Cell-Line Dependent Antiviral Activity of Sofosbuvir Against Zika Virus
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Antibiotic Fidaxomicin Is an Rdrp Inhibitor As a Potential New Therapeutic Agent Against Zika Virus
Yuan et al. BMC Medicine (2020) 18:204 https://doi.org/10.1186/s12916-020-01663-1 RESEARCH ARTICLE Open Access Antibiotic fidaxomicin is an RdRp inhibitor as a potential new therapeutic agent against Zika virus Jie Yuan1,2,3†, Jianchen Yu2,3,4†, Yun Huang3, Zhenjian He2,5, Jia Luo6, Yun Wu2,4,7, Yingchun Zheng8, Jueheng Wu2,4,7, Xun Zhu2,4, Haihe Wang1 and Mengfeng Li2,3,4* Abstract Background: Zika virus (ZIKV) infection is a global health problem, and its complications, including congenital Zika syndrome and Guillain-Barré syndrome, constitute a continued threat to humans. Unfortunately, effective therapeutics against ZIKV infection are not available thus far. Methods: We screened the compounds collection consisting of 1789 FDA-approved drugs by a computational docking method to obtain anti-ZIKV candidate compounds targeting ZIKV RNA-dependent RNA polymerase (RdRp). SPR (BIAcore) assay was employed to demonstrate the candidate compounds’ direct binding to ZIKV RdRp, and polymerase activity assay was used to determine the inhibitory effect on ZIKV RdRp-catalyzed RNA synthesis. The antiviral effects on ZIKV in vitro and in vivo were detected in infected cultured cells and in Ifnar1−/− mice infected by ZIKV virus using plaque assay, western blotting, tissue immunofluorescence, and immunohistochemistry. Results: Here, we report that a first-in-class macrocyclic antibiotic, which has been clinically used to treat Clostridium difficile infection, fidaxomicin, potently inhibits ZIKV replication in vitro and in vivo. Our data showed that fidaxomicin was effective against African and Asian lineage ZIKV in a wide variety of cell lines of various tissue origins, and prominently suppressed ZIKV infection and significantly improved survival of infected mice. -
A Rational Approach to Identifying Effective Combined Anticoronaviral Therapies Against Feline 2 Coronavirus 3 4 5 S.E
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.09.195016; this version posted July 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 A rational approach to identifying effective combined anticoronaviral therapies against feline 2 coronavirus 3 4 5 S.E. Cook1*, H. Vogel2, D. Castillo3, M. Olsen4, N. Pedersen5, B. G. Murphy3 6 7 1 Graduate Group Integrative Pathobiology, School of Veterinary Medicine, University of 8 California, Davis, CA, USA 9 10 2School of Veterinary Medicine, University of California, Davis, Ca, USA 11 12 3Department of Pathology, Microbiology, and Immunology, School of Veterinary Medicine, 13 University of California, Davis, CA, USA 14 15 4Department of Pharmaceutical Sciences, College of Pharmacy-Glendale, Midwestern 16 University, Glendale, AZ, USA 17 18 5Department of Medicine and Epidemiology, School of Veterinary Medicine, University of 19 California, Davis, CA, USA 20 21 22 *Corresponding author 23 24 E-mail: [email protected] (SEC) 25 26 27 Abstract 28 Feline infectious peritonitis (FIP), caused by a genetic mutant of feline enteric coronavirus 29 known as FIPV, is a highly fatal disease of cats with no currently available vaccine or FDA- 30 approved cure. Dissemination of FIPV in affected cats results in a range of clinical signs 31 including cavitary effusions, anorexia, fever and lesions of pyogranulomatous vasculitis and 32 peri-vasculitis with or without central nervous system and/or ocular involvement. -
Assessment Report
21 November 2013 EMA/CHMP/688774/2013 Committee for Medicinal Products for Human Use (CHMP) Assessment report Sovaldi International non-proprietary name: sofosbuvir Procedure No. EMEA/H/C/002798/0000 Note Assessment report as adopted by the CHMP with all information of a commercially confidential nature deleted. 7 Westferry Circus ● Canary Wharf ● London E14 4HB ● United Kingdom Telephone +44 (0)20 7418 8400 Facsimile +44 (0)20 7523 7455 E-mail [email protected] Website www.ema.europa.eu An agency of the European Union © European Medicines Agency, 2014. Reproduction is authorised provided the source is acknowledged. Table of contents 1. Background information on the procedure ............................................ 7 1.1. Submission of the dossier .................................................................................... 7 1.2. Manufacturers .................................................................................................... 8 1.3. Steps taken for the assessment of the product ....................................................... 8 2. Scientific discussion .............................................................................. 9 2.1. Introduction ....................................................................................................... 9 2.2. Quality aspects ................................................................................................ 14 2.2.1. Introduction .................................................................................................. 14 2.2.2. -
DNA/RNA Synthesis
DNA/RNA Synthesis RNA synthesis, which is also called DNA transcription, is a highly selective process. Transcription by RNA polymerase II extends beyond RNA synthesis, towards a more active role in mRNA maturation, surveillance and export to the cytoplasm. Single-strand breaks are repaired by DNA ligase using the complementary strand of the double helix as a template, with DNA ligase creating the final phosphodiester bond to fully repair the DNA.DNA ligases discriminate against substrates containing RNA strands or mismatched base pairs at positions near the ends of the nickedDNA. Bleomycin (BLM) exerts its genotoxicity by generating free radicals, whichattack C-4′ in the deoxyribose backbone of DNA, leading to opening of the ribose ring and strand breakage; it is an S-independentradiomimetic agent that causes double-strand breaks in DNA. First strand cDNA is synthesized using random hexamer primers and M-MuLV Reverse Transcriptase (RNase H). Second strand cDNA synthesis is subsequently performed using DNA Polymerase I and RNase H. The remaining overhangs are converted into blunt ends using exonuclease/polymerase activity. After adenylation of the 3′ ends of DNA fragments, NEBNext Adaptor with hairpin loop structure is ligated to prepare the samples for hybridization. Cell cycle and DNA replication are the top two pathways regulated by BET bromodomain inhibition. Cycloheximide blocks the translation of mRNA to protein. www.MedChemExpress.com 1 DNA/RNA Synthesis Inhibitors, Agonists, Activators, Modulators & Chemicals (+)-TK216 (-)-TK216 Cat. No.: HY-122903B Cat. No.: HY-122903A (+)-TK216 is an enantiomer of TK216 (HY-122903). (-)-TK216 is an enantiomer of TK216 (HY-122903). TK216 is an orally active and potent E26 TK216 is an orally active and potent E26 transformation specific (ETS) inhibitor. -
HCV - - Leverages Gilead’S Infrastructure and Expertise in Antiviral Drug Development, Manufacturing and Commercialization
UNITED STATES SECURITIES AND EXCHANGE COMMISSION WASHINGTON, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of Earliest Event Reported): November 21, 2011 Gilead Sciences, Inc. (Exact name of registrant as specified in its charter) Delaware 0-19731 94-3047598 (State or other jurisdiction (Commission (I.R.S. Employer of incorporation) File Number) Identification No.) 333 Lakeside Drive, Foster City, California 94404 (Address of principal executive offices) (Zip Code) Registrant’s telephone number, including area code (650) 574-3000 Not Applicable Former name or former address, if changed since last report Check the appropriate box below if the Form 8-K filing is intended to simultaneously satisfy the filing obligation of the registrant under any of the following provisions: ¨ Written communications pursuant to Rule 425 under the Securities Act (17 CFR 230.425) ¨ Soliciting material pursuant to Rule 14a-12 under the Exchange Act (17 CFR 240.14a-12) x Pre-commencement communications pursuant to Rule 14d-2(b) under the Exchange Act (17 CFR 240.14d-2(b)) ¨ Pre-commencement communications pursuant to Rule 13e-4(c) under the Exchange Act (17 CFR 240.13e-4(c)) Item 8.01 Other Events. On November 21, 2011, Gilead Sciences, Inc. (“Gilead”) announced that it had signed a definitive agreement under which Gilead will acquire Pharmasset, Inc. (“Pharmasset”) for $137 cash per Pharmasset share. The transaction, which values Pharmasset at approximately $11 billion, was unanimously approved by Pharmasset’s Board of Directors. A copy of the Press Release is attached as Exhibit 99.1 to this Current Report on Form 8-K and is incorporated herein by reference. -
Resistance Analysis and Characterization of NITD008 As an Adenosine Analog Inhibitor Against Hepatitis C Virus
Antiviral Research 126 (2016) 43e54 Contents lists available at ScienceDirect Antiviral Research journal homepage: www.elsevier.com/locate/antiviral Resistance analysis and characterization of NITD008 as an adenosine analog inhibitor against hepatitis C virus * Jie Qing a, , Rui Luo a, Yaxin Wang b, Junxiu Nong a, Ming Wu a, Yan Shao a, Ruoyi Tang a, ** *** Xi Yu a, Zheng Yin b, , Yuna Sun c, a Tsinghua-Peking Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China b Center of Basic Molecular Science, Department of Chemistry, Tsinghua University, Beijing 100084, China c National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing 100101, China article info abstract Article history: Hepatitis disease caused by hepatitis C virus (HCV) is a severe threat to global public health, affecting Received 19 June 2015 approximately 3% of the world's population. Sofosbuvir (PSI-7977), a uridine nucleotide analog inhibitor Received in revised form targeting the HCV NS5B polymerase, was approved by FDA at the end of 2013 and represents a key step 19 December 2015 towards a new era in the management of HCV infection. Previous study identified NITD008, an adenosine Accepted 22 December 2015 nucleoside analog, as the specific inhibitor against dengue virus and showed good antiviral effect on Available online 24 December 2015 other flaviviruses or enteroviruses. In this report, we systematically analyzed the anti-HCV profile of NITD008, which was discovered to effectively suppress the replication of different strains of HCV in Keywords: HCV human hepatoma cells with a low nanomolar activity. On genotype 2a virus, or 2a, 1a, and 1b replicon > NITD008 cells, EC50 values were 8.7 nM, 93.3 nM, 60.0 nM and 67.2 nM, and selective index values were 2298.9, Nucleoside analog >214.4, >333.3, >298.5 respectively. -
Overview of Flavivirus Therapeutics
Overview of Flavivirus Therapeutics Pei-Yong Shi March 29, 2016 Outline • Antiviral strategy • Compounds tested in dengue clinical trials • Repurposing strategy for Zika therapeutics • Current status of dengue direct antiviral agents • Knowledge gaps for Zika virus therapeutics Antiviral strategy • Targeting viral proteins • Polymerase/reverse transcriptase inhibitors • HIV and HCV protease inhibitors • HIV integrase inhibitors • HCV NS5A inhibitors • Attachment and entry inhibitors: small molecule, peptide, antibody • Targeting host proteins required for viral life cycle • HIV CCR5 co-receptor inhibitor (Mavaviroc) • Stimulating immune system • Interferon • Immune modulators: RIG-I, MDA5, Sting, and TLR modulators • Targeting molecular pathways that lead to diseases • Molecular pathways that lead to pathogenic diseases should be clearly defined for therapeutic intervention. Flavivirus antiviral approach Target-based approach Cell-based phenotypic approach Viral target with or without enzymatic activity Assay development: 1. Virus infection-based 2. Replicon-based 3. Luciferase-reporting virus 1. Enzyme activity-based HTS 4. High-content image infection assay 2. Fragment-based screening 3. Structure-based rational design 4. Virtual screening HTS Hits and leads Hits and leads Target deconvolution: Clinical candidate section Host and viral targets Compounds tested in dengue clinical trials: Repurposing strategy . Inhibit viral targets • Balapiravir (J Infect Dis 2013 207(9):1442): excess cytokine production triggered by dengue virus infection prevented the conversion of the balapiravir prodrug to its active form (JVI 83:1740) . Inhibit host targets that are essential for viral infection cycle • Chloroquine: inhibitor of fusion and virion maturation, and modulator of host response to viral infection (PLoS Negl Trop Dis 2012 doi:10.1371) • Celgosivir and iminosugar: α-glucosidase inhibitor (Lancet Infect Dis 2014 14:706) • Lovastatin: cholesterol synthesis inhibitor and inflammation modulator (Clin Infect Dis 2016 62:468) . -
Review Resistance to Mericitabine, a Nucleoside Analogue Inhibitor of HCV RNA-Dependent RNA Polymerase
Antiviral Therapy 2012; 17:411–423 (doi: 10.3851/IMP2088) Review Resistance to mericitabine, a nucleoside analogue inhibitor of HCV RNA-dependent RNA polymerase Jean-Michel Pawlotsky1,2*, Isabel Najera3, Ira Jacobson4 1National Reference Center for Viral Hepatitis B, C and D, Department of Virology, Hôpital Henri Mondor, Université Paris-Est, Créteil, France 2INSERM U955, Créteil, France 3Roche, Nutley, NJ, USA 4Weill Cornell Medical College, New York-Presbyterian Hospital, New York, NY, USA *Corresponding author e-mail: [email protected] Mericitabine (RG7128), an orally administered prodrug passage experiments. To date, no evidence of genotypic of PSI-6130, is the most clinically advanced nucleoside resistance to mericitabine has been detected by popula- analogue inhibitor of the RNA-dependent RNA poly- tion or clonal sequence analysis in any baseline or on- merase (RdRp) of HCV. This review describes what has treatment samples collected from >600 patients enrolled been learnt so far about the resistance profile of mericit- in Phase I/II trials of mericitabine administered as mon- abine. A serine to threonine substitution at position 282 otherapy, in combination with pegylated interferon/ (S282T) of the RdRp that reduces its replication capacity ribavirin, or in combination with the protease inhibitor, to approximately 15% of wild-type is the only variant danoprevir, for 14 days in the proof-of-concept study of that has been consistently generated in serial in vitro interferon-free therapy. Introduction The approval of boceprevir and telaprevir [1,2], the first HCV variants are selected and grow when the inter- inhibitors of the non-structural (NS) 3/4A (NS3/4A) feron response is inadequate [3,4,6]. -
Zika Virus Induces Neuronal and Vascular Degeneration In
Li et al. acta neuropathol commun (2021) 9:97 https://doi.org/10.1186/s40478-021-01195-6 RESEARCH Open Access Zika virus induces neuronal and vascular degeneration in developing mouse retina Yi Li1, Shuizhen Shi1, Fan Xia1, Chao Shan2, Yonju Ha1, Jing Zou2, Awadalkareem Adam3, Ming Zhang4, Tian Wang3, Hua Liu1,5*, Pei‑Yong Shi2,6* and Wenbo Zhang1,6,7* Abstract Zika virus (ZIKV), a mosquito‑borne favivirus, can cause severe eye disease and even blindness in newborns. However, ZIKV‑induced retinal lesions have not been studied in a comprehensive way, mechanisms of ZIKV‑induced retinal abnormalities are unknown, and no therapeutic intervention is available to treat or minimize the degree of vision loss in patients. Here, we developed a novel mouse model of ZIKV infection to evaluate its impact on retinal structure. ZIKV (20 plaque‑forming units) was inoculated into neonatal wild type C57BL/6J mice at postnatal day (P) 0 subcu‑ taneously. Retinas of infected mice and age‑matched controls were collected at various ages, and retinal structural alterations were analyzed. We found that ZIKV induced progressive neuronal and vascular damage and retinal infam‑ mation starting from P8. ZIKV‑infected retina exhibited dramatically decreased thickness with loss of neurons, initial neovascular tufts followed by vessel dilation and degeneration, increased microglia and leukocyte recruitment and activation, degeneration of astrocyte network and gliosis. The above changes may involve infammation and endo‑ plasmic reticulum stress‑mediated cell apoptosis and necroptosis. Moreover, we evaluated the efcacy of preclinical drugs and the safety of ZIKV vaccine candidate in this mouse model. -
Antiviral Research and Development Against Dengue Virus
Antiviral Research and Development Against Dengue Virus Bruno Canard, PhD. [email protected] 1 Table of Contents Part 1. Antivirals 3 A short historical view on antiviral research and therapies 3 Lessons learned from recent viral diseases and pandemies 3 The methods used to discover antivirals 4 Infected cell assays 5 Knowledge-based methods 5 The source of anti-infectious molecules 6 Why has natural product screening been neglected in antiviral research ? 8 Challenges associated with natural products in antiviral research 8 What is a validated antiviral target ? 9 Animal models 9 Patient cohorts and clinical trials 10 Frequent arguments about antiviral therapy feasibility 10 The introduction of dengue as a druggable disease 11 Diagnostics, and what does it tells us for antiviral therapy ? 11 Current treatment 11 Part 2. Dengue 13 Preamble 13 The Dengue Virus 13 The DENV targets for antiviral research 13 Overview of genome organisation 14 Overview of the DV particle and DV proteins as targets for drugs 14 The structural proteins 14 The Non-Structural proteins 15 RNA structures 17 The dengue validated targets 17 The cellular targets for antiviral research against dengue 18 siRNAs as tools and/or therapeutic agents 19 Response modifiers 20 Monoclonal antibodies 21 Mechanical devices 21 Part 3. Academic and academy-associated research centers 22 Part 4. The current industrial network of AV discovery 31 Part 5. Mapping the dengue drug design effort and needs 38 Annex 1. References 42 Annex 2. Patents 43 2 Part 1. Antivirals A short historical view on antiviral research and therapies The first significant successes of anti-infectious disease treatments originated from the discovery and use of antibiotics. -
Current and Future Therapies for Hepatitis C Virus Infection: from Viral Proteins to Host Targets
Arch Virol DOI 10.1007/s00705-013-1803-7 BRIEF REVIEW Current and future therapies for hepatitis C virus infection: from viral proteins to host targets Muhammad Imran • Sobia Manzoor • Nasir Mahmood Khattak • Madiha Khalid • Qazi Laeeque Ahmed • Fahed Parvaiz • Muqddas Tariq • Javed Ashraf • Waseem Ashraf • Sikandar Azam • Muhammad Ashraf Received: 27 February 2013 / Accepted: 19 June 2013 Ó Springer-Verlag Wien 2013 Abstract Hepatitis C virus (HCV) infection is the most cell-targeting compounds, the most hopeful results have important problem across the world. It causes acute and been demonstrated by cyclophilin inhibitors. The current chronic liver infection. Different approaches are in use to SOC treatment of HCV infection is Peg-interferon, riba- inhibit HCV infection, including small organic compounds, virin and protease inhibitors (boceprevir or telaprevir). The siRNA, shRNA and peptide inhibitors. This review article future treatment of this life-threatening disease must summarizes the current and future therapies for HCV involve combinations of therapies hitting multiple targets infection. PubMed and Google Scholar were searched for of HCV and host factors. It is strongly expected that the articles published in English to give an insight into the near future, treatment of HCV infection will be a combi- current inhibitors against this life-threatening virus. HCV nation of direct-acting agents (DAA) without the involve- NS3/4A protease inhibitors and nucleoside/nucleotide ment of interferon to eliminate its side effects. inhibitors of NS5B polymerase are presently in the most progressive stage of clinical development, but they are linked with the development of resistance and viral Introduction breakthrough. Boceprevir and telaprevir are the two most important protease inhibitors that have been approved HCV is a major health burden affecting about 200 million recently for the treatment of HCV infection. -
Curing Hepatitis C" by Gregory T
6 ThE FUTURE of HCV TREATMENT Beyond Triple Therapy I am still on treatment and almost halfway through the trial. I do not have hepatitis C at the present time. I hope this treatment has cured it, and I hope I will not need future treatment. The results were immediate. Before I began the QUAD Therapy clinical trial, there were over four million copies of the virus per milliliter of my blood. After the first week, that was down to only 160 copies per milliliter, and, at week two, I tested negative for hepatitis C. The virus is still undetectable in my blood—hopefully, this is it, and I am cured. — Mark Tw e n ty year s ago, I treated patients with HCV genotype 1 infection with interferon monotherapy, and five percent achieved SVR. Results improved to an SVR of 45 percent with peginterferon/ribavirin. Now, the new standard of care of triple therapy is expected to raise SVR up to 75 percent. What’s next? In this chapter, I look to the future, focusing on the next generation of direct-acting antivirals: new protease inhibitors, polymerase inhibitors, From "Curing Hepatitis C" by Gregory T. Everson Reprinted with permission— 115 by Hatherleigh— Press ISBN: 978-1-57826-425-4 Available wherever books are sold 116 CUR in G H E PA titis C NS5A inhibitors, and others. The future for treating HCV is, indeed, bright. Hopefully, the time will soon arrive when nearly every person infected with HCV will have safe, tolerable, and effective options for treatment. The year 2011 marked the beginning of a new era in the treatment of the hepatitis C virus (HCV) with the introduction of telaprevir and boceprevir.