Jon Hill1, Katie E. Davis2, Jaime Tovar2, Matthew A. Wills2

1. Environment Department, University of York, York, UK, 2. Department of Biology and Biochemistry, University of Bath, Bath, UK [email protected] @S_Toolkit

Tinamidae Anseriformes Opisthocomidae Glaucidium gnoma Musophagidae Pastor roseus Glaucidium hardyi Sagittariidae Creatophora cinerea Cathartidae Acridotheres albocinctus Glaucidium nanum Falconidae Glaucidium brasilianum%2 Accipitridae Acridotheres cristatellus Strigidae Acridotheres grandis Glaucidium peruanum Tytonidae Acridotheres javanicus%1 Glaucidium brasilianum%1 Psittacidae Pseudasturidae Acridotheres fuscus Glaucidium tucumanum Acridotheres cinereus Sandcoleidae Acridotheres javanicus%2 Glaucidium bolivianum Coliidae Glaucidium jardinii Passeriformes Acridotheres melanopterus Primoscenidae Acridotheres burmannicus Glaucidium passerinum Trogonidae Acridotheres ginginianus Glaucidium tephronotum Cuculidae Acridotheres tristis Trochilidae Poliopsar sericeus Vireolanius leucotis Apodidae Poliopsar cineraceus Pteruthius rufiventer Hemiprocnidae Temenuchus sinensis Pteruthius annamensis Aegothelidae Pteruthius validirostris Caprimulgidae Temenuchus pagodarum Pteruthius ricketti Nyctibiidae Temenuchus malabaricus Pteruthius aeralatus Pteruthius schauenseei Steatornithidae Temenuchus erythropygius Pteruthius robinsoni Leptosomidae Leucopsar rothschildi Pteruthius cameranoi Podargidae Sturnornis albofrontata Pteruthius ripleyi Brachypteraciidae Pteruthius flaviscapis nigricollis Pteruthius aenobarbus Coraciidae Gracupica contra Pteruthius intermedius Alcedinidae Pteruthius aenobarbulus Meropidae philippensis Pteruthius melanotis Todidae Agropsar sturninus Pteruthius tahanensis Momotidae Sturnus unicolor Pteruthius hybrida Pteruthius pallidus Pici Sturnus vulgaris Pteruthius xanthochlorus Galbulae Pteruthius occidentalis Bucerotidae Vireo cassinii Upupidae Hylophilus ochraceiceps Phoeniculidae Cyclarhis gujanensis Erpornis zantholeuca Messelirrisoridae Pitta sordida Psarisomus dalhousiae Formicarius analis Furnarius leucopus Deconychura longicauda Conopophaga peruviana Thamnophilus caerulescens Myiarchus cinerascens Pipra coronata Procnias nudicollis Porphyrolaema porphyrolaema Entomyzon cyanotis Passer montanus Passer domesticus Motacilla alba Carduelis carduelis Carduelis spinus Coccothraustes coccothraustes Fringilla coelebs Passerella iliaca Emberiza citrinella Thraupis episcopus Ploceus vitellinus Dinemellia dinemelli Vidua macroura Emblema pictum Lonchura cantans Estrilda nonnula Mandingoa nitidula Uraeginthus ianthinogaster Prunella modularis Chloropsis sonnerati Irena puella + Nectarinia cuprea Muscicapa striata Ficedula hypoleuca Erithacus rubecula Luscinia svecica Phoenicurus ochruros Turdus philomelos Turdus merula Catharus guttatus Zoothera naevia Cinclus cinclus Mimus polyglottos Sturnus vulgaris = Troglodytes troglodytes Certhia brachydactyla Sitta europaea Bombycilla garrulus Regulus regulus Sylvia atricapilla Sylvia communis Sylvia nisoria Zosterops senegalensis Garrulax sannio Hypsipetes philippinus Pycnonotus leucogenys Pycnonotus xanthopygos Phylloscopus trochilus Delichon urbica All trees and meta-data from the Locustella naevia Hippolais icterina Acrocephalus dumetorum Alauda arvensis Parus palustris Parus caeruleus Parus major literature is entered into the STK Parus cristatus Chaetops aurantius Picathartes oreas Picathartes gymnocephalus Oriolus chinensis Vireo cassinii Gymnorhina tibicen Manucodia keraudrenii via a GUI. The data is stored as Cyanocitta stelleri Pica pica Corvus corax Corvus corone an XML file (Phyml) and is ready All trees in the literature are digitised for processing. Source trees are collected from the literature. Any tree can be used, regardless of the data used to create it. Process data

A Taxa Equivalents Status Artemia_franciscana Artemia_franciscana green Pastor roseus G Creatophora cinerea Acridotheres grandis Drosophila_pseudoobscura Drosophila_pseudoobscura green Acridotheres cristatellus E Acridotheres albocinctus Euphausia_americana Euphausia_americana green Acridotheres javanicus%1 AcridotheresPastor fuscus roseus Euphausia_australis Euphausia_australis red F AcridotheresCreatophora cinereus cinerea AcridotheresAcridotheres javanicus%2 albocinctus Euphausia_brevis_Atlantic Euphausia_brevis_Atlantic red AcridotheresAcridotheres melanopterus cristatellus D AcridotheresAcridotheres burmannicus grandis Euphausia_brevis_Pacific Euphausia_brevis_Pacific red AcridotheresAcridotheres ginginianus javanicus%1 H AcridotheresAcridotheres tristis fuscus Euphausia_crsytallorophias Euphausia_crsytallorophias red Poliopsar sericeusAcridotheresPastor cinereus roseus + Poliopsar cineraceusAcridotheresCreatophora javanicus%2 cinerea Euphausia_crystallorophias Euphausia_crystallorophias green TemenuchusAcridotheres sinensisAcridotheres melanopterus albocinctus TemenuchusAcridotheres pagodarumAcridotheres burmannicus cristatellus Euphausia_diomedea Euphausia_diomedea red TemenuchusAcridotheres malabaricusAcridotheres ginginianus grandis TemenuchusAcridotheres erythropygiusAcridotheres tristis javanicus%1 Euphausia_distinguenda Euphausia_distinguenda green Leucopsar PoliopsarrothschildiAcridotheres sericeus fuscus G Sturnornis PoliopsaralbofrontataAcridotheres cineraceus cinereus Euphausia_eximia Euphausia_eximia green Gracupica nigricollisTemenuchusAcridotheres sinensis javanicus%2 Gracupica contraTemenuchusAcridotheres pagodarum melanopterus Euphausia_frigida Euphausia_frigida green A Agropsar philippensisTemenuchusAcridotheres malabaricus burmannicus A Permute trees Agropsar sturninusTemenuchusAcridotheres erythropygius ginginianus Euphausia_gibboides Euphausia_gibboides green Sturnus unicolorLeucopsarAcridotheres rothschildi tristis E Sturnus vulgarisSturnornisPoliopsar albofrontata sericeus Euphausia_hemigibba Euphausia_hemigibba green GracupicaPoliopsar nigricollis cineraceus E%1 GracupicaTemenuchus contra sinensis Euphausia_krohni Euphausia_krohni green F AgropsarTemenuchus philippensis pagodarum AgropsarTemenuchus sturninus malabaricus Sturnus Temenuchusunicolor erythropygius Euphausia_lamelligera Euphausia_lamelligera green G%1 D Sturnus Leucopsarvulgaris rothschildi Sturnornis albofrontata Euphausia_longirostris Euphausia_longirostris green Gracupica nigricollis G%2 H Gracupica contra Euphausia_lucens Euphausia_lucens green Agropsar philippensis Agropsar sturninus Euphausia_mutica Euphausia_mutica green Sturnus unicolor E%2 Sturnus vulgaris Euphausia_pacifica Euphausia_pacifica green E Euphausia_sibogae Euphausia_sibogae green F Pastor roseus Euphausia_similis Euphausia_similis green Creatophora cinerea A Acridotheres albocinctus Euphausia_superba Euphausia_superba green Acridotheres cristatellus Acridotheres grandis Euphausia_tenera Euphausia_tenera green D G Acridotheres javanicus%1 Acridotheres fuscus Euphausia_triacantha Euphausia_triacantha green Acridotheres cinereus H F Acridotheres javanicus%2 Euphausia_tricantha Euphausia_tricantha green Acridotheres melanopterus Acridotheres burmannicus Euphausia_vallentini Euphausia_vallentini green D Acridotheres ginginianus E%3 Acridotheres tristis Gonodactylus_sp Gonodactylus_sp. yellow Poliopsar sericeus Poliopsar cineraceus H Temenuchus sinensis Gonodactylus_viridus Gonodactylus_viridis;Gonodactylinus_viridis yellow Temenuchus pagodarum Temenuchus malabaricus Kempina_mikado Kempina_mikado green Temenuchus erythropygius Leucopsar rothschildi Litopenaeus_vannamei Litopenaeus_vannamei green Sturnornis albofrontata Gracupica nigricollis Meganyctiphanes_norvegica Meganyctiphanes_norvegica green Gracupica contra Agropsar philippensis A Agropsar sturninus Sturnus unicolor E Sturnus vulgaris G F D H OTUs in the source data need to have Source trees need to have at least two Non-monophyletic taxa (such as sub-) need to All source trees included in the final supertree consistant nomenclature. Synonyms, higher- OTUs in common with another source tree be removed. All permutations of possible positions are must be independant of each other. The taxa and level taxa need to replaced and names to be included in the supertree analysis. calculated and a mini-supertree representing the characters used to create the source trees are standardised. We use online resources to do The red circles and the two unconnected uncertianty can be used as a source tree instead. examined and duplicates and overlaps can be this as automatically as possible discarded circles above should be removed.

Supertree

Anomura

847 OTUs 60 source trees

Brachynauphoetafoulpointeensis

Gromphadorhinaoblongonota

Gromphadorhinagrandidieri Gromphadorhinaportentosa

Henschoutedeniaflexivitta

Princisiavanwaerebeki

Leozehntneramaxima

Heminauphoetasp. 1 punctataDiploptera Elliptorhinachopardi Aeluropodainsignis

Pseudocalolampra Rhyparobiamaderae Henschoutedeniasp. B

Pseudomopsoblongata Nauphoetacinerea Elliptorhinasp. l Pseudomopssp. 2 Xestoblattacavicola Pseudomopssp. 1 Panchloraviridis Panchloranivea a Nauphoetasp.

Paratemnopteryx couloniana Xestoblattasp. 1 Ischnoptera sp. 2 Blattella germanicaIschnoptera sp. 3 t Ischnoptera sp. 1

Loboptera decipiensBlattella lituricollisBlattella asahinai t Paratemnopteryx sp.

Symploce yayeyamana Princisaria Paraprincisaria Alloblatta Gyna capucina Gyna lurida Gyna caffrorum Neorhicnoda Lobopterella dimidiatipes Diplopterinae a Panchlora sp. 1 Hyporhicnoda Panchlora azteca Paradicta rotunda Blattella vaga Blaptica dubia Blaptica sp. Symploce pallens Monachoda Petasodes Byrsotria fumigata Temnopteryx sp. 1 Hemiblabera Eublaberus posticus r Eublaberus distanti Archimandrita tessellata Blaberus giganteus Blaberus discoidalis Nyctibora azteca Blaberus sp. 1 i Blaberus atropos Lucihormetica verrucosa Lucihormetica subcincta a Nyctibora acaciana Brachycola NyctiboraNyctibora lutzi sp. Hormetica sp. 1 Nyctibora sp. 1 Parahormetica Phoetalia sp. Euphyllodromia sp. Phoetalia pallida ParatropesParatropes sp. 1 sp. Thanatophyllum akinetum Achelata Schultesia lampyridiformis Parasphaeria boleiriana EuthlastoblattaBalta longicercata sp. 1 Tribonium Balta cf. similis Zetoborella Zetobora sp. Euthlastoblatta sp. Phortioeca phoraspoides Phortioeca nimbata Supella dimidiata Supella longipalpa Schizopilia Capucina Lanxoblatta emarginata Latiblattella sp. 3 Aptera fusca Laxta sp. NeoblattellaLatiblattella sp. 1 sp. Corydidarum pygmaea Saltoblattella montistabularis Perisphaerus sp. Perisphaerus sp. 1 HemithyrsoceraEctobius histrio pallidus Ectobius sylvestris Pycnoscelus surinamensis Ectobius sp. Hostilia carinata Perisphaeria ruficornis Perisphaeria virescens Nahublattella sp. nr Bantua sp. 1 Perisphaeriinae sp. 1 Anaplecta bivittata Perisphaeria sp. Anaplecta Anaplectalateralis sp. Zuluia sp. Anaplecta decipiens Perisphaeria substylifera Pilema dubia Perisphaeria scabrella AnaplectaAnaplecta calosoma asema Perisphaeria bicolor Euthyrrhapha pacifica Blepharodera discoidalis Cariblatta Epilampra sp. Epilampra azteca Euthyrrhapha sp. Rhabdoblatta formosana Calolampra sp. Holocompsa sp. 1 Calolampra irrorata Tivia sp. 1 Opisthoplatia orientalis Therea petiveriana Miopanesthia deplanata Therea sp. Salganea cavagnaroi Salganea nalepae Eremoblatta Ergaulasubdiaphana capucina Therea sp. 2 Salganea rossi Salganea taylori Polyphaga aegyptiaca Ergaula sp. Salganea inaequaliterspinosa Arenivaga floridensis Salganea foveolata Nocticola australiensis Salganea sp. 303 OTUs Salganea rufipes Nocticola babindaensis Salganea fruhstorferi Nocticola sp. Salganea aperturifera Lamproblatta albipalpus Salganea rugulata Lamproblatta sp. Salganea amboinica Salganea nigrita Salganea obtusespinosa Salganea duffelsi Salganea aequaliterspinosa Salganea guentheri Salganea sutteri Salganea perssoni Salganea matsumotoi sp. nov.2 Salganea matsumotoi sp. nov.1 Salganea incerta Salganea gressitti Salganea esakii Salganea taiwanensis Panesthia transversa Caeparia crenulata 937 OTUs 46 source trees PostsubulitermesDicuspiditermes parviconstrictus rubriceps Panesthia cribrata Panesthia sp. Panesthia angustipennis Amitermes dentatus Panesthia saussurei Drepanotermes rubriceps Panesthia heurni Angularitermes orestes Ancaudellia marshallae Hospitalitermes hospitalis Ancaudellia kheili Nasutitermes takasagoensis Geoscapheus woodwardi Nasutitermes latifrons Macropanesthia rhinoceros Nasutitermes trinervius Macropanesthia heppleorum Armitermes spininotus sp. n. Geoscapheus sp. nov. Macropanesthia kraussiana Armitermes armiger Armitermes bidentatus sp. n. Geoscapheus crenulatus Macropanesthia rothi Armitermes cerradoensis Macropanesthia kinkuna Uncitermes teevani Macropanesthia lithgowae Rhynchotermes nasutissimus Neogeoscapheus barbarae Procornitermes striatus Neogeoscapheus hirsutus Cahuallitermes aduncus Macropanesthia monteithi 75 source trees Cornitermes cumulans Macropanesthia mackerrasae Parapanesthia pearsoni Syntermes dirus Neogeoscapheus dahmsi Labiotermes labralis Macropanesthia saxicola Procornitermes araujoi Parapanesthia gigantea Microcerotermes parvus Archiblatta sp. Syntermes grandis Duchailluia sp. Pseudomicrotermes alboniger Drymaplaneta semivitta Syntermes molestus Drymaplaneta cf. semivitta Mapinguaritermes peruanus Drymaplaneta variegata Mapinguaritermes grandidens Pelmatosilpha guyanae Amitermes amifer Melanozosteria soror Celatoblatta sp. Synhamitermes sp. Celatoblatta vulgaris Protohamitermes globiceps Celatoblatta pallidicauda Orientotermes emersoni Celatoblatta peninsularis Acangaobitermes krishnai Maoriblatta brunni Noirotitermes noitori Celatoblatta montana Macuxitermes triceratops Celatoblatta anisoptera Termes propinquus Celatoblatta quinquemaculata Termes comis Celatoblatta hesperia Termes borneensis Celatoblatta laevispinata Archiblatta hoeveni Dicuspiditermes spinitibialis Catara rugosicollis Dicuspiditermes makhamensis Pseudoderopeltis bimaculata Dicuspiditermes nemorosus Neostylopyga rhombifolia Mirocapritermes latignathus Neostylopyga sp. Procapritermes parasilvaticus Blatta orientalis Sinocapritermes mushae Periplaneta fuliginosa Termes hospes Periplaneta australasiae Procapritermes setiger Periplaneta americana Termes hispaniolae Periplaneta brunnea Inquilinitermes sp. Shelfordella lateralis Pseudoderopeltis flavescens Pericapritermes semarangi Pseudoderopeltis sp. 1 Pericapritermes nitobei Deropeltis cf. erythrocephala Orthotermes depressifrons Deropeltis paulinoi Ophiotermes grandilabius Deropeltis integerrima Cubitermes fungifaber Deropeltis atra Deropeltis cf. paulinoi Thoracotermes macrothorax Aves Globitermes sulphureus Deropeltis sp. 1 Deropeltis sp. Foraminitermes tubifrons Microcerotermes sp. Pseudoderopeltis foveolata Silvestritermes lanei Eupolyphaga sinensis Tryonicus sp. Tryonicus sp. 1 SilvestritermesSilvestritermes duende gnomus sp. n. Tryonicus parvus Tryonicus sp. 2 SilvestritermesSilvestritermes euamignathus homgreni Lauraesilpha angusta Lauraesilpha chazeaui CurvitermesCyrilliotermes odontognathus cupim Lauraesilpha sp Tryonicus vicina Paracurvitermes manni Lauraesilpha sp. 1 EmbiratermesIbitermes festivellus curupira Lauraesilpha sp. 3 Lauraesilpha koghiensis NeocapritermesEuhamitermes opacus sp. Lauraesilpha heteroclita Lauraesilpha dogniensis Lauraesilpha do Amitermes sp. MicrocerotermesAstalotermes strunckii quietus Lauraesilpha sp. Eburnitermes sp. Lauraesilpha unio Lauraesilpha sp. 4 Nasutitermes similis Lauraesilpha mearetoi Lauraesilpha vulcania Nasutitermes guayanae Lauraesilpha sp. 2 Nasutitermes wheeleri Lauraesilpha sp. 5 Nasutitermes obscurus Lauraesilpha antiqua relictus Nasutitermes unduliceps Cryptocercus kyebangensis Nasutitermes johoricus Cryptocercus clevelandi BulbitermesLacessititermes parapusillus sp. Cryptocercus punctulatus Family Key Cryptocercus garciai Cryptocercus darwini 6326 OTUs Longipeditermes longipes Cryptocercus primarius Cryptocercus matilei Hospitalitermes ataramensis Cryptocercus wrighti Bulbitermes makhamensis Mastotermes darwiniensis MacrognathotermesBulbitermes laticephalus errator Porotermes adamsoni Hodotermopsis japonica Drepanotermes sp. Hodotermopsis sjostedti Nasutitermes perparvus Stolotermes brunneicornis Havilanditermes proatripennis Porotermes sp. Anacanthotermes ochraceus NasutitermesGrigiotermes callimorphus metoecus Hodotermes mossambicus Microhodotermes viator Mastotermitidae Ateuchotermes sentosus Stolotermes inopinus Porotermes quadricollis Archotermopsis wroughtoni AmalotermesSpeculitermes phaeocephalus rongrensis angusticollis Nasutitermes sp. Zootermopsis nevadensis Hodotermitidae Kalotermes pallidinotum Nasutitermes intermedius Kalotermes flavicollis NasutitermesNasutitermes matangensiformis coxipoensis Calcaritermes temnocephalus Nasutitermes ephratae Neotermes holmgreni Nasutitermes corniger Postelectrotermes howa Glyptotermes iridipennis Nasutitermes acajutlae Cryptotermes queenslandis Neotermes insularis Nasutitermes acangussu Bifiditermes improbus Nasutitermes walkeri Cryptotermes brevis Velocitermes sp. Procryptotermes leewardensis NasutitermesNasutitermes surinamensis octopilis Incisitermes tabogae Incisitermes immigrans Cryptotermes thailandis Prorhinotermes tibiaoensiformis 1036 source trees Psammotermes voeltzkowi Psammotermes allocerus Aciculitermes maymyoensis Dolichorhinotermes longilabius Termitogeton sp. Tumulitermes westraliensis Prorhinotermes canalifrons Parrhinotermes microdentiformis Nasutitermes bikpelanus Schedorhinotermes medioobscurus Schedorhinotermes lamanianus EmbiratermesNasutitermesCornitermes chagresi triodiae walkeri Schedorhinotermes putorius Reticulitermes speratus ConstrictotermesMicrocerotermes cyphergaster newmani Reticulitermesflavipes Reticulitermessantonensis Reticulitermesvirginicus Reticulitermeshageni Labidotermes sp. Heterotermesconvexinotatus Heterotermestenuis Nasutitermes longinasus Heterotermessp. Cryptocercidae Heterotermesvagus Nasutitermes voeltzkowi Coptotermessjoestedti Coptotermestestaceus Coptotermesniger Coptotermestruncatus Coptotermesheimi Coptotermesgestroi Coptotermesvastator Coptotermescurvignathus Coptotermeskalshoveni Trinervitermes togoensis Coptotermessepangensis Coptotermesfrenchi Coptotermeslacteus CoptotermesA2sp. Trinervitermes occidentalis CoptotermesA1sp. Coptotermes sp. Coptotermes Coptotermesbrunneus NoditermesTermes sp. fatalis dreghorni Coptotermes Coptotermesmichaelseni Lamproblattidae Cubitermes sp. TrinervitermesTrinervitermes oeconomus geminatus Fulleritermes tenebricus Procubitermes sp. Amitermes heterognathus

Microcerotermes paracelebensis Speculitermes sp. Anoplotermes sp. Protohamitermes sp. Microcerotermes annandaleiMicrocerotermes crassus Adaiphrotermes sp.

Euhamitermes hamatus

Odontotermes sp. Foraminitermes valens Labritermes emersoni Ancistrotermes sp. Microtermes obesi Macrotermes gilvus Coxotermes boukokoensis

Hypotermes xenotermitis Hypotermes makhamensis

Odontotermes formosanus Macrotermes annandalei

Microtermes congoensis

Macrotermes carbonarius Pseudacanthotermes militaris

Macrotermes malaccensis Ancistrotermes pakistanicus Coptotermes acinaciformis Davis KE, Page RDM. Reweaving the Tapestry: a Supertree Sphaerotermes sphaerothorax I Termopsidae so of . PLOS Currents Tree of Life. 2014 Jun 9 . Edition 1. doi: 10.1371/ ptera currents.tol.c1af68dda7c999ed9f1e4b2d2df7a08e.

Available on: References: Funded by: Hill, J., and Davis, K.E. 2014. The Supertree Toolkit 2: a new and improved software package with a Graphical User Interface for supertree construction. Biodiversity Data Built using: Journal 2: e1053. DOI: 10.3897/BDJ.2.e1053

http://www.supertreetoolkit.org Davis, K.E., Hill, J. 2010. The Supertree Toolkit. BMC Research Notes 3:95. DOI:10.1186/1756-0500-3-95