Tailless Keratins Assemble Into Regular Intermediate Filaments in Vitro
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The functional role(s) of dual intermediate filament expression in tumor cell migration and invasion. Item Type text; Dissertation-Reproduction (electronic) Authors Chu, Yi-Wen. Publisher The University of Arizona. Rights Copyright © is held by the author. Digital access to this material is made possible by the University Libraries, University of Arizona. Further transmission, reproduction or presentation (such as public display or performance) of protected items is prohibited except with permission of the author. Download date 02/10/2021 04:10:29 Link to Item http://hdl.handle.net/10150/186143 INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleed through, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand corner and continuing from left to right in equal sections with small overlaps. Each original is also photographed in one exposure and is included in reduced form at the back of the book. -
Proteomic Expression Profile in Human Temporomandibular Joint
diagnostics Article Proteomic Expression Profile in Human Temporomandibular Joint Dysfunction Andrea Duarte Doetzer 1,*, Roberto Hirochi Herai 1 , Marília Afonso Rabelo Buzalaf 2 and Paula Cristina Trevilatto 1 1 Graduate Program in Health Sciences, School of Medicine, Pontifícia Universidade Católica do Paraná (PUCPR), Curitiba 80215-901, Brazil; [email protected] (R.H.H.); [email protected] (P.C.T.) 2 Department of Biological Sciences, Bauru School of Dentistry, University of São Paulo, Bauru 17012-901, Brazil; [email protected] * Correspondence: [email protected]; Tel.: +55-41-991-864-747 Abstract: Temporomandibular joint dysfunction (TMD) is a multifactorial condition that impairs human’s health and quality of life. Its etiology is still a challenge due to its complex development and the great number of different conditions it comprises. One of the most common forms of TMD is anterior disc displacement without reduction (DDWoR) and other TMDs with distinct origins are condylar hyperplasia (CH) and mandibular dislocation (MD). Thus, the aim of this study is to identify the protein expression profile of synovial fluid and the temporomandibular joint disc of patients diagnosed with DDWoR, CH and MD. Synovial fluid and a fraction of the temporomandibular joint disc were collected from nine patients diagnosed with DDWoR (n = 3), CH (n = 4) and MD (n = 2). Samples were subjected to label-free nLC-MS/MS for proteomic data extraction, and then bioinformatics analysis were conducted for protein identification and functional annotation. The three Citation: Doetzer, A.D.; Herai, R.H.; TMD conditions showed different protein expression profiles, and novel proteins were identified Buzalaf, M.A.R.; Trevilatto, P.C. -
Keratin Remodelling in Stress Tan Tong San National
KERATIN REMODELLING IN STRESS TAN TONG SAN NATIONAL UNIVERSITY OF SINGAPORE 2012 i KERATIN REMODELLING IN STRESS TAN TONG SAN (B. Sc. (Hons.), NUS) A THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY NUS Graduate School for Integrative Sciences and Engineering NATIONAL UNIVERSITY OF SINGAPORE 2012 ii iii ACKNOWLEDGEMENTS I would like to express my deepest gratitude to my supervisor, Prof. Birgit Lane, for her guidance and mentorship, and for giving me the opportunity, independence and resources to conduct my research. Her depth of knowledge and passion for scientific discovery have been a great source of inspiration and motivation for me throughout these four years of PhD endeavour, and will continue to be in the future. I would also like to thank my thesis advisory committee, Prof. Michael Raghunath and A/Prof. Edward Manser, for their critical feedback along the way. My sincere thanks and appreciation also go to John Common, for his insightful comments and suggestions throughout the course of this project. I would also like to acknowledge Ildiko for initiating the keratin phosphorylation project. Special thanks also go to Cedric, Chida, Darren, Gopi, Nama, John Lim, Delina, Chye Ling, Huijia and Declan, for their help in research techniques. I am most fortunate to be part of the EBL lab, a stimulating and lively place to work in. Thanks go to Kenneth, Zhou Fan, Paula, Chai Ling, Christine, Yi Zhen, Rosita, Vivien and Giorgiana, fellow students who join me in the pursuit of a doctorate. Appreciation is also extended to Iskandar, Jun Xian, Carol, Anita, Yi Ling, Ting Ting and other lab members for their support and help. -
9.4 | Intermediate Filaments
354 9.4 | Intermediate Filaments The second of the three major cytoskeletal Microtubule elements to be discussed was seen in the electron microscope as solid, unbranched Intermediate filaments with a diameter of 10–12 nm. They were named in- filament termediate filaments (or IFs ). To date, intermediate filaments have only been identified in animal cells. Intermediate fila- ments are strong, flexible, ropelike fibers that provide mechani- cal strength to cells that are subjected to physical stress, Gold-labeled including neurons, muscle cells, and the epithelial cells that line anti-plectin the body’s cavities. Unlike microfilaments and microtubules, antibodies IFs are a chemically heterogeneous group of structures that, in Plectin humans, are encoded by approximately 70 different genes. The polypeptide subunits of IFs can be divided into five major classes based on the type of cell in which they are found (Table 9.2) as well as biochemical, genetic, and immunologic criteria. Figure 9.41 Cytoskeletal elements are connected to one another by We will restrict the present discussion to classes I-IV, which are protein cross-bridges. Electron micrograph of a replica of a small por- found in the construction of cytoplasmic filaments, and con- tion of the cytoskeleton of a fibroblast after selective removal of actin sider type V IFs (the lamins), which are present as part of the filaments. Individual components have been digitally colorized to assist inner lining of the nuclear envelope, in Section 12.2. visualization. Intermediate filaments (blue) are seen to be connected to IFs radiate through the cytoplasm of a wide variety of an- microtubules (red) by long wispy cross-bridges consisting of the fibrous imal cells and are often interconnected to other cytoskeletal protein plectin (green). -
Purification, Characterization and Molecular Cloning of Muscle Paranemin Philip Mark Hemken Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1996 Purification, characterization and molecular cloning of muscle paranemin Philip Mark Hemken Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Cell Biology Commons, and the Molecular Biology Commons Recommended Citation Hemken, Philip Mark, "Purification, characterization and molecular cloning of muscle paranemin " (1996). Retrospective Theses and Dissertations. 11153. https://lib.dr.iastate.edu/rtd/11153 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfihn master. UMI fihns the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely a£fect reproduction. In the unlikely event that the author did not send UMl a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, dra'wrags, charts) are reproduced by sectioning the ori^al, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overiaps. -
A New Look Into an Old Problem: Keratins As Tools to Investigate Determmanon, Morphogenesis, and Differentiation in Skin
Downloaded from genesdev.cshlp.org on October 10, 2021 - Published by Cold Spring Harbor Laboratory Press A new look into an old problem: keratins as tools to investigate determmanon, morphogenesis, and differentiation in skin Raphael Kopan and Elaine Fuchs Departments of Molecular Genetics and Cell Biology and Biochemistry and Molecular Biology, The University of Chicago, Chicago, Illinois 60637 USA We have investigated keratin and keratin mRNA expression during (1) differentiation of stem cells into epidermis and hair follicles and (2) morphogenesis of follicles. Our results indicate that a type I keratin K14 is expressed early in embryonal basal cells. Subsequently, its expression is elevated in the basal layer of developing epidermis but suppressed in developing matrix cells. This difference represents an early and major biochemical distinction between the two diverging cell types. Moreover, because expression of this keratin is not readily influenced by extracellular regulators or cell culture, it suggests a well-defined and narrow window of development during which an irreversible divergence in basal and matrix cells may take place. In contrast to KI4, which is expressed very early in development and coincident with basal epidermal differentiation, a hair- specific type I keratin and its mRNA is expressed late in hair matrix development and well after follicle morphogenesis. Besides providing an additional developmental difference between epidermal and hair matrix cells, the hair-specific keratins provide the first demonstration that keratin expression may be a consequence rather than a cause of cell organization and differentiation. [Key Words: Hair-specific keratins; keratin mRNA expression; hair follicle morphogenesis] Received September 28, 1988; revised version accepted November 22, 1988. -
Types I and II Keratin Intermediate Filaments
Downloaded from http://cshperspectives.cshlp.org/ on October 10, 2021 - Published by Cold Spring Harbor Laboratory Press Types I and II Keratin Intermediate Filaments Justin T. Jacob,1 Pierre A. Coulombe,1,2 Raymond Kwan,3 and M. Bishr Omary3,4 1Department of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205 2Departments of Biological Chemistry, Dermatology, and Oncology, School of Medicine, and Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, Maryland 21205 3Departments of Molecular & Integrative Physiologyand Medicine, Universityof Michigan, Ann Arbor, Michigan 48109 4VA Ann Arbor Health Care System, Ann Arbor, Michigan 48105 Correspondence: [email protected] SUMMARY Keratins—types I and II—are the intermediate-filament-forming proteins expressed in epithe- lial cells. They are encoded by 54 evolutionarily conserved genes (28 type I, 26 type II) and regulated in a pairwise and tissue type–, differentiation-, and context-dependent manner. Here, we review how keratins serve multiple homeostatic and stress-triggered mechanical and nonmechanical functions, including maintenance of cellular integrity, regulation of cell growth and migration, and protection from apoptosis. These functions are tightly regulated by posttranslational modifications and keratin-associated proteins. Genetically determined alterations in keratin-coding sequences underlie highly penetrant and rare disorders whose pathophysiology reflects cell fragility or altered -
Comparative Proteomics Analysis of Primary Cutaneous Amyloidosis
3004 EXPERIMENTAL AND THERAPEUTIC MEDICINE 14: 3004-3012, 2017 Comparative proteomics analysis of primary cutaneous amyloidosis DAXING CAI1, YANG LI2, CHUNLEI ZHOU1, YULIN JIANG2, JIAN JIAO1 and LIN WU3 1Department of Dermatology, Qilu Hospital, Shandong University, Jinan, Shandong 250012; 2Beijing Protein Innovation Co., Ltd., Beijing 101318; 3Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, P.R. China Received August 16, 2016; Accepted May 25, 2017 DOI: 10.3892/etm.2017.4852 Abstract. Primary cutaneous amyloidosis (PCA) is a local- (adjusted P<0.001). KEGG analysis indicated that the upregu- ized skin disorder that is characterized by the abnormal lated proteins were significantly enriched in the signaling deposition of amyloid in the extracellular matrix (ECM) of pathways of cell communication, ECM receptor interaction the dermis. The pathogenesis of PCA is poorly understood. and focal adhesion (adjusted P<0.001). Furthermore, the The objective of the present study was to survey proteome upregulated proteins were enriched in the molecular func- changes in PCA lesions in order to gain insight into the tion of calcium ion binding, and the calcium binding proteins molecular basis and pathogenesis of PCA. Total protein from calmodulin-like protein 5, S100 calcium-binding protein A7 PCA lesions and normal skin tissue samples were extracted (S100A7)/fatty-acid binding protein and S100A8/A9 exhib- and analyzed using the isobaric tags for relative and abso- ited the highest levels of upregulation in PCA. This analysis lute quantitation technique. The function of differentially of differentially expressed proteins in PCA suggests that expressed proteins in PCA were analyzed by gene ontology increased focal adhesion, differentiation and wound healing is (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) associated with the pathogenesis of PCA. -
Exploring Molecular Mechanisms Controlling Skin Homeostasis and Hair Growth
Exploring Molecular Mechanisms Controlling Skin Homeostasis and Hair Growth. MicroRNAs in Hair-cycle-Dependent Gene Regulation, Hair Growth and Associated Tissue Remodelling. Item Type Thesis Authors Ahmed, Mohammed I. Rights <a rel="license" href="http://creativecommons.org/licenses/ by-nc-nd/3.0/"><img alt="Creative Commons License" style="border-width:0" src="http://i.creativecommons.org/l/by- nc-nd/3.0/88x31.png" /></a><br />The University of Bradford theses are licenced under a <a rel="license" href="http:// creativecommons.org/licenses/by-nc-nd/3.0/">Creative Commons Licence</a>. Download date 02/10/2021 08:52:54 Link to Item http://hdl.handle.net/10454/5204 University of Bradford eThesis This thesis is hosted in Bradford Scholars – The University of Bradford Open Access repository. Visit the repository for full metadata or to contact the repository team © University of Bradford. This work is licenced for reuse under a Creative Commons Licence. Exploring Molecular Mechanisms Controlling Skin Homeostasis and Hair Growth MicroRNAs in Hair-cycle-Dependent Gene Regulation, Hair Growth and Associated Tissue Remodelling Mohammed Ikram AHMED BSc, MSc Submitted for the degree of Doctor of Philosophy Centre for Skin Sciences Division of Biomedical Sciences School of life Sciences University of Bradford 2010 Dedicated To my daughter Misba Ahmed and my Family II Abud-Darda (May Allah be pleased with him) reported; The messenger of Allah (PBUH) said, “He who follows a path in quest of knowledge, Allah will make the path of Jannah (heaven) easy to him. The angels lower their wings over the seeker of knowledge, being pleased with what he does. -
Disease Severity Correlates with Position of Keratin Point Mutations In
Proc. Natl. Acad. Sci. USA Vol. 90, pp. 3197-3201, April 1993 Medical Sciences Disease severity correlates with position of keratin point mutations in patients with epidermolysis bullosa simplex (keratin disorder/10-nm filament structure) ANTHONY LETAI, PIERRE A. COULOMBE*, MARY BETH MCCORMICK, QIAN-CHUN Yu, ELIZABETH HUTTON, AND ELAINE FUCHSt Howard Hughes Medical Institute, Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL 60637 Communicated by Janet D. Rowley, January 4, 1993 ABSTRACT Keratins are the major structural proteins of (EH) is another autosomal dominant, blistering skin disease. the epidermis. Recently, it was discovered that point mutations While EH is also typified by mechanical stress-dependent cell in the epidermal keratins can lead to the blistering skin diseases cytolysis, it differs from EBS in that it is the suprabasal epidermolysis bullosa simplex (EBS) and epidermolytic hyper- epidermal cells that exhibit cell degeneration (14). EH is also keratosis (EH), involving epidermal cell fragility and rupture a keratin disorder, in this case involving point mutations in upon mechanical stress. In this study, we demonstrate a the differentiation-specific keratins Kl and K10 (18-20). correlation between disease severity, location of point muta- The secondary structures of all the epidermal keratins are tions within the keratin polypeptides, and degree to which these similar and consist of a central, 310-amino acid residue rod mutations perturb keratin filament structure. Interestingly, of domain, predicted to be largely a-helical and containing the 11 EBS or EH mutations thus far identified, 6 affect a single throughout a heptad repeat ofhydrophobic residues, enabling highly evolutionarily conserved arginine residue, which, when the two keratins of a pair to intertwine about one another in mutated, markedly perturbs keratin filament structure and a coiled-coil fashion (21). -
Skeletal Actin Induces a Subset of Muscle Genes Independently of Muscle Differentiation and Withdrawal from the Cell Cycle
RESEARCH ARTICLE 513 α-Skeletal actin induces a subset of muscle genes independently of muscle differentiation and withdrawal from the cell cycle Peter W. Gunning1,3,4, Vicki Ferguson1,3, Karen J. Brennan2,* and Edna C. Hardeman2,‡ 1Cell Biology Unit and 2Muscle Development Unit, Children’s Medical Research Institute, Locked Bag 23, Wentworthville, NSW, 2145, Australia 3Oncology Research Unit, The New Children’s Hospital, PO Box 3515, Parramatta, NSW, 2124, Australia 4Department of Paediatrics and Child Health, University of Sydney, Sydney, NSW 2006, Australia *Present address: EMBL Heidelberg, Meyerhofstraße 1, Postfach 102209, D-69012 Heidelberg, Germany ‡Author for correspondence (e-mail: [email protected]) Accepted 14 November 2000 Journal of Cell Science 114, 513-524 © The Company of Biologists Ltd SUMMARY Muscle differentiation is characterized by the induction of characteristic of muscle differentiation were induced. genes encoding contractile structural proteins and the Stable transfectants displayed a substantial reduction repression of nonmuscle isoforms from these gene families. in cell surface area and in the levels of nonmuscle We have examined the importance of this regulated order tropomyosins and β-actin, consistent with a relationship of gene expression by expressing the two sarcomeric muscle between the composition of the actin cytoskeleton and cell actins characteristic of the differentiated state, i.e. α- surface area. The transfectants displayed normal cell cycle skeletal and α-cardiac actin, in C2 mouse myoblasts. progression. We propose that α-skeletal actin can activate Precocious accumulation of transcripts and proteins for a regulatory pathway linking a subset of muscle genes that a group of differentiation-specific genes was elicited by operates independently of normal differentiation and α-skeletal actin only: four muscle tropomyosins, two withdrawal from the cell cycle. -
Transcriptomic Insight Into the Translational Value of Two Murine
www.nature.com/scientificreports OPEN Transcriptomic insight into the translational value of two murine models in human atopic dermatitis Young‑Won Kim1,5, Eun‑A Ko2,5, Sung‑Cherl Jung2, Donghee Lee1, Yelim Seo1, Seongtae Kim1, Jung‑Ha Kim3, Hyoweon Bang1, Tong Zhou4* & Jae‑Hong Ko1* This study sought to develop a novel diagnostic tool for atopic dermatitis (AD). Mouse transcriptome data were obtained via RNA‑sequencing of dorsal skin tissues of CBA/J mice afected with contact hypersensitivity (induced by treatment with 1‑chloro‑2,4‑dinitrobenzene) or brush stimulation‑ induced AD‑like skin condition. Human transcriptome data were collected from German, Swedish, and American cohorts of AD patients from the Gene Expression Omnibus database. edgeR and SAM algorithms were used to analyze diferentially expressed murine and human genes, respectively. The FAIME algorithm was then employed to assign pathway scores based on KEGG pathway database annotations. Numerous genes and pathways demonstrated similar dysregulation patterns in both the murine models and human AD. Upon integrating transcriptome information from both murine and human data, we identifed 36 commonly dysregulated diferentially expressed genes, which were designated as a 36‑gene signature. A severity score (AD index) was applied to each human sample to assess the predictive power of the 36‑gene AD signature. The diagnostic power and predictive accuracy of this signature were demonstrated for both AD severity and treatment outcomes in patients with AD. This genetic signature is expected to improve both AD diagnosis and targeted preclinical research. Patients with atopic dermatitis (AD) ofen exhibit an itchy rash, xerosis, skin barrier defects, chronic relapses, and emotional distress, which reduces their quality of life1.