From Lamarckian Fertilizers to Fungal Castles: Recapturing the Pre-1985 Literature on Endophytic and Saprotrophic Fungi Associated with Ectomycorrhizal Root Systems
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Mycorrhizae's Role in Plant Nutrition and Protection from Pathogens
Current Investigations in Agriculture and Current Research DOI: 10.32474/CIACR.2019.08.000277 ISSN: 2637-4676 Research Article Mycorrhizae’s Role in Plant Nutrition and Protection from Pathogens Mohammad Imad khrieba* Plant Pathology and Biological Control, National Commission of Biotechnology (NCBT), Syria *Corresponding author: Mohammad Imad khrieba, Plant Pathology and Biological Control, National Commission of Biotechnology (NCBT), Syria Received: October 22, 2019 Published: December 02, 2019 Abstract Mycorrhizae establish symbiotic relationships with plants and play an essential role in plant growth, disease protection, and overall soil quality. There are two main categories of Mycorrhizae relationships: Endomycorrhizal fungi (Arbuscular Mycorrhizal Fungi) (AMF) form relationships with over 90% of plants (including turf grasses). Ectomycorrhizae fungi form relationships with only about 2% of plants, but some of them are quite common. In this scientific review, we will only talk about Endomycorrhizal. Mycorrhizae described in current scientific literature, the Endomycorrhizal the most abundant and widespread. The molecular basis of nutrient exchange between Arbuscular Mycorrhizal (AM) fungi and host plants is presented. The role of AM fungi in disease protection, Root colonisation by Arbuscular Mycorrhizal Fungi (AMF) can improve plant resistance/tolerance to biotic stresses. Although this bio protection has been amply described in different plant systems, the underlying mechanisms remain largely unknown. Besides mechanisms such as improved plant nutrition and competition, experimental evidence supports the involvement of plant defense mechanisms in the observed protection. During mycorrhiza establishment, modulation of plant defenses responses occurs upon recognition of the AMF in order to achieve a functional symbiosis. As a consequence of this modulation, a mild, but effective activation of the plant immune responses may occur, not only locally but also systemically. -
Mycorrhizae, Mycorrhizospheres, and Reforestation: Current Knowledge and Research Needs
929 Mycorrhizae, mycorrhizospheres, and reforestation: current knowledge and research needs D. A. PERRY Department of Forest Science, College of Forestry, Oregon State University, Corvallis, OR, U.S.A. 97331 R. MOLINA United States Department of Agriculture, Forest Service, Pacific Northwest Research Station, Corvallis, OR, U.S.A. 97331 AND M. P. AMARANTHUS Department of Forest Science, College of Forestry, Oregon State University, Corvallis, OR, U.S.A. 97331 Received October 21, 1986 Accepted May 13, 1987 PERRY, D. A., MOLINA, R., and AMARANTHUS, M. P. 1987. Mycorrhizae, mycorrhizospheres, and reforestation: current knowledge and research needs. Can. J. For. Res. 17 : 929-940. Although not a panacea, management of mycorrhizae and associated organisms is an important reforestation aid. Its three major components are protection of the indigenous soil community and evaluation of inoculation needs, integration of inoculation programs into existing reforestation technology, and research. Clear-cutting frequently results in reduced mycorrhizae formation, particularly when reforestation is delayed and no other host plants are present to maintain fungal populations. Implications of such reductions for reforestation vary with environmental factors and tree species. Adequate mycorrhiza formation is especially critical for ectomycorrhizal trees growing on poor soils or in environments where seedlings must establish quickly to survive. It may also be important where early successional, noncrop plants do not support the same mycobiont as the crop. In such circumstances, a self-reinforcing trend may develop, with poor mycorrhiza formation reducing seedling survival and poor tree stocking leading to further loss of mycorrhizal inocula. Inoculating nursery seedlings with mycobionts holds promise for improving outplanting performance only if site-adapted fungi are used. -
Taxonomy and Epidemiology of <I>Mucor Irregularis</I> , Agent Of
UvA-DARE (Digital Academic Repository) Taxonomy and epidemiology Mucor irregularis, agent of chronic cutaneous mucormycosis Lu, X.L.; Najafzadeh, M.J.; Dolatabadi, S.; Ran, Y.P.; Gerrits van den Ende, A.H.G.; Shen, Y.N.; Li, C.Y.; Xi, L.Y.; Hao, F.; Zhang, Q.Q.; Li, R.Y.; Hu, Z.M.; Lu, G.; Wang, J.J.; Drogari- Apiranthitou, M.; Klaassen, C.; Meis, J.F.; Hagen, F.; Liu, W.D.; de Hoog, G.S. DOI 10.3767/003158513X665539 Publication date 2013 Document Version Final published version Published in Persoonia - Molecular Phylogeny and Evolution of Fungi Link to publication Citation for published version (APA): Lu, X. L., Najafzadeh, M. J., Dolatabadi, S., Ran, Y. P., Gerrits van den Ende, A. H. G., Shen, Y. N., Li, C. Y., Xi, L. Y., Hao, F., Zhang, Q. Q., Li, R. Y., Hu, Z. M., Lu, G., Wang, J. J., Drogari-Apiranthitou, M., Klaassen, C., Meis, J. F., Hagen, F., Liu, W. D., & de Hoog, G. S. (2013). Taxonomy and epidemiology Mucor irregularis, agent of chronic cutaneous mucormycosis. Persoonia - Molecular Phylogeny and Evolution of Fungi, 30, 48-56. https://doi.org/10.3767/003158513X665539 General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. -
The Plant – Arbuscular Mycorrhizal Fungi – Bacteria – Pathogen System
The Plant – Arbuscular Mycorrhizal Fungi – Bacteria – Pathogen System Multifunctional Role of AMF Spore-Associated Bacteria Dharam Parkash Bharadwaj Faculty of Natural Resources and Agricultural Sciences Department of Forest Mycology and Pathology Uppsala Doctoral thesis Swedish University of Agricultural Sciences Uppsala 2007 1 Acta Universitatis Agriculturae Sueciae 2007: 90 ISSN 1652-6880 ISBN 978-91-576-7389-3 © 2007 Dharam Parkash Bharadwaj, Uppsala Tryck: SLU Service/Repro, Uppsala 2007 2 Abstract Bharadwaj, D.P. 2007. The Plant – Arbuscular Mycorrhizal Fungi – Bacteria – Pathogen System: Multifunctional Role of AMF Spore-Associated Bacteria. Doctor’s dissertation. ISBN 978-91-576-7389-3, ISSN 1652-6880. The aim of this study was to determine the role of the bacteria associated with arbuscular mycorrhizal (AM) fungi in the interactions between AM fungi, plant hosts and pathogens. Mycorrhizal traits were studied in a potato host using field rhizosphere soils of 12 different plant species as inoculum. High colonisation was found with soil of Festuca ovina and Leucanthemum vulgare, which contained two dominant AMF species (Glomus mosseae and G. intraradices). Bacteria associated with spores of AM fungi (AMB) were isolated from these two AM fungal species with either of the two plant species as hosts. Identification based on fatty acid methyl ester profile analysis revealed high diversity and specific occurrence of certain taxa with either of the two AMF. Some AMB were strongly antagonistic against R. solani in in vitro studies and most of them were spore type- dependent and originated from G. intraradices spores. Occurrence of AMB taxa was also plant host-dependent but antagonism was not. -
Redalyc.A REVIEW on BENEFICIAL EFFECTS of RHIZOSPHERE BACTERIA on SOIL NUTRIENT AVAILABILITY and PLANT NUTRIENT UPTAKE
Revista Facultad Nacional de Agronomía - Medellín ISSN: 0304-2847 [email protected] Universidad Nacional de Colombia Colombia Osorio Vega, Nelson Walter A REVIEW ON BENEFICIAL EFFECTS OF RHIZOSPHERE BACTERIA ON SOIL NUTRIENT AVAILABILITY AND PLANT NUTRIENT UPTAKE Revista Facultad Nacional de Agronomía - Medellín, vol. 60, núm. 1, 2007, pp. 3621-3643 Universidad Nacional de Colombia Medellín, Colombia Available in: http://www.redalyc.org/articulo.oa?id=179914076001 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative A REVIEW ON BENEFICIAL EFFECTS OF RHIZOSPHERE BACTERIA ON SOIL NUTRIENT AVAILABILITY AND PLANT NUTRIENT UPTAKE Nelson Walter Osorio Vega 1 ______________________________________________________________________ ABSTRACT This paper is a review of the benefits of rhizosphere bacteria on plant nutrition. The interaction between plant and phosphate-solubilizing- bacteria is explained in more detail and used as model to illustrate the role that rhizosphere bacteria play on soil nutrient availability. Environmental conditions of rhizosphere and mycorrhizosphere are also discussed. Plants can release carbohydrates, aminoacids, lipids, and vitamins trough their roots to stimulate microorganisms in the soil. The soil volume affected by these root exudates, aproximately 2 mm from the root surface, is termed rhizosphere. Rhizosphere bacteria participate in the geochemical cycling of nutrients and determine their availability for plants and soil microbial community. For instance, in the rhizosphere there are organisms able to fix N 2 forming specialized structures (e.g., Rhizobium and related genera) or simply establishing associative relationships (e.g. -
<I>Mucorales</I>
Persoonia 30, 2013: 57–76 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X666259 The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies K. Hoffmann1,2, J. Pawłowska3, G. Walther1,2,4, M. Wrzosek3, G.S. de Hoog4, G.L. Benny5*, P.M. Kirk6*, K. Voigt1,2* Key words Abstract The Mucorales (Mucoromycotina) are one of the most ancient groups of fungi comprising ubiquitous, mostly saprotrophic organisms. The first comprehensive molecular studies 11 yr ago revealed the traditional Mucorales classification scheme, mainly based on morphology, as highly artificial. Since then only single clades have been families investigated in detail but a robust classification of the higher levels based on DNA data has not been published phylogeny yet. Therefore we provide a classification based on a phylogenetic analysis of four molecular markers including the large and the small subunit of the ribosomal DNA, the partial actin gene and the partial gene for the translation elongation factor 1-alpha. The dataset comprises 201 isolates in 103 species and represents about one half of the currently accepted species in this order. Previous family concepts are reviewed and the family structure inferred from the multilocus phylogeny is introduced and discussed. Main differences between the current classification and preceding concepts affects the existing families Lichtheimiaceae and Cunninghamellaceae, as well as the genera Backusella and Lentamyces which recently obtained the status of families along with the Rhizopodaceae comprising Rhizopus, Sporodiniella and Syzygites. Compensatory base change analyses in the Lichtheimiaceae confirmed the lower level classification of Lichtheimia and Rhizomucor while genera such as Circinella or Syncephalastrum completely lacked compensatory base changes. -
A Summary Report of Useful Information on Mycorrhiza Fungi Gathered for UK Growers
A Summary report of useful Information on Mycorrhiza fungi gathered for UK Growers Eighth International Conference of Mycorrhiza (ICOM8) August 3-7, 2015 Flagstaff, Arizona, USA Benjamin Langendorf East Malling Research, East Malling, Kent 1 Background and introduction The 8th International Conference on Mycorrhiza (ICOM8) took place from 3-7 August 2015 in Flagstaff, Arizona, in the southwest of the United States. It was organized by Northern Arizona University (NAU) under the auspices of the International Mycorrhiza Society. The theme of this conference was "Mycorrhizal integration across continents and scales". The main goal of ICOM8 was to find common interests that transcend national borders and scientific disciplines, and to stimulate a productive exchange of information and ideas among mycorrhizal researchers from around the world, including physiologists, geneticists, taxonomists, ecologists, inoculum producers, and land managers. Mycorrhiza is the most common underground symbiosis and is present in 92% of plant families studied (80% of species), with arbuscular mycorrhizas being the predominant form. This relationship consists in the colonisation of plant roots by the micro-organism and the creation of a site of nutrient exchange. Plants receive mineral nutrients such as inorganic phosphates and mineral or organic nitrogen. In return the plants provide carbohydrates to the mycorrhizal fungi. Beneficial microorganisms associations with plant roots contribute to sustainable horticulture and agriculture, including protected crops. Most agricultural crops could perform better and are more productive when well-colonised by mycorrhizal fungi. Many researches have highlighted the fact that mycorrhiza can help plants to overcome replanting stresses more successfully, to cope with conditions such as draught or high levels of salt, and to increase pest and/or disease resistance. -
Molecular Identification of Fungi
Molecular Identification of Fungi Youssuf Gherbawy l Kerstin Voigt Editors Molecular Identification of Fungi Editors Prof. Dr. Youssuf Gherbawy Dr. Kerstin Voigt South Valley University University of Jena Faculty of Science School of Biology and Pharmacy Department of Botany Institute of Microbiology 83523 Qena, Egypt Neugasse 25 [email protected] 07743 Jena, Germany [email protected] ISBN 978-3-642-05041-1 e-ISBN 978-3-642-05042-8 DOI 10.1007/978-3-642-05042-8 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2009938949 # Springer-Verlag Berlin Heidelberg 2010 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: WMXDesign GmbH, Heidelberg, Germany, kindly supported by ‘leopardy.com’ Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Dedicated to Prof. Lajos Ferenczy (1930–2004) microbiologist, mycologist and member of the Hungarian Academy of Sciences, one of the most outstanding Hungarian biologists of the twentieth century Preface Fungi comprise a vast variety of microorganisms and are numerically among the most abundant eukaryotes on Earth’s biosphere. -
Discovery of Novel Microbial Strains & the Impact of the Nagoya Protocol
EXPERTS MEETING Discovery of Novel Microbial Strains & the Impact of the Nagoya Protocol Organized by BaseClear Thursday November 24th, 2020 All times are Central European Time (CET) AGENDA BaseClear hosts Chair: Dr. Radhika Bongoni & Dr. Derek Butler Derek Butler Radhika Bongoni Derek is the commercial director of BaseClear. Radhika is Business Developer at BaseClear, SESSION 1: DISCOVERY OF NOVEL MICROBIAL STRAINS Derek completed a bachelor’s degree in with focus on markets for application of microbial Start at 10.30 Biotechnology at Dublin City University in 1995, genomics in food, feed and pharma industries. • Unlock: An open large-scale infrastructure for exploring new horizons specialising in Genetics and Immunology. He Radhika received her Ph.D. in Food technology for research on microbial communities continued his studies at University College Cork (2014) from Wageningen University & Research Dr. Peter Schaap | Associate Professor, WUR and in 2001 received his PhD degree for work on (the Netherlands) and an MBA (2015) from Tias • Expanding the metagenomics toolbox for novel enzyme and bioactive the genetic regulation of lactic acid bacteria. In the School for Business & Society (the Netherlands). compound discovery and production same year he took up a post-doctoral position at With techno-commercial expertise, she is involved Dr. Alexander Wentzel | Senior researcher, SINTEF the University of Groningen where his work focused in business growth and market penetration by • The importance of culturomics for unraveling microbial life in extreme environments on the identification of novel enzymatic activities fostering relationships with partners. Prior to Dr. Aleksandrina Patyshakuliyeva | Product Manager – BaseClear from thermophilic bacteria. In 2004 Derek joined BaseClear, Radhika was responsible for establishing Lactrys where he worked on vaccine development dietary supplements market in western Europe, SESSION 2: THE NAGOYA PROTOCOL AND RE-CLASSIFICATION OF STRAINS in probiotic bacteria before joining BaseClear in India, South Africa and Russia. -
<I>Mucor Hiemalis</I>
MYCOTAXON Volume 111, pp. 75–85 January–March 2010 Taxonomic position of Mucor hiemalis f. luteus J. Budziszewska, J. Piątkowska & M. Wrzosek [email protected] Department of Systematics and Plant Geography, University of Warsaw al. Ujazdowskie 4, 00-478 Warsaw, Poland Abstract – The taxonomic position of isolates described by Schipper in 1973 as Mucor hiemalis f. luteus, nom. inval., was reevaluated using morphological and molecular data. Based on these data, we propose to validate this taxon at specific rank, as M. luteus. A complete taxonomic description is given and a diagnostic signature sequence is indicated. Key words – Mucorales, endophytes, phylogeny, rhizoids Introduction Mucor hiemalis Wehmer 1903 is the most common and the most variable species within this genus (Schipper 1973). Representatives of this species are frequent soil-borne fungi but they can also be isolated as saprotrophs or parasites from plant material and animals (Costa et al. 1990). Schipper (1973) reexamined the M. hiemalis complex and described M. hiemalis as one species with four forms: M. hiemalis f. corticola (Hagem) Schipper 1973, M. hiemalis Wehmer 1903 f. hiemalis, M. hiemalis f. luteus (Linnem.) Schipper 1973, and M. hiemalis f. silvaticus (Hagem) Schipper 1973. Although f. luteus is invalid because it lacks a Latin diagnosis (McNeill et al. 2006: Art. 36.1), this name is commonly used (Costa et al. 1990). The taxon has also been treated at specific rank (e.g. Mehorta et al. 1966, Zycha et al. 1969, Pei 2000), either as M. luteus Linnem. 1936 (nom. inval.; McNeill et al. 2006: Art. 36.1) or as M. -
The Effects of Tetracycline Residues on the Microbial Community Structure of Tobacco Soil in Pot Experiment
www.nature.com/scientificreports OPEN The Efects of Tetracycline Residues on the Microbial Community Structure of Tobacco Soil in Pot Experiment Jiayu Zheng1, Jixu Zhang1,3, Lin Gao1, Fanyu Kong1, Guoming Shen1, Rui Wang2, Jiaming Gao2 & Jiguang Zhang1 ✉ To evaluate the micro-ecological efects of tetracycline residues on tobacco soil, high-throughput sequencing technology was used to study the efects of the addition of diferent concentrations (0, 5, 50, and 500 mg·kg−1) of tetracycline on the abundance, diversity, and structure of bacterial and fungal communities in the rhizosphere and non-rhizosphere soil of fue-cured tobacco in China. Results showed that the presence of tetracycline had an important but varying efect on soil bacterial and fungal community richness, diversity, and structure. Changes in the diversity indices (Chao index and Shannon index) of soil bacterial and fungal communities showed a similar pattern after the addition of tetracycline; however, a few diferences were found in the efects of tetracycline in the rhizosphere and non-rhizosphere soil, suggesting an evident rhizosphere-specifc efect. The bacterial community at the phylum level in the rhizosphere closely clustered into one group, which might be the result of tobacco root secretions and rhizodeposition. Tetracycline showed a concentration-dependent efect on the soil bacterial community structure. The soil bacterial community structures observed after treatments with higher concentrations of tetracycline (50 and 500 mg·kg−1) were found to be closely related. Moreover, the efects of the treatments with higher concentrations of tetracycline, on the soil bacterial community at the phylum level, were diferent from those with lower concentrations of tetracycline (5 mg·kg−1), and CK treatments. -
UMC Utrecht Research Evaluation
UMC Utrecht Research Evaluation 2013-2018 Table of contents UMC Utrecht research Self-evaluation report 3 Self-evaluation strategic research program Brain 33 Self-evaluation report strategic research program Cancer 82 Self-evaluation report strategic research program Child Health 150 Self-evaluation report strategic research program Circulatory Health 218 Self-evaluation report strategic research program Infection & Immunity 294 Self-evaluation report strategic research program Regenerative Medicine & Stem Cells 352 UMC Utrecht research Self-evaluation report (2013-2018) Foreword 5 1. Mission, strategy & general organisation 6 1.1 Mission 6 1.2 Strategy 2015-2020 ‘Connecting U’ 6 1.3 Executive Board 6 1.4 Supervisory Board 6 1.5 Organisation 7 1.6 Governance developments 7 1.7 Patient and public involvement 7 1.8 Educational Research 8 2. Research organisation & key figures 9 2.1 Strategic research programs 9 2.2 Management and responsibilities 10 2.3 Research FTE 11 2.4 Professorships 11 2.5 Diversity 11 2.6 Funding and earning capacity 12 2.7 Facilities 14 2.8 Partners and collaborations 14 3. Research policy & support 17 3.1 Research Office 17 3.2 Support for innovation and funding 17 3.3 Compliance and quality management of clinical research 18 3.4 Integrity 18 3.5 Data management 19 3.6 Open Science 19 3.7 Benchmark: Research evaluation practices at the UMC Utrecht 20 4. PhD programs: Graduate School of Life Sciences 22 4.1 Recruitment, selection & admission 22 4.2 PhD enrolment 22 4.3 PhD training 23 4.4 Supervision 24 4.5 Governance 24 5.