Isolation and Purification of Glycoglycerolipids to Induce
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Mitochondrial Metabolism and Cancer
Cell Research (2018) 28:265-280. REVIEW www.nature.com/cr Mitochondrial metabolism and cancer Paolo Ettore Porporato1, *, Nicoletta Filigheddu2, *, José Manuel Bravo-San Pedro3, 4, 5, 6, 7, Guido Kroemer3, 4, 5, 6, 7, 8, 9, Lorenzo Galluzzi3, 10, 11 1Department of Molecular Biotechnology and Health Sciences, Molecular Biotechnology Center, 10124 Torino, Italy; 2Department of Translational Medicine, University of Piemonte Orientale, 28100 Novara, Italy; 3Université Paris Descartes/Paris V, Sorbonne Paris Cité, 75006 Paris, France; 4Université Pierre et Marie Curie/Paris VI, 75006 Paris, France; 5Equipe 11 labellisée par la Ligue contre le Cancer, Centre de Recherche des Cordeliers, 75006 Paris, France; 6INSERM, U1138, 75006 Paris, France; 7Meta- bolomics and Cell Biology Platforms, Gustave Roussy Comprehensive Cancer Institute, 94805 Villejuif, France; 8Pôle de Biologie, Hopitâl Européen George Pompidou, AP-HP, 75015 Paris, France; 9Department of Women’s and Children’s Health, Karolinska University Hospital, 17176 Stockholm, Sweden; 10Department of Radiation Oncology, Weill Cornell Medical College, New York, NY 10065, USA; 11Sandra and Edward Meyer Cancer Center, New York, NY 10065, USA Glycolysis has long been considered as the major metabolic process for energy production and anabolic growth in cancer cells. Although such a view has been instrumental for the development of powerful imaging tools that are still used in the clinics, it is now clear that mitochondria play a key role in oncogenesis. Besides exerting central bioen- ergetic functions, mitochondria provide indeed building blocks for tumor anabolism, control redox and calcium ho- meostasis, participate in transcriptional regulation, and govern cell death. Thus, mitochondria constitute promising targets for the development of novel anticancer agents. -
CATALOG NUMBER: AKR-213 STORAGE: Liquid Nitrogen Note
CATALOG NUMBER: AKR-213 STORAGE: Liquid nitrogen Note: For best results begin culture of cells immediately upon receipt. If this is not possible, store at -80ºC until first culture. Store subsequent cultured cells long term in liquid nitrogen. QUANTITY & CONCENTRATION: 1 mL, 1 x 106 cells/mL in 70% DMEM, 20% FBS, 10% DMSO Background HeLa cells are the most widely used cancer cell lines in the world. These cells were taken from a lady called Henrietta Lacks from her cancerous cervical tumor in 1951 which today is known as the HeLa cells. These were the very first cell lines to survive outside the human body and grow. Both GFP and blasticidin-resistant genes are introduced into parental HeLa cells using lentivirus. Figure 1. HeLa/GFP Cell Line. Left: GFP Fluorescence; Right: Phase Contrast. Quality Control This cryovial contains at least 1.0 × 106 HeLa/GFP cells as determined by morphology, trypan-blue dye exclusion, and viable cell count. The HeLa/GFP cells are tested free of microbial contamination. Medium 1. Culture Medium: D-MEM (high glucose), 10% fetal bovine serum (FBS), 0.1 mM MEM Non- Essential Amino Acids (NEAA), 2 mM L-glutamine, 1% Pen-Strep, (optional) 10 µg/mL Blasticidin. 2. Freeze Medium: 70% DMEM, 20% FBS, 10% DMSO. Methods Establishing HeLa/GFP Cultures from Frozen Cells 1. Place 10 mL of complete DMEM growth medium in a 50-mL conical tube. Thaw the frozen cryovial of cells within 1–2 minutes by gentle agitation in a 37°C water bath. Decontaminate the cryovial by wiping the surface of the vial with 70% (v/v) ethanol. -
Cancer and ER Stress Mutual Crosstalk Between Autophagy
Biomedicine & Pharmacotherapy 118 (2019) 109249 Contents lists available at ScienceDirect Biomedicine & Pharmacotherapy journal homepage: www.elsevier.com/locate/biopha Cancer and ER stress: Mutual crosstalk between autophagy, oxidative stress and inflammatory response T ⁎ Yuning Lina,1, Mei Jiangb,1, Wanjun Chena, Tiejian Zhaoa, Yanfei Weia, a Department of Physiology, Guangxi University of Chinese Medicine, Nanning, Guangxi 530001, China b Department of Anatomy and Neurobiology, Zhongshan School of Medicine, Sun Yat-sen University, #74, Zhongshan No. 2 Road, Guangzhou, 510080, China ARTICLE INFO ABSTRACT Keywords: The endoplasmic reticulum (ER) acts as a moving organelle with many important cellular functions. As the ER Endoplasmic reticulum stress lacks sufficient nutrients under pathological conditions leading to uncontrolled protein synthesis, aggregation of Cancer unfolded/misfolded proteins in the ER lumen causes the unfolded protein response (UPR) to be activated. Autophagy Chronic ER stress produces endogenous or exogenous damage to cells and activates UPR, which leads to im- Oxidative stress paired intracellular calcium and redox homeostasis. The UPR is capable of recognizing the accumulation of Inflammatory unfolded proteins in the ER. The protein response enhances the ability of the ER to fold proteins and causes apoptosis when the function of the ER fails to return to normal. In different malignancies, ER stress can effec- tively induce the occurrence of autophagy in cells because malignant tumor cells need to re-use their organelles to maintain growth. Autophagy simultaneously counteracts ER stress-induced ER expansion and has the effect of enhancing cell viability and non-apoptotic death. Oxidative stress also affects mitochondrial function of im- portant proteins through protein overload. -
How Accurate Are Cancer Cell Lines? Some Argue That Tumour Cells Obtained Directly from Patients Are the Best Way to Study Cancer Genomics
NEWS NATURE|Vol 463|18 February 2010 How accurate are cancer cell lines? Some argue that tumour cells obtained directly from patients are the best way to study cancer genomics. For decades, cancer cell cultures grown in Petri dishes have been the foundation of can- cer biology and the quest for drug treatments. But now that biologists are exploring cancer genomes, some are asking whether they should pursue a more expensive, less proven strategy RF.COM/SPL MEDICAL that may give a truer picture of key muta- tions: sequencing cells from tumours plucked directly from patients. Of the first six cancer genome sequences to be published, three have come from estab- lished cell lines and three from primary tumours. Hundreds more sequences are expected soon, both from individual labs and from major efforts such as the Cancer Genome Atlas in Bethesda, Maryland. And although most researchers continue to have a foot in both camps, the atlas project excludes work on cell lines. The major criticism of cell lines is that not all cancer types can be grown indefinitely in the laboratory. Those that do grow differ genetically from primary tissue, accumulating new mutations as they adapt to their artificial Cultured cancer cells might have different genetic characteristics from in situ tumours. environment. When implanted in rodents, brain-cancer cell lines tend to form a ‘bowling the University of California, Los Angeles, it in the cancer genome, says Stratton. His group ball’ mass of cells rather than infiltrating the will take thousands of comparisons between can then distinguish between segments of the brain like a spider web, as they do in humans, tumour sequences and normal DNA to equal genome that are lost as a result of breakage says Howard Fine, head of neuro-oncology at the benefit of sequencing the top 100 cell lines, from those in which a tumour-suppressing the National Institutes of Health in Bethesda. -
Design and Study of Novel Antimicrobial Peptides with Proline Substitution
Design and Study of Novel Antimicrobial Peptides with Proline Substitution A dissertation presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Doctor of Philosophy Jing He November 2009 © 2009 Jing He. All Rights Reserved. 2 This dissertation titled Design and Study of Novel Antimicrobial Peptides with Proline Substitution by JING HE has been approved for the Department of Chemistry and Biochemistry and the College of Arts and Sciences by John F. Blazyk Professor of Biochemistry Benjamin M. Ogles Dean, College of Arts and Sciences 3 ABSTRACT HE, JING, Ph.D., November 2009, Chemistry Design and Study of Novel Antimicrobial Peptides with Proline Substitution (228 pp.) Director of Dissertation: John F. Blazyk Microorganism-related diseases and their resistance to conventional antibiotics are proliferating at an alarming rate and becoming a severe clinical problem. Therefore, it is urgent to develop novel approaches in antimicrobial therapy. Most living organisms produce and utilize at least some small peptides as part of their defensive system in combating infections by virulent pathogens. Research focusing on the structure and function of these antimicrobial peptides from diverse sources has gained a great number of interests in the past three decades. Generally, many naturally existing antimicrobial peptides are positively charged and have the potential to adopt either amphipathic α-helix or β-sheet conformation. In this project, based on preliminary studies of β-sheet-forming peptides developed in our lab, analogs were designed to investigate the effects of introducing a single leucine-to-proline substitution on the structure and function of the peptides. -
Cholesterol Reduces Pardaxin's Dynamics—A Barrel-Stave Mechanism of Membrane Disruption Investigated by Solid-State NMR
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Biochimica et Biophysica Acta 1798 (2010) 223–227 Contents lists available at ScienceDirect Biochimica et Biophysica Acta journal homepage: www.elsevier.com/locate/bbamem Cholesterol reduces pardaxin's dynamics—a barrel-stave mechanism of membrane disruption investigated by solid-state NMR Ayyalusamy Ramamoorthy ⁎, Dong-Kuk Lee 1, Tennaru Narasimhaswamy 2, Ravi P.R. Nanga Biophysics and Department of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055, USA article info abstract Article history: While high-resolution 3D structures reveal the locations of all atoms in a molecule, it is the dynamics that Received 9 June 2009 correlates the structure with the function of a biological molecule. The complete characterization of Received in revised form 11 August 2009 dynamics of a membrane protein is in general complex. In this study, we report the influence of dynamics on Accepted 15 August 2009 the channel-forming function of pardaxin using chemical shifts and dipolar couplings measured from 2D Available online 28 August 2009 broadband-PISEMA experiments on mechanically aligned phospholipids bilayers. Pardaxin is a 33-residue antimicrobial peptide originally isolated from the Red Sea Moses sole, Pardachirus marmoratus, which Keywords: Dynamic functions via either a carpet-type or barrel-stave mechanism depending on the membrane composition. Our Pardaxin results reveal that the presence of cholesterol significantly reduces the backbone motion and the tilt angle of Membrane orientation the C-terminal amphipathic helix of pardaxin. In addition, a correlation between the dynamics-induced Barrel-stave heterogeneity in the tilt of the C-terminal helix and the membrane disrupting activity of pardaxin by the Antimicrobial peptide barrel-stave mechanism is established. -
Tissue-Specific Delivery of CRISPR Therapeutics
International Journal of Molecular Sciences Review Tissue-Specific Delivery of CRISPR Therapeutics: Strategies and Mechanisms of Non-Viral Vectors Karim Shalaby 1 , Mustapha Aouida 1,* and Omar El-Agnaf 1,2,* 1 Division of Biological and Biomedical Sciences (BBS), College of Health & Life Sciences (CHLS), Hamad Bin Khalifa University (HBKU), Doha 34110, Qatar; [email protected] 2 Neurological Disorders Research Center, Qatar Biomedical Research Institute (QBRI), Hamad Bin Khalifa University (HBKU), Doha 34110, Qatar * Correspondence: [email protected] (M.A.); [email protected] (O.E.-A.) Received: 12 September 2020; Accepted: 27 September 2020; Published: 5 October 2020 Abstract: The Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) genome editing system has been the focus of intense research in the last decade due to its superior ability to desirably target and edit DNA sequences. The applicability of the CRISPR-Cas system to in vivo genome editing has acquired substantial credit for a future in vivo gene-based therapeutic. Challenges such as targeting the wrong tissue, undesirable genetic mutations, or immunogenic responses, need to be tackled before CRISPR-Cas systems can be translated for clinical use. Hence, there is an evident gap in the field for a strategy to enhance the specificity of delivery of CRISPR-Cas gene editing systems for in vivo applications. Current approaches using viral vectors do not address these main challenges and, therefore, strategies to develop non-viral delivery systems are being explored. Peptide-based systems represent an attractive approach to developing gene-based therapeutics due to their specificity of targeting, scale-up potential, lack of an immunogenic response and resistance to proteolysis. -
Molecular Evolutionary Analysis of Plastid Genomes in Nonphotosynthetic Angiosperms and Cancer Cell Lines
The Pennsylvania State University The Graduate School Department or Biology MOLECULAR EVOLUTIONARY ANALYSIS OF PLASTID GENOMES IN NONPHOTOSYNTHETIC ANGIOSPERMS AND CANCER CELL LINES A Dissertation in Biology by Yan Zhang 2012 Yan Zhang Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Dec 2012 The Dissertation of Yan Zhang was reviewed and approved* by the following: Schaeffer, Stephen W. Professor of Biology Chair of Committee Ma, Hong Professor of Biology Altman, Naomi Professor of Statistics dePamphilis, Claude W Professor of Biology Dissertation Adviser Douglas Cavener Professor of Biology Head of Department of Biology *Signatures are on file in the Graduate School iii ABSTRACT This thesis explores the application of evolutionary theory and methods in understanding the plastid genome of nonphotosynthetic parasitic plants and role of mutations in tumor proliferations. We explore plastid genome evolution in parasitic angiosperms lineages that have given up the primary function of plastid genome – photosynthesis. Genome structure, gene contents, and evolutionary dynamics were analyzed and compared in both independent and related parasitic plant lineages. Our studies revealed striking similarities in changes of gene content and evolutionary dynamics with the loss of photosynthetic ability in independent nonphotosynthetic plant lineages. Evolutionary analysis suggests accelerated evolution in the plastid genome of the nonphotosynthetic plants. This thesis also explores the application of phylogenetic and evolutionary analysis in cancer biology. Although cancer has often been likened to Darwinian process, very little application of molecular evolutionary analysis has been seen in cancer biology research. In our study, phylogenetic approaches were used to explore the relationship of several hundred established cancer cell lines based on multiple sequence alignments constructed with variant codons and residues across 494 and 523 genes. -
Mitochondrial Metabolism in Carcinogenesis and Cancer Therapy
cancers Review Mitochondrial Metabolism in Carcinogenesis and Cancer Therapy Hadia Moindjie 1,2, Sylvie Rodrigues-Ferreira 1,2,3 and Clara Nahmias 1,2,* 1 Inserm, Institut Gustave Roussy, UMR981 Biomarqueurs Prédictifs et Nouvelles Stratégies Thérapeutiques en Oncologie, 94800 Villejuif, France; [email protected] (H.M.); [email protected] (S.R.-F.) 2 LabEx LERMIT, Université Paris-Saclay, 92296 Châtenay-Malabry, France 3 Inovarion SAS, 75005 Paris, France * Correspondence: [email protected]; Tel.: +33-142-113-885 Simple Summary: Reprogramming metabolism is a hallmark of cancer. Warburg’s effect, defined as increased aerobic glycolysis at the expense of mitochondrial respiration in cancer cells, opened new avenues of research in the field of cancer. Later findings, however, have revealed that mitochondria remain functional and that they actively contribute to metabolic plasticity of cancer cells. Understand- ing the mechanisms by which mitochondrial metabolism controls tumor initiation and progression is necessary to better characterize the onset of carcinogenesis. These studies may ultimately lead to the design of novel anti-cancer strategies targeting mitochondrial functions. Abstract: Carcinogenesis is a multi-step process that refers to transformation of a normal cell into a tumoral neoplastic cell. The mechanisms that promote tumor initiation, promotion and progression are varied, complex and remain to be understood. Studies have highlighted the involvement of onco- genic mutations, genomic instability and epigenetic alterations as well as metabolic reprogramming, Citation: Moindjie, H.; in different processes of oncogenesis. However, the underlying mechanisms still have to be clarified. Rodrigues-Ferreira, S.; Nahmias, C. Mitochondria are central organelles at the crossroad of various energetic metabolisms. -
Human Mitochondrial Peptide Deformylase, a New Anticancer Target of Actinonin-Based Antibiotics Mona D
Research article Human mitochondrial peptide deformylase, a new anticancer target of actinonin-based antibiotics Mona D. Lee,1,2 Yuhong She,1 Michael J. Soskis,3 Christopher P. Borella,4 Jeffrey R. Gardner,1 Paula A. Hayes,1 Benzon M. Dy,1 Mark L. Heaney,5 Mark R. Philips,3 William G. Bornmann,4 Francis M. Sirotnak,1,2 and David A. Scheinberg1,2,5 1Department of Molecular Pharmacology and Chemistry, Memorial Sloan-Kettering Cancer Center, New York, New York, USA. 2Department of Pharmacology, Weill Graduate School of Medical Sciences of Cornell University, New York, New York, USA. 3Department of Medicine, New York University School of Medicine, New York, New York, USA. 4Organic Synthesis Core Facility, and 5Department of Medicine, Memorial Sloan-Kettering Cancer Center, New York, New York, USA. Peptide deformylase activity was thought to be limited to ribosomal protein synthesis in prokaryotes, where new peptides are initiated with an N-formylated methionine. We describe here a new human peptide defor- mylase (Homo sapiens PDF, or HsPDF) that is localized to the mitochondria. HsPDF is capable of removing formyl groups from N-terminal methionines of newly synthesized mitochondrial proteins, an activity previ- ously not thought to be necessary in mammalian cells. We show that actinonin, a peptidomimetic antibiotic that inhibits HsPDF, also inhibits the proliferation of 16 human cancer cell lines. We designed and synthesized 33 chemical analogs of actinonin; all of the molecules with potent activity against HsPDF also inhibited tumor cell growth, and vice versa, confirming target specificity. Small interfering RNA inhibition of HsPDF protein expression was also antiproliferative. -
Effect of Erufosine on Membrane Lipid Order in Breast Cancer Cell Models
biomolecules Article Effect of Erufosine on Membrane Lipid Order in Breast Cancer Cell Models 1, 1, 2 1 Rumiana Tzoneva y, Tihomira Stoyanova y, Annett Petrich , Desislava Popova , Veselina Uzunova 1 , Albena Momchilova 1 and Salvatore Chiantia 2,* 1 Bulgarian Academy of Sciences, Institute of Biophysics and Biomedical Engineering, 1113 Sofia, Bulgaria; [email protected] (R.T.); [email protected] (T.S.); [email protected] (D.P.); [email protected] (V.U.); [email protected] (A.M.) 2 Institute of Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Street 24-25, 14476 Potsdam, Germany; [email protected] * Correspondence: [email protected]; Tel.: +49-331-9775872 These author contribute equally to this work. y Received: 2 April 2020; Accepted: 19 May 2020; Published: 22 May 2020 Abstract: Alkylphospholipids are a novel class of antineoplastic drugs showing remarkable therapeutic potential. Among them, erufosine (EPC3) is a promising drug for the treatment of several types of tumors. While EPC3 is supposed to exert its function by interacting with lipid membranes, the exact molecular mechanisms involved are not known yet. In this work, we applied a combination of several fluorescence microscopy and analytical chemistry approaches (i.e., scanning fluorescence correlation spectroscopy, line-scan fluorescence correlation spectroscopy, generalized polarization imaging, as well as thin layer and gas chromatography) to quantify the effect of EPC3 in biophysical models of the plasma membrane, as well as in cancer cell lines. Our results indicate that EPC3 affects lipid–lipid interactions in cellular membranes by decreasing lipid packing and increasing membrane disorder and fluidity. As a consequence of these alterations in the lateral organization of lipid bilayers, the diffusive dynamics of membrane proteins are also significantly increased. -
Cell and Tissue Polarity As a Non-Canonical Tumor Suppressor
Commentary 1141 Cell polarity and cancer – cell and tissue polarity as a non-canonical tumor suppressor Minhui Lee1,2 and Valeri Vasioukhin1,3,* 1Division of Human Biology, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave N., C3-168, Seattle, WA 98109, USA 2Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98109, USA 3Department of Pathology and Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA 98195, USA *Author for correspondence (e-mail: [email protected]) Accepted 19 February 2008 Journal of Cell Science 121, 1141-1150 Published by The Company of Biologists 2008 doi:10.1242/jcs.016634 Summary Correct establishment and maintenance of cell polarity is and differentiation of cancer stem cells. Data from in vivo and required for the development and homeostasis of all three-dimensional (3D) cell-culture models demonstrate that metazoans. Cell-polarity mechanisms are responsible not only tissue organization attenuates the phenotypic outcome of for the diversification of cell shapes but also for regulation of oncogenic signaling. We suggest that polarized 3D tissue the asymmetric cell divisions of stem cells that are crucial for organization uses cell-cell and cell-substratum adhesion their correct self-renewal and differentiation. Disruption of cell structures to reinforce and maintain the cell polarity of pre- polarity is a hallmark of cancer. Furthermore, recent evidence cancerous cells. In this model, polarized 3D tissue organization indicates that loss of cell polarity is intimately involved in functions as a non-canonical tumor suppressor that prevents cancer: several crucial cell-polarity proteins are known proto- the manifestation of neoplastic features in mutant cells and, oncogenes or tumor suppressors, basic mechanisms of cell ultimately, suppresses tumor development and progression.