory (MAS), SAP Business Objects Academic Chair in Business Intelligence 2Riadi-GDL Laboratory, ENSI – Manouba University, Tunis Abstract Data manipulated in an enterprise context are structured data as well as un- structured data such as emails, documents, social networks, etc. Graphs are a natural way of representing and modeling such data in a unified manner (Structured, semi-structured and unstructured ones). The main advantage of such a structure relies in the dynamic aspect and the capability to represent relations, even multiple ones, between objects. Recent database research work shows a growing interest in the definition of graph models and languages to allow a natural way of handling data appearing. -
Property Graph Vs RDF Triple Store: a Comparison on Glycan Substructure Search
RESEARCH ARTICLE Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search Davide Alocci1,2, Julien Mariethoz1, Oliver Horlacher1,2, Jerven T. Bolleman3, Matthew P. Campbell4, Frederique Lisacek1,2* 1 Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, 1211, Switzerland, 2 Computer Science Department, University of Geneva, Geneva, 1227, Switzerland, 3 Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, 1211, Switzerland, 4 Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia * [email protected] Abstract Resource description framework (RDF) and Property Graph databases are emerging tech- nologies that are used for storing graph-structured data. We compare these technologies OPEN ACCESS through a molecular biology use case: glycan substructure search. Glycans are branched Citation: Alocci D, Mariethoz J, Horlacher O, tree-like molecules composed of building blocks linked together by chemical bonds. The Bolleman JT, Campbell MP, Lisacek F (2015) molecular structure of a glycan can be encoded into a direct acyclic graph where each node Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search. PLoS ONE 10(12): represents a building block and each edge serves as a chemical linkage between two build- e0144578. doi:10.1371/journal.pone.0144578 ing blocks. In this context, Graph databases are possible software solutions for storing gly- Editor: Manuela Helmer-Citterich, University of can structures and Graph query languages, such as SPARQL and Cypher, can be used to Rome Tor Vergata, ITALY perform a substructure search. Glycan substructure searching is an important feature for Received: July 16, 2015 querying structure and experimental glycan databases and retrieving biologically meaning- ful data. -
The Design & Implementation of an Abstract Semantic Graph For
Clemson University TigerPrints All Dissertations Dissertations 12-2011 The esiD gn & Implementation of an Abstract Semantic Graph for Statement-Level Dynamic Analysis of C++ Applications Edward Duffy Clemson University, [email protected] Follow this and additional works at: https://tigerprints.clemson.edu/all_dissertations Part of the Computer Sciences Commons Recommended Citation Duffy, Edward, "The eD sign & Implementation of an Abstract Semantic Graph for Statement-Level Dynamic Analysis of C++ Applications" (2011). All Dissertations. 832. https://tigerprints.clemson.edu/all_dissertations/832 This Dissertation is brought to you for free and open access by the Dissertations at TigerPrints. It has been accepted for inclusion in All Dissertations by an authorized administrator of TigerPrints. For more information, please contact [email protected]. THE DESIGN &IMPLEMENTATION OF AN ABSTRACT SEMANTIC GRAPH FOR STATEMENT-LEVEL DYNAMIC ANALYSIS OF C++ APPLICATIONS A Dissertation Presented to the Graduate School of Clemson University In Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy Computer Science by Edward B. Duffy December 2011 Accepted by: Dr. Brian A. Malloy, Committee Chair Dr. James B. von Oehsen Dr. Jason P. Hallstrom Dr. Pradip K. Srimani In this thesis, we describe our system, Hylian, for statement-level analysis, both static and dynamic, of a C++ application. We begin by extending the GNU gcc parser to generate parse trees in XML format for each of the compilation units in a C++ application. We then provide verification that the generated parse trees are structurally equivalent to the code in the original C++ application. We use the generated parse trees, together with an augmented version of the gcc test suite, to recover a grammar for the C++ dialect that we parse. -
Database Software Market: Billy Fitzsimmons +1 312 364 5112
Equity Research Technology, Media, & Communications | Enterprise and Cloud Infrastructure March 22, 2019 Industry Report Jason Ader +1 617 235 7519 [email protected] Database Software Market: Billy Fitzsimmons +1 312 364 5112 The Long-Awaited Shake-up [email protected] Naji +1 212 245 6508 [email protected] Please refer to important disclosures on pages 70 and 71. Analyst certification is on page 70. William Blair or an affiliate does and seeks to do business with companies covered in its research reports. As a result, investors should be aware that the firm may have a conflict of interest that could affect the objectivity of this report. This report is not intended to provide personal investment advice. The opinions and recommendations here- in do not take into account individual client circumstances, objectives, or needs and are not intended as recommen- dations of particular securities, financial instruments, or strategies to particular clients. The recipient of this report must make its own independent decisions regarding any securities or financial instruments mentioned herein. William Blair Contents Key Findings ......................................................................................................................3 Introduction .......................................................................................................................5 Database Market History ...................................................................................................7 Market Definitions -
GRAPH DATABASE THEORY Comparing Graph and Relational Data Models
GRAPH DATABASE THEORY Comparing Graph and Relational Data Models Sridhar Ramachandran LambdaZen © 2015 Contents Introduction .................................................................................................................................................. 3 Relational Data Model .............................................................................................................................. 3 Graph databases ....................................................................................................................................... 3 Graph Schemas ............................................................................................................................................. 4 Selecting vertex labels .............................................................................................................................. 4 Examples of label selection ....................................................................................................................... 4 Drawing a graph schema ........................................................................................................................... 6 Summary ................................................................................................................................................... 7 Converting ER models to graph schemas...................................................................................................... 9 ER models and diagrams .......................................................................................................................... -
Weaver: a High-Performance, Transactional Graph Database Based on Refinable Timestamps
Weaver: A High-Performance, Transactional Graph Database Based on Refinable Timestamps Ayush Dubey Greg D. Hill Robert Escriva Cornell University Stanford University Cornell University Emin Gun¨ Sirer Cornell University ABSTRACT may erroneously conclude that n7 is reachable from n1, even Graph databases have become a common infrastructure com- though no such path ever existed. ponent. Yet existing systems either operate on offline snap- Providing strongly consistent queries is particularly chal- shots, provide weak consistency guarantees, or use expensive lenging for graph databases because of the unique charac- concurrency control techniques that limit performance. teristics of typical graph queries. Queries such as traversals In this paper, we introduce a new distributed graph data- often read a large portion of the graph, and consequently base, called Weaver, which enables efficient, transactional take a long time to execute. For instance, the average degree graph analyses as well as strictly serializable ACID transac- of separation in the Facebook social network is 3.5 [8], which tions on dynamic graphs. The key insight that allows Weaver implies that a breadth-first traversal that starts at a random to combine strict serializability with horizontal scalability vertex and traverses 4 hops will likely read all 1.59 billion and high performance is a novel request ordering mecha- users. On the other hand, typical key-value and relational nism called refinable timestamps. This technique couples queries are much smaller; the NewOrder transaction in the coarse-grained vector timestamps with a fine-grained timeline TPC-C benchmark [7], which comprises 45% of the frequency oracle to pay the overhead of strong consistency only when distribution, consists of 26 reads and writes on average [21]. -
Dense Semantic Graph and Its Application in Single Document Summarisation
Dense Semantic Graph and its Application in Single Document Summarisation Monika Joshi1, Hui Wang1 and Sally McClean2 1 University of Ulster, Co. Antrim, BT37 0QB, UK [email protected] , [email protected] 2 University of Ulster, Co. Londonderry, BT52 1SA, UK [email protected] Abstract Semantic graph representation of text is an important part of natural language processing applications such as text summarisation. We have studied two ways of constructing the semantic graph of a document from dependency parsing of its sentences. The first graph is derived from the subject-object-verb representation of sentence, and the second graph is derived from considering more dependency relations in the sentence by a shortest distance dependency path calculation, resulting in a dense semantic graph. We have shown through experiments that dense semantic graphs gives better performance in semantic graph based unsupervised extractive text summarisation. 1 Introduction Information can be categorized into many forms -- numerical, visual, text, and audio. Text is abundantly present in online resources. Online blogs, Wikipedia knowledge base, patent documents and customer reviews are potential information sources for different user requirements. One of these requirements is to present a short summary of the originally larger document. The summary is expected to include important in- formation from the original text documents. This is usually achieved by keeping the informative parts of the document and reducing repetitive information. There are two types of text summarization: multiple document summarisation and single document summarization. The former is aimed at removing repetitive content in a collection of documents. -
Document Vs Graph Database
Document Vs Graph Database Is Cornelius tricentennial when Apollo reclothes telescopically? Carbonated Angelo defiling, his mainsheet ridicule paralysed mulishly. Agonistic and farinaceous Jerrold retimed her somniloquists burbles while Heinz rope some nymph tho. Recently due not the variety properties of instance data your database management systems GDBMSs have emerged as real important complement. When and augment to Choose Graph Databases over Relational. Mainly categorized into four types Key-value pair Column-oriented big-based and Document-oriented. Capture store analyze and manage collections of data. Graph databases can he thought through as a subcategory of the document store model in that they store began in documents and don't insist that data drive to a. Neo4J an sturdy and still heavily used graph paper had begun to gain. Since several of bath's data is conduct in relational database format how hot you convert any current journey to save graph database format See a. 5 Graph Databases to Consider ReadWrite. NoSQL databases or non-relational databases can be document based graph databases key-value pairs or wide-column stores NoSQL databases don't. This tape because mercury can arbitrarily decide what should rattle a vertex vs what should adorn a. Graph Databases NOSQL and Neo4j InfoQ. MongoDB and CouchDB are both examples of document stores Graph databases Last is the theater complex non-relational database will It's. An Entity Relationship Diagram commonly used to model data in SQL RDBMS vs. Column-oriented databases and document-oriented databases also belong to gauge family. Nosql Distilled was that NoSQL databases use aggregate data models than. -
Autowig: Automatic Generation of Python Bindings for C++ Libraries
AutoWIG: automatic generation of python bindings for C++ libraries Pierre Fernique and Christophe Pradal EPI Virtual Plants, Inria, Montpellier, France AGAP, CIRAD, INRA, Montpellier SupAgro, Univ Montpellier, Montpellier, France ABSTRACT Most of Python and R scientific packages incorporate compiled scientific libraries to speed up the code and reuse legacy libraries. While several semi-automatic solutions exist to wrap these compiled libraries, the process of wrapping a large library is cumbersome and time consuming. In this paper, we introduce AutoWIG, a Python package that wraps automatically compiled libraries into high-level languages using LLVM/Clang technologies and the Mako templating engine. Our approach is auto- matic, extensible, and applies to complex C++ libraries, composed of thousands of classes or incorporating modern meta-programming constructs. Subjects Data Science, Scientific Computing and Simulation, Programming Languages, Software Engineering Keywords C++, Python, Automatic bindings generation INTRODUCTION Many scientific libraries are written in low-level programming languages such as C and C++. Such libraries entail the usage of the traditional edit/compile/execute cycle in order to produce high-performance programs. This leads to lower computer processing time at the cost of high scientist coding time. At the opposite end of the spectrum, scripting languages such as MATLAB, Octave (John, David Bateman & Wehbring, 2014, Submitted 6 July 2017 Accepted 26 February 2018 for numerical work) Sage (The Sage Developers, 2015, for symbolic mathematics), R (R Published 2 April 2018 Core Team, 2014, for statistical analyses) or Python (Oliphant, 2007, for general purposes) Corresponding author provide an interactive framework that allows data scientists to explore their data, test new Pierre Fernique, [email protected] ideas, combine algorithmic approaches and evaluate their results on the fly. -
The Top 5 Use Cases of Graph Databases Unlocking New Possibilities with Connected Data
The #1 Platform for Connected Data White Paper The Top 5 Use Cases of Graph Databases Unlocking New Possibilities with Connected Data Jim Webber Chief Scientist, Neo Technology & Ian Robinson Senior Engineer, Neo Technology neo4j.com The #1 Platform for Connected Data The Top 5 Use Cases of Graph Databases TABLE OF CONTENTS Introduction 1 The Top 5 Use Cases Fraud Detection 2 of Graph Databases Real-Time Recommendations 4 Unlocking New Possibilities with Connected Data Master Data Jim Webber & Ian Robinson Management 6 Network & IT Introduction Operations 8 “Big data” grows bigger every year, but today’s enterprise leaders don’t only need to manage larger volumes of data, but they critically need to generate insight from their existing data. So Identity & Access how should CIOs and CTOs generate those insights? Management 10 To paraphrase Seth Godin, businesses need to stop merely collecting data points, and start connecting them. In other words, the relationships between data points matter almost more Conclusion 12 than the individual points themselves. In order to leverage those data relationships, your organization needs a database technology that stores relationship information as a first-class entity. That technology is a graph database. Ironically, legacy relational database management systems (RDBMS) are poor at handling “Stop merely collecting relationships between data points. Their tabular data models and rigid schemas make it data points, and start difficult to add new or different kinds of connections. connecting them.” Graphs are the future. Not only do graph databases effectively store the relationships between data points, but they’re also flexible in adding new kinds of relationships oradapting a data model to new business requirements. -
Trends in Development of Databases and Blockchain
Trends in Development of Databases and Blockchain Mayank Raikwar∗, Danilo Gligoroski∗, Goran Velinov† ∗ Norwegian University of Science and Technology (NTNU) Trondheim, Norway † University Ss. Cyril and Methodius Skopje, Macedonia Email: {mayank.raikwar,danilog}@ntnu.no, goran.velinov@finki.ukim.mk Abstract—This work is about the mutual influence between some features which traditional database has. Blockchain can two technologies: Databases and Blockchain. It addresses two leverage the traditional database features by either integrat- questions: 1. How the database technology has influenced the ing the traditional database with blockchain or, to create a development of blockchain technology?, and 2. How blockchain technology has influenced the introduction of new functionalities blockchain-oriented distributed database. The inclusion of the in some modern databases? For the first question, we explain how database features will leverage the blockchain with low la- database technology contributes to blockchain technology by un- tency, high throughput, fast scalability, and complex queries on locking different features such as ACID (Atomicity, Consistency, blockchain data. Thus having the features of both blockchain Isolation, and Durability) transactional consistency, rich queries, and database, the application enhances its efficiency and real-time analytics, and low latency. We explain how the CAP (Consistency, Availability, Partition tolerance) theorem known security. Many of the blockchain platforms are now integrating for databases influenced -
Relational to Graph Database: Migration
Name: José A Alvarado-Guzmán Affiliation: Faculty Practice Organization, Columbia Medical Center, Columbia University Email: [email protected] Presentation type (s): Software Demonstration Relational to Graph Database: Migration José A. Alvarado-Guzmán, MS, Itay Keren, MS Data Science Institute, Columbia University, NY, NY, USA; Electronic Engineering, Columbia University, NY, NY , USA Abstract This paper describes the design and implementation of a Java application use as a data migration tool between a relational database and a graph database. Using the Observational Health Data Science and Informatics (OHDSI) White Rabbit and Rabbit In A Hat as a basis, we developed a user friendly multi-thread GUI that allow the migration of relational data to Neo4j. Introduction One of the greatest business trends of this millennium in Information Management is to leveraging high connected data with complex and dynamic relationships. The organization ability to understand and analyze this type of data will be key in determining how successful an organization could be among its competitors. For any significant size, graph databases are the best way of representing and query highly connected data. The increased popularity of graph data and graph thinking was mainly driven by the tremendous success of social media (Facebook & Twitter) and the commercial success of companies like Google that centered their business model on graph technologies. The easy and free accessibility of general purpose graph databases thanks to the open source community, Neo4j for example, is also impulsing the graph database usage and popularity. Despite the flexibility and performance of graph databases on high connected data, most developers still prefer to model this data using the relational model due to the learning curve that graph data storage and querying requires.