MBE Advance Access published June 27, 2015 Genomic Data from Extinct North American Camelops Revise Camel Evolutionary History Peter D. Heintzman,*,1 Grant D. Zazula,2 James A. Cahill,1 Alberto V. Reyes,3 Ross D.E. MacPhee,4 and Beth Shapiro1,5 1Department of Ecology & Evolutionary Biology, University of California Santa Cruz 2Yukon Palaeontology Program, Department of Tourism & Culture, Government of Yukon, Whitehorse, YT, Canada 3Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton, AB, Canada 4Department of Mammalogy, Division of Vertebrate Zoology, American Museum of Natural History, New York, NY 5UCSC Genomics Institute, University of California Santa Cruz *Corresponding author: E-mail:
[email protected]. Associate editor: Claudia Russo Abstract Recent advances in paleogenomic technologies have enabled an increasingly detailed understanding of the evolutionary relationships of now-extinct mammalian taxa. However, a number of enigmatic Quaternary species have never been characterized with molecular data, often because available fossils are rare or are found in environments that are not optimal for DNA preservation. Here, we analyze paleogenomic data extracted from bones attributed to the late Pleistocene western camel, Camelops cf. hesternus, a species that was distributed across central and western North America until its extinction approximately 13,000 years ago. Despite a modal sequence length of only around 35 base pairs, we reconstructed high-coverage complete mitochondrial genomes and low-coverage partial nuclear genomes for each specimen. We find that Camelops is sister to African and Asian bactrian and dromedary camels, to the exclusion of South American camelids (llamas, guanacos, alpacas, and vicunas).~ These results contradict previous morphology- based phylogenetic models for Camelops, which suggest instead a closer relationship between Camelops and the South American camelids.