Title an Electron Microscope Study on the Peg-Like Predacious
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Temperature-Dependence of Predator-Prey Dynamics in Interactions Between the Predatory Fungus Lecophagus Sp
Microb Ecol (2018) 75:400–406 DOI 10.1007/s00248-017-1060-5 ENVIRONMENTAL MICROBIOLOGY Temperature-Dependence of Predator-Prey Dynamics in Interactions Between the Predatory Fungus Lecophagus sp. and Its Prey L. inermis Rotifers Edyta Fiałkowska 1 & Agnieszka Pajdak-Stós 1 Received: 2 June 2017 /Accepted: 22 August 2017 /Published online: 30 September 2017 # The Author(s) 2017. This article is an open access publication Abstract Temperature is considered an important factor that strongly limiting factor for the fungus. Moderate temperatures influences the bottom-up and top-down control in water hab- ensure the most stable coexistence of the fungus and its prey, itats. We examined the influence of temperature on specific whereas the highest temperature can promote the prevalence predatory-prey dynamics in the following two-level trophic of the predator. system: the predatory fungus Lecophagus sp. and its prey Lecane inermis rotifers, both of which originated from acti- Keywords Hyphomycetes . Conidia . Top-down control . vated sludge obtained from a wastewater treatment plant Activated sludge . Wastewater treatment (WWTP). The experiments investigating the ability of conidia to trap rotifers and the growth of fungal mycelium were per- formed in a temperature range that is similar to that in Introduction WWTPs in temperate climate. At 20 °C, 80% of the conidia trapped the prey during the first 24 h, whereas at 8 °C, no Predacious fungi are an ecological group comprising different conidium was successful. The mycelium growth rate was the phylla, such as Ascomycota, Zygomycota, Basidiomycota, highest at 20 °C (r = 1.44) during the first 48 h but decreased and Zoopagales [1]. -
A New Genus of Saprolegniaceous Oomycete Rotifer Parasites Related to Aphanomyces, with Unique Sporangial Outgrowths
College of Saint Benedict and Saint John's University DigitalCommons@CSB/SJU Biology Faculty Publications Biology 7-2014 Aquastella gen. nov.: A new genus of saprolegniaceous oomycete rotifer parasites related to Aphanomyces, with unique sporangial outgrowths Daniel P. Molloy Sally L. Glockling Clifford A. Siegfried Gordon W. Beakes Timothy Y. James See next page for additional authors Follow this and additional works at: https://digitalcommons.csbsju.edu/biology_pubs Part of the Biology Commons, Fungi Commons, and the Parasitology Commons Recommended Citation Molloy DP, Glockling SL, Siegfried CA, Beakes GW, James TY, Mastitsky SE, Wurdak ES, Giamberini L, Gaylo MJ, Nemeth MJ. 2014. Aquastella gen. nov.: A new genus of saprolegniaceous oomycete rotifer parasites related to Aphanomyces, with unique sporangial outgrowths. Fungal Biology 118(7): 544-558. NOTICE: this is the author’s version of a work that was accepted for publication in Fungal Biology. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in Fungal Biology 118(7) (2014). DOI: 10.1016/j.funbio.2014.01.007. Figures associated with this document are available for download as separate files at http://digitalcommons.csbsju.edu/biology_pubs/63/. Authors Daniel P. Molloy, Sally L. Glockling, Clifford A. Siegfried, Gordon W. Beakes, Timothy Y. James, Sergey E. Mastitsky, Elizabeth S. Wurdak, Laure Giamberini, Michael J. Gaylo, and Michael J. Nemeth This article is available at DigitalCommons@CSB/SJU: https://digitalcommons.csbsju.edu/biology_pubs/63 1 Aquastella gen. -
Extraordinary Multi-Organismal Interactions Involving Bacteriophages, Bacteria, Fungi, and Rotifers: Quadruple Microbial Trophic Network in Water Droplets
International Journal of Molecular Sciences Article Extraordinary Multi-Organismal Interactions Involving Bacteriophages, Bacteria, Fungi, and Rotifers: Quadruple Microbial Trophic Network in Water Droplets Katarzyna Turnau 1,* , Edyta Fiałkowska 1, Rafał Wazny˙ 2 , Piotr Rozp ˛adek 2, Grzegorz Tylko 3, Sylwia Bloch 4, Bozena˙ Nejman-Fale ´nczyk 5 , Michał Grabski 5, Alicja W˛egrzyn 4 and Grzegorz W˛egrzyn 5 1 Institute of Environmental Sciences, Jagiellonian University in Krakow, Gronostajowa 7, 30-387 Krakow, Poland; edyta.fi[email protected] 2 Malopolska Centre of Biotechnology, Jagiellonian University in Krakow, Gronostajowa 7a, 30-387 Krakow, Poland; [email protected] (R.W.); [email protected] (P.R.) 3 Institute of Zoology and Biomedical Research, Jagiellonian University in Krakow, Gronostajowa 7, 30-387 Krakow, Poland; [email protected] 4 Laboratory of Phage Therapy, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Kladki 24, 80-822 Gdansk, Poland; [email protected] (S.B.); [email protected] (A.W.) 5 Department of Molecular Biology, Faculty of Biology, University of Gdansk, Wita Stwosza 59, 80-308 Gdansk, Poland; [email protected] (B.N.-F.); [email protected] (M.G.); [email protected] (G.W.) * Correspondence: [email protected]; Tel.: +48-506-006-642 Citation: Turnau, K.; Fiałkowska, E.; Wazny,˙ R.; Rozp ˛adek,P.; Tylko, G.; Abstract: Our observations of predatory fungi trapping rotifers in activated sludge and laboratory Bloch, S.; Nejman-Fale´nczyk,B.; culture allowed us to discover a complicated trophic network that includes predatory fungi armed Grabski, M.; W˛egrzyn,A.; W˛egrzyn, with bacteria and bacteriophages and the rotifers they prey on. -
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Phylogeny of the Zygomycota Based on Nuclear Ribosomal Sequence Data
Mycologia, 98(6), 2006, pp. 872–884. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Phylogeny of the Zygomycota based on nuclear ribosomal sequence data Merlin M. White1,2 lineages are distinct from the Mucorales, Endogo- Department of Ecology & Evolutionary Biology, nales and Mortierellales, which appear more closely University of Kansas, Lawrence, Kansas 66045-7534 related to the Ascomycota + Basidiomycota + Timothy Y. James Glomeromycota. The final major group, the insect- Department of Biology, Duke University, Durham, associated Entomophthorales, appears to be poly- North Carolina 27708 phyletic. In the present analyses Basidiobolus and Neozygites group within Zygomycota but not with the Kerry O’Donnell Entomophthorales. Clades are discussed with special NCAUR, ARS, USDA, Peoria, Illinois 61604 reference to traditional classifications, mapping mor- Matı´as J. Cafaro phological characters and ecology, where possible, as Department of Biology, University of Puerto Rico at a snapshot of our current phylogenetic perspective of Mayagu¨ ez, Mayagu¨ ez, Puerto Rico 00681 the Zygomycota. Key words: Asellariales, basal lineages, Chytridio- Yuuhiko Tanabe mycota, Fungi, molecular systematics, opisthokont Laboratory of Intellectual Fundamentals for Environmental Studies, National Institute for Environmental Studies, Ibaraki 305-8506, Japan INTRODUCTION Junta Sugiyama Most studies suggest that the phylum Zygomycota is Tokyo Office, TechnoSuruga Co. Ltd., 1-8-3, Kanda not monophyletic and the classification of the entire Ogawamachi, Chiyoda-ku, Tokyo 101-0052, Japan phylum is in flux. The Zygomycota currently is divided into two classes, the Zygomycetes and Trichomycetes. However molecular phylogenies sug- Abstract: The Zygomycota is an ecologically heter- gest that neither group is natural (i.e. monophyletic). -
Phylogeny of the Zygomycota Based on Nuclear Ribosomal Sequence Data
Mycologia, 98(6), 2006, pp. 872–884. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Phylogeny of the Zygomycota based on nuclear ribosomal sequence data Merlin M. White1,2 lineages are distinct from the Mucorales, Endogo- Department of Ecology & Evolutionary Biology, nales and Mortierellales, which appear more closely University of Kansas, Lawrence, Kansas 66045-7534 related to the Ascomycota + Basidiomycota + Timothy Y. James Glomeromycota. The final major group, the insect- Department of Biology, Duke University, Durham, associated Entomophthorales, appears to be poly- North Carolina 27708 phyletic. In the present analyses Basidiobolus and Neozygites group within Zygomycota but not with the Kerry O’Donnell Entomophthorales. Clades are discussed with special NCAUR, ARS, USDA, Peoria, Illinois 61604 reference to traditional classifications, mapping mor- Matı´as J. Cafaro phological characters and ecology, where possible, as Department of Biology, University of Puerto Rico at a snapshot of our current phylogenetic perspective of Mayagu¨ ez, Mayagu¨ ez, Puerto Rico 00681 the Zygomycota. Key words: Asellariales, basal lineages, Chytridio- Yuuhiko Tanabe mycota, Fungi, molecular systematics, opisthokont Laboratory of Intellectual Fundamentals for Environmental Studies, National Institute for Environmental Studies, Ibaraki 305-8506, Japan INTRODUCTION Junta Sugiyama Most studies suggest that the phylum Zygomycota is Tokyo Office, TechnoSuruga Co. Ltd., 1-8-3, Kanda not monophyletic and the classification of the entire Ogawamachi, Chiyoda-ku, Tokyo 101-0052, Japan phylum is in flux. The Zygomycota currently is divided into two classes, the Zygomycetes and Trichomycetes. However molecular phylogenies sug- Abstract: The Zygomycota is an ecologically heter- gest that neither group is natural (i.e. monophyletic). -
Aquatic Fungi
10 Aquatic Fungi Wurzbacher Christian1, Kerr Janice2 and Grossart Hans-Peter1 1Leibniz-Institute of Freshwater Ecology and Inland Fisheries 2La Trobe University 1Germany 2Australia 1. Introduction Seventy-one percent of our planet’s surface consist of water, but only 0.6% are lentic and lotic freshwater habitats. Often taken for granted, freshwaters are immensely diverse habitats and host >10% of all animal and >35% of all vertebrate species worldwide. However, no other major components of global biodiversity are declining as fast and massively as freshwater species and ecosystems. Urbanisation, economic growth, and climate change have increased pressure on freshwater resources, whilst biodiversity has given way to the increasing demands of a growing human population. The adverse impacts on aquatic ecosystems include habitat fragmentation, eutrophication, habitat loss, and invasion of pathogenic as well as toxic species. Although there is increasing evidence that freshwater fungal diversity is high, the study of the biodiversity of freshwater fungi is still in its infancy. In light of the rapid decline in freshwater biodiversity, it is timely and necessary to increase our efforts to evaluate the diversity and potential ecological function of this fascinating and diverse group of freshwater organisms. Hyde et al (2007) have estimated that there are approximately 1.5 million fungal species on earth. Of these, only around 3000 species are known to be associated with aquatic habitats and only 465 species occur in marine waters (Shearer et al., 2007). This small proportion of aquatic fungal taxa is surprising because the aquatic environment is a potentially good habitat for many species. Based on this notion we assume that the “real” number of aquatic fungi is much larger than 3000 and includes a large variety of hitherto undescribed species with unknown ecological function. -
Title Electron Microscope Studies on the Development and Germination
Electron microscope studies on the development and Title germination of zygospores in Zoophagus pectosporus, a zoopagaceous fungus capturing nematodes( fulltext ) Author(s) SAIKAWA,Masatoshi; WAKAI,Yuka; KATSUSHIMA,Naoko Citation 東京学芸大学紀要. 自然科学系, 63: 91-100 Issue Date 2011-09-30 URL http://hdl.handle.net/2309/112016 Publisher 東京学芸大学学術情報委員会 Rights Bulletin of Tokyo Gakugei University, Division of Natural Sciences, 63: 91 - 100,2011 Electron microscope studies on the development and germination of zygospores in Zoophagus pectosporus, a zoopagaceous fungus capturing nematodes Masatoshi SAIKAWA*, Yuka WAKAI** and Naoko KATSUSHIMA** Department of Environmental Sciences (Received for Publication; May 20, 2011) SAIKAWA, M., WAKAI, Y. and KATSUSHIMA, N.: Electron microscope studies on the development and germination of zygospores in Zoophagus pectosporus, a zoopagaceous fungus capturing nematodes. Bull. Tokyo Gakugei Univ. Div. Nat. Sci., 63: 91-100 (2011) ISSN 1880-4330 Abstract Zygospore development of Zoophagus pectosporus examined in ultrathin sections is reported for the first time for the family Zoopagaceae. The fusion wall made by the union between paired gametangia is known not to dissolve, but to disappear by means of widening a central pore that is made after fusion. The fusion wall becomes to be incorporated into the cell wall of a developing, immature zygosporangium. On the other hand, two gametangial septa, newly-made cross walls delimiting between the immature zygosporangium and newly-made paired suspensors, are known to have a central pore. In this study, germination of zygospore, composed of zygosporangium and zygospore-proper, is seen in electron micrographs in thin sections for the first time for the family. The protoplasm of the zygospore in germination is known to be occupied totally by numerous electron-dense large vesicles, 0.5-1.0 µm in diameter, and is continuous through that of a germ tube and a few non-septate vegetative hyphae developed from the germ tube. -
Methodological Biases That Limit Detection of Early
Understudied, underrepresented, and unknown: methodological biases that limit detection of early diverging fungi from environmental samples Nicole Reynolds1, Michelle Jusino2, Jason Stajich3, and Matthew Smith1 1University of Florida 2Williams and Mary College 3University of California Riverside April 14, 2021 Abstract Metabarcoding is an important tool for understanding fungal communities. The internal transcribed spacer (ITS) rDNA is the accepted fungal barcode but has known problems. The large subunit (LSU) rDNA has also been used to investigate fungal communities but available LSU metabarcoding primers were mostly designed to target Dikarya (Ascomycota + Basidiomycota) with little attention to early diverging fungi (EDF). However, evidence from multiple studies suggests that EDF comprise a large portion of unknown diversity in community sampling. Here we investigate how DNA marker choice and methodological biases impact recovery of EDF from environmental samples. We focused on one EDF lineage, Zoopagomycota, as an example. We evaluated three primer sets (ITS1F/ITS2, LROR/LR3, and LR3 paired with new primer LR22F) to amplify and sequence a Zoopagomycota mock community and a set of 146 environmental samples with Illumina MiSeq. We compared two taxonomy assignment methods and created an LSU reference database compatible with AMPtk software. The two taxonomy assignment methods recovered strikingly different communities of fungi and EDF. Target fragment length variation exacerbated PCR amplification biases and influenced downstream taxonomic assignments, but this effect was greater for EDF than Dikarya. To improve identification of LSU amplicons we performed phylogenetic reconstruction and illustrate the advantages of this critical tool for investigating identified and unidentified sequences. Our results suggest much of the EDF community may be missed or misidentified with “standard” metabarcoding approaches and modified techniques are needed to understand the role of these taxa in a broader ecological context. -
Fungi–Nematode Interactions: Diversity, Ecology, and Biocontrol Prospects in Agriculture
Journal of Fungi Review Fungi–Nematode Interactions: Diversity, Ecology, and Biocontrol Prospects in Agriculture Ying Zhang 1, Shuoshuo Li 1,2, Haixia Li 1,2, Ruirui Wang 1,2, Ke-Qin Zhang 1,* and Jianping Xu 1,3,* 1 State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, and Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; [email protected] (Y.Z.); [email protected] (S.L.); [email protected] (H.L.); [email protected] (R.W.) 2 School of Life Science, Yunnan University, Kunming 650032, China 3 Department of Biology, McMaster University, Hamilton, ON L8S 4K1, Canada * Correspondence: [email protected] (K.-Q.Z.); [email protected] (J.X.) Received: 15 September 2020; Accepted: 2 October 2020; Published: 4 October 2020 Abstract: Fungi and nematodes are among the most abundant organisms in soil habitats. They provide essential ecosystem services and play crucial roles for maintaining the stability of food-webs and for facilitating nutrient cycling. As two of the very abundant groups of organisms, fungi and nematodes interact with each other in multiple ways. Here in this review, we provide a broad framework of interactions between fungi and nematodes with an emphasis on those that impact crops and agriculture ecosystems. We describe the diversity and evolution of fungi that closely interact with nematodes, including food fungi for nematodes as well as fungi that feed on nematodes. Among the nematophagous fungi, those that produce specialized nematode-trapping devices are especially interesting, and a great deal is known about their diversity, evolution, and molecular mechanisms of interactions with nematodes. -
UC Office of the President Recent Work
UC Office of the President Recent Work Title Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi). Permalink https://escholarship.org/uc/item/4mp2h2n6 Authors Davis, William J Amses, Kevin R Benny, Gerald L et al. Publication Date 2019-04-01 DOI 10.1016/j.ympev.2019.01.006 License https://creativecommons.org/licenses/by-nc-sa/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Short title: Phylogenetics of Zoopagales Title: Genome-scale phylogenetics analyses reveals a monophyletic Zoopagales (Zoopagomycota, Fungi) Authors: William J. Davis Kevin R. Amses Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan Gerald L. Benny Department of Plant Pathology, University of Florida, Gainesville, Florida Derreck Carter-House Department of Microbiology and Plant Pathology, University of California-Riverside Ying Chang Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon Igor Grigoriev United States of America Department of Energy Joint Genome Institute, Walnut Creek, California Matthew E. Smith Department of Plant Pathology, University of Florida, Gainesville, Florida 1 Joseph W. Spatafora Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon Jason E. Stajich Department of Microbiology and Plant Pathology, University of California-Riverside Timothy Y. James Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan Abstract: Previous genome-scale phylogenetic analyses of Fungi have under sampled taxa from Zoopagales; this order contains many predacious or parasitic genera, and most have never been grown in pure culture. We sequenced the genomes of 4 zoopagalean taxa that are predators of amoebae, nematodes, or rotifers and the genome of one taxon that is a parasite of amoebae using single cell sequencing methods with whole genome amplification. -
Basal Clades of Fungi (Including Aphelidiomycota
Fungal Diversity (2018) 92:43–129 https://doi.org/10.1007/s13225-018-0409-5 (0123456789().,-volV)(0123456789().,-volV) Notes for genera: basal clades of Fungi (including Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota) 1,2 3 4 5 6 Nalin N. Wijayawardene • Julia Pawłowska • Peter M. Letcher • Paul M. Kirk • Richard A. Humber • 7 3 8 3 3 Arthur Schu¨ ßler • Marta Wrzosek • Anna Muszewska • Alicja Okrasin´ ska • Łukasz Istel • 3 9 10 11 Aleksandra Ge˛siorska • Paul Mungai • Adebola Azeez Lateef • Kunhiraman C. Rajeshkumar • 11 12 13 13 14,15 Rajshree V. Singh • Renate Radek • Grit Walther • Lysett Wagner • Christopher Walker • 16 17 18 19 D. Siril A. Wijesundara • Moslem Papizadeh • Somayeh Dolatabadi • Belle D. Shenoy • 20 21 1,2 Yuri S. Tokarev • Saisamorn Lumyong • Kevin D. Hyde Received: 28 July 2018 / Accepted: 24 August 2018 / Published online: 19 September 2018 Ó School of Science 2018 Abstract Compared to the higher fungi (Dikarya), taxonomic and evolutionary studies on the basal clades of fungi are fewer in number. Thus, the generic boundaries and higher ranks in the basal clades of fungi are poorly known. Recent DNA based taxonomic studies have provided reliable and accurate information. It is therefore necessary to compile all available information since basal clades genera lack updated checklists or outlines. Recently, Tedersoo et al. (MycoKeys 13:1–20, 2016) accepted Aphelidiomycota and Rozellomycota in Fungal clade. Thus, we regard both these phyla as members in Kingdom Fungi. We accept 16 phyla in basal clades viz. Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomy- cota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota.