The 19th annual IEEE International Conference on Bioinformatics and Bioengineering

IEEE BIBE 2019 PROGRAM AT GLANCE

WORKSHOPS SUNDAY, OCT. 27, 2019

W4: Personalized Medicine

W6: Neuro-Imaging

MONDAY, Oct. 28, 2019

BIOINFORMATICS SESSIONS BIOMED/BIOENG SESSIONS BIOMED/BIOENG SESSIONS

B1: Proteins BM1: Health Records-1 BM2: Bio-Med Imaging-1

B2: Molecules BM3: Biomed Models-1 BM4: EEG and ECG

B3: Cells BM5-W1: Cancer Care BM6: Sensors-Vessels-1

TUESDAY, Oct. 29, 2019

BIOINFORMATICS SESSIONS BIOMED/BIOENG SESSIONS BIOMED/BIOENG SESSIONS

B4: Sequencing BM7: Health Records-2 BM8: Bio-Med Imaging-2

B5: Drugs/Diseases BM9: Biomed Models-2 BM10: EEG

B6: Computation/Biology BM11: Rehab/Robotics BM12: Sensors-Vessels-2

WEDNESDAY, Oct. 30, 2019

BIOINFORMATICS SESSIONS BIOMED/BIOENG SESSIONS BIOMED/BIOENG SESSIONS

W3: Intell-Health-1 BM13: Sensors-Vessels-3 BM14: Bio-Med Imaging-3

W3: Intell-Health-2 BM15: Sleeping/Dyslexia BM16: EEG-EOG-MRI

W5: AI-Biomarkers W2: Cardiovascular HAKATHLON

DAY TIME WORKSHOPS SUNDAY, OCT. 27, 2019 1 11:00-13:30 W4: Personalized Medicine (102, 106, 170, 182, 198, 212, 216, 237) SESSION CHAIRS: A. Kanterakis and L. Koumakis

Drugs with fingerprint SMILES similar to coxibs George Kallergis, Stelios Sfakianakis, Michalis Zervakis and Marios Spanakis

Integrated Network-based Approach for the Treatment & Prevention of IBD with Natural Products Suganya Chandrababu and Dhundy Bastola

Computational identification of metabolites for pathways related to Huntington's disease Christiana C. Christodoulou, George Minadakis, Christiana A. Demetriou, Eleni Zamba-Papanicolaou and George M. Spyrou

Clustering and classification of human microbiome data: evaluating the impact of different settings in bioinformatics workflows Debora Santo, Tatjana Lončar-Turukalo, Blaž Stres, Vladimir Crnojević and Sanja Brdar

Enhancing Clustering of single-cell RNA-seq data by Proximity Learning on Random Projected spaces, Aristidis Vrahatis, Georgios Dimitrakopoulos, Sotiris Tasoulis and Vassilis Plagianakos

Predicting pathogenic non-coding variants on imbalanced data set using cluster ensemble sampling Kai-Wen Chuang and Chien-Yu Chen

Zazz: Variant annotation and exploration of Next Generation Sequencing variants Maria Astrinaki, Alexandros Kanterakis, Helen Latsoudis, George Potamias and Dimitris Kafetzopoulos

Combining Pathway Analysis and Supervised Machine Learning for the Functional Classification of Single- Cell Transcriptomic Data Theodoros Koutsandreas, Ajdini Bajram, Chara Mastrokalou, Eleftherios Pilalis, Aristotelis Chatziioannou and Ilias Maglogiannis

13:30-14:30 BREAK 14:30-16:40 W6: Neuro-Imaging (50, 97, 126, 186, 259, 260, 267, 268) SESSION CHAIRS: G. Giannakakis and M. Antonakakis

A Comparison of Inverse Problem Methods for source localization of Epiliptic MEG Spikes Nawel Jmail, Abir Hadriche, Ichrak Behy, Amal Necibi and Chokri Ben Amar

Individualized targeting and optimization of multi-channel transcranial direct current stimulation in drug- resistant epilepsy Marios Antonakakis, Stefan Rampp, Christoph Kellinghaus, Carsten H. Wolters and Gabriel Moeddel

Combined EEG/MEG Source Reconstruction of Epileptic Activity using a Two-Phase Spike Clustering Approach Vasileios S. Dimakopoulos, Marios Antonakakis, Gabriel Moeddel, Jörg Wellmer, Stefan Rampp, Michalis Zervakis and Carsten H. Wolters

High-Frequency Oscillations in Epilepsy: A Short Revie Matthew Fenech, Stefano Seri and Manousos Klados

Automatic absence seizure detection evaluating matching pursuit features of EEG signals Katerina Giannakaki, Giorgos Giannakakis, Pelagia Vorgia, Manousos Klados and Michalis Zervakis

Applications of PET imaging in epilepsy Georgios Papadakis, Giorgos Giannakakis, Pelagia Vorgia, Apostolos Karantanas and Kostas Marias

Seizure detection using common spatial patterns and classification techniques Giorgos Giannakakis, Nikolaos Tsekos, Katerina Giannakaki, Kostas Michalopoulos, Pelagia Vorgia and Michalis Zervakis

BIBE2019 Final Program 2 / 11 DAY TIME DAY-2: MONDAY, Oct. 28, 2019 2 08:00-08:10 OPENING WELCOME Keynote Speech: Sergio Cerruti, “Advances in Biomedical Signal Processing: Multivariate, Multimodal, 08:10-09:00 Multiorgan and Multiscale Integration of Information for Precision Medicine and Big Data Analysis” 09:00-11:20 BIOINFORMATICS BIOMED/BIOENGR-1 BIOMED/BIOENGR-2 B1: Proteins BM1: Health Records-1 BM2: BioMed Imaging-1 (28, 52, 141, 165, 185, 206, 223) (3, 13, 25, 39, 48, 66, 113) (5, 24, 68, 85, 99, 120) Chair: O. Maruyama Chairs: M. Tsiknakis & H. Chair: K. Nikita Kondylakis

Exit regions of cavities in proteins Model Fusion to Enhance the Development and Evaluation of Martin Manak, Alexey Anikeenko Clinical Acceptability of Long- Advanced Image Analysis and Ivana Kolingerova Term Glucose Predictions Techniques for Pediatric Deep Maxime De Bois, Mehdi Ammi and Vein Thrombosis Imaging Scans De(con)struction of the lazy-F Mounîm El Yacoubi Kostas Kardaras, Nikos Apostolou, loop: improving performance of George I. Lambrou, Michail Sarafidis Smith Waterman alignment Fall Detection in EHR using Word and Dimitrios Koutsouris Roman Snytsar Embeddings and Deep Learning Henrique Santos, Renata Vieira, Deep Supervised Hashing through DegSampler3: Pairwise Amanda Silva, Maria Carolina Ensemble CNN Feature Extraction Dependency Model in Maciel, Haline Maria Burin and and Low-rank Matrix Degradation Motif Site Prediction Janete Urbanetto Factorization for Retinal Image of Substrate Protein Sequences Retrieval of Diabetic Retinopathy Osamu Maruyama and Fumiko The Role and Prospects of IoT and W.O.K.I.S. Wijesinghe, Lakmini Matsuzaki Cloud Computing in Remote Chathurika and Charith Chitraranjan Health Monitoring The effect of a spastic ataxia Euripides Petrakis, Stelios Sotiriadis, Predicting Eye Fixations Using associated GBA2 mutation on Kostas Tsakos, Soultanopoulos Computer Vision Techniques protein-protein interactions and Theodoros and Pelagia Tsiachri Ada Alevizaki, Nikos Melanitis and pathways Renta Konstantina Nikita Andrea Kakouri, Christina Votsi, Marios Tomazou, Kyproula Pseudonymisation with break- Correlation of Vertebral Absolute Christodoulou and George Spyrou the-glass compatibility for health Axial Rotations in CAD 3D Models records in federated services of Adolescent Idiopathic Scoliosis Rosetta Ligand-Protein Docking Micael Pedrosa, André Zúquete and Non-invasively Diagnosed with Self-Adaptive Differential Carlos Costa Saša Ćuković, Vanja Luković, Wiliam Evolution R. Taylor, Wolfgang Birkfellner, Pedro Henrique Narloch and Marcio A Mobile App Architecture for Radu Emanuil Petruse and Nenad Dorn Accessing EMRs Using XDS and Filipović FHIR SpotDSQ: A 2D-gel image analysis Yannis Petrakis, Angelina Kouroubali Motor Imagery Classification via tool for protein spot detection, and Dimitrios Katehakis Clustered-Group Sparse segmentation and quantification Representation Eirini Kostopoulou, Stamos ProMiSi Architecture – A tool for Vangelis Oikonomou, Spiros Katsigiannis and Dimitris Maroulis the estimation of the progression Nikolopoulos and Ioannis of multiple sclerosis disease using Kompatsiaris AFP-CKSAAP: Prediction of MRI Antifreeze Proteins Using Evanthia Tripoliti, Styliani Zelilidou, A spline approach to parallel-hole Composition of k-Spaced Amino Kostas Vlahos, Spiridon Konitsiotis collimator deblurring for aSRT- Acid Pairs with Deep Neural and Dimitrios Fotiadis reconstructed SPECT images Network Nicholas Protonotarios, Antonios Muhammad Usman and Jeong A Lee Parametric Transfer Learning Charalambopoulos, George Kastis, based on the Fisher Divergence Krzysztof Kacperski and Athanassios for Well-being Prediction Fokas Eirini Christinaki, Tasos Papastylianou, Riccardo Poli and Luca Citi

11:20-13:00 LUNCH BREAK

BIBE2019 Final Program 3 / 11

Keynote Speech: Carsten Wolters, “Reconstruction and manipulation of neuronal networks in the 13:00-13:50 Human Brain”

13:50-16:10 BIOINFORMATICS-2 BIOMED/BIOENGR-3 BIOMED/BIOENGR-4 B2: Molecules BM3: Biomed Models-1 BM4: EEG and ECG (19, 42, 100, 104, 105, 128, 175) (18, 36, 60, 70, 117, 155) (17, 22, 34, 53, 64, 78, 87) CHAIR: G. Spyrou CHAIR: N. Tsekos CHAIR: H. Shinoda

Identification Novel Peptides The Use of Computer based Test Workflow Designer - A web Conjugated to HIV1 Tat Peptide Batery for the Assessment of application for visually designing to Inhibit Ebola Virus Entry by Cognitive Functions in Elite-Level EEG signal processing pipelines Targeting Niemann Pick C1 Strength Training Petr Ježek and Lukáš Vařeka Protein Melda Pelin Yargic, Leyla Aydin, Mutiara Saragih, Filia Stephanie, Kenan Erdagi and Erhan Kiziltan ECG Beat Classification by Ahmad Husein Alkaff and Usman Temporal Logic Synthesis Sumo Friend Tambunan GPU Implementation of Adaptive Jun Zhou and Weng-Fai Wong Exponential Network Parallel Implementation of Motif- Neuromodelling Psychophysiological effects of Based Clustering for HT-SELEX Alexandros Neofytou, George comfortable walking exercise on Dataset Chatzikonstantis, Ioannis a working memory task Takayoshi Ono, Shintaro Kato, Koichi Magkanaris, George Smaragdos, Hiroto Tamura, Hiroshi Hagiwara, Ito, Hirotaka Minagawa, Katsunori Christos Strydis and Dimitrios Koji Kashihara and Hiroyuki Shinoda Horii, Ikuo Shiratori, Iwao Waga and Soudris Takafumi Aoki Smoother Adaptive Parametric Classification of Sleep Stages for Spectrograms: An application to Antioxidative capacity of evernic Healthy Subjects and Patients EEG under general anesthesia acid and its interactions with With Minor Sleep Disorders Kriton Konstantinidis and Emery TDP1 Christos Timplalexis, Konstantinos Brown Jelena Đorović, Svetlana Jeremić, Diamantaras and Ioanna Chouvarda Nedeljko Manojlović, Dejan Analyzing the Recognition of Milenković and Zoran Marković Automatic Scoring of Diabetic Color Exposure and Imagined foot Ulcers through Deep CNN Color from EEG signals Nanopore Guided Assembly of based Feature Extraction with Alejandro Antonio Torres-Garcia and Segmental Duplications near Low Rank Matrix Factorization Marta Molinas Telomeres Lakmini Chathurika, W.O.K.I.S. Eleni Adam, Tunazzina Islam, Desh Wijesinghe and Indika Perera On the use of ECG and EMG Ranjan and Harold Riethman signals for question difficulty Preliminary Evaluation of Robotic level prediction in the context of Exploring Machine Learning Transrectal Biopsy System on an Intelligent Tutoring Systems Techniques to Improve Peptide Interventional Planning Software Fehaid Alqahtani, Stamos Identification Jose Velazco-Garcia, Nikhil Navkar, Katsigiannis and Naeem Ramzan Fawad Kirmani, Bryan Lane and John Shidin Balakrishnan, Julien Rose Abinahed, Abdulla Al-Ansari, An Effective Moment of Velocity Georges Yunes, Adham Darweesh, Feature Extraction for ECG Fibrotic Disease Networks Khalid Al-Rumaihi, Eftychios Classification Using Deep highlighting common molecular Christoforou, Ernst Leiss, Mansour Learning mechanisms behind fibrosis: Karkoub and Nikolaos Tsekos Mohsen Dorraki, Anahita Special focus on idiopathic Fouladzadeh, Andrew Allison and pulmonary fibrosis MedGaze: Gaze Estimation on Derek Abbott Evangelos Karatzas, Alex Delis, WCE Images Based on a CNN George Kolios and George Spyrou Autoencoder George Dimas, Dimitris Iakovidis and Finding High-Order Homologous Anastasios Koulaouzidis Microbe Community Modules via Network Embedding Yunpeng Cai, Juan He, Qianyin Li, Kai Zhang and Zhiyong Tao

16:10-16:20 BREAK

BIBE2019 Final Program 4 / 11 16:20-18:40 BIOINFORMATICS-3 BIOMED/BIOENGR-5 BIOMED/BIOENGR-6 B3: Cells BM5-W1: Cancer Care BM6: Sensors-Vessels-1 (32, 54, 63, 77, 116, 197, 230) (61, 189, 190, 213, 248, 258, 266 (12, 15, 33, 40, 41, 57, 67) CHAIR: H. Matsuda CHAIRS: M. Tsiknakis & H. CHAIR: N. Filipovic Kondylakis

Importance of Feature Weighing Cervical Cancer Diagnosis using Detecting Heart Anomalies Using in Cervical Cancer Subtypes CervixNet - A Deep Learning Mobile Phones and Machine Identification Approach Learning Madhumita Singh and Sushmita Rohan Gorantla, Rajeev Kumar Elhoussine Talab, Omar Mohamed, Paul Singh, Rohan Pandey and Mayank Labeeba Begum, Fadi Aloul and Jain Assim Sagahyroon Analyzing Leukocyte Migration Trajectories by Deformable Image Using Electronic Patient Reported Correlation of DWI and DCE MRI Matching Outcomes to Foster Palliative Markers for the Study of Hironori Shigeta, Shigeto Seno, Cancer Care: the MyPal Approach Perfusion of the Lower Limb in Yutaka Uchida, Junichi Kikuta, Christos Maramis, Christina Patients with Peripheral Arterial Masaru Ishii and Hideo Matsuda Karamanidou, Fatima Schera, Disease Stephan Kiefer, Lefteris Koumakis, Georgios S. Ioannidis, Katerina Comparison of cell growth on the Konstantinos Marias, Stefan Nikiforaki and Apostolos Karantanas poly (lactic acid) surface coated Hoffmann, Heather Parker, Jonathan with separate collagen fibrils with Reston, Sheila Payne, Sarka SD-Unet:A Structured Dropout and without plasma treatment Pospisilova, Richard Rosenquist, Form U-Net for Retinal Vessel Yury Polikarpov, Alexey Romashkin, Paolo Ghia, Helen Papadaki, Annette Segmentation Denis Levin, Nikolay Struchkov, Sander, Michael Doubek, Norbert Changlu Guo, Márton Szemenyei, Evgeny Alexandrov, Irina Suetina, Graf, Julie Ling, Julia Downing, Yang Pei, Yugen Yi and Wei Zhou Marina Mezentseva and Vladimir Elpida Pavi and Vassilis Koutkias Nevolin User-independent classification Breast cancer heterogeneity of emotions in a mixed arousal- Inter Disease Relations Based on investigation: multiple k-means valence model Human Biomarkers by Network clustering approach Mauro Nascimben, Thomas Zoëga Analysis Joanna Tobiasz, Christos Hatzis and Ramsøy and Luis Emilio Bruni Shaikh Farhad Hossain, Altaf-Ul Joanna Polanska Amin, Shigehiko Kanaya, Ming Repeatability Study on a Classifier Huang and Naoaki Ono OncoNetExplainer: Explainable for Gastric Cancer Detection from Predictions of Cancer Types Based Breath Sensor Data Nuclei Detection Using Residual on Gene Expression Data Emmi Turppa, Inese Polaka, Edgars Attention Feature Pyramid Rezaul Karim, Michael Cochez, Oya Vasiljevs, Juha M. Kortelainen, Gidi Networks Beyan, Stefan Decker, and Christoph Shani, Marcis Leja and Hossam Panagiotis Dimitrakopoulos, Giorgos Lange Haick Sfikas and Christophoros Nikou Connected Health as enabler of Simulation of Deployment of Comparison of Brain Networks Cancer Patient Support Multiple Stents Within based on Predictive Models of Gabriel Signorelli Deformable Artery Connectivity Tijana Djukic, Igor Saveljic, Gualtiero Fani Deligianni, Jonathan Clayden Computational modeling of Pelosi, Oberdan Parodi and Nenad and Guang-Zhong Yang psychological resilience Filipovic trajectories during breast cancer Stability Investigation Using treatment Smeared FE model of heart wall: Hydrogen Bonds For Different Georgios Manikis, Konstantina electrophysiology coupled with Mutations And Drug Resistance in Kourou, Paula Poikonen-Saksela, muscle mechanics Non-Small Cell Lung Cancer Haridimos Kondylakis, Evangelos Milos Kojic, Miljan Milosevic, Patients Karademas, Kostas Marias, Dimitrios Vladimir Simic, Bogdan Milicevic, Avirup Ghosh and Hong Yan Katehakis, Lefteris Koumakis, Vladimir Geroski and Nenad Filipovic Angelina Kouroubali, Ruth Pat- Horenczyk, Dimitrios Fotiadis, Manolis Tsiknakis and Panagiotis Simos

DESIREE DEMO - a web-based software ecosystem for the personalized, collaborative and multidisciplinary management of primary breast cancer Nekane Larburu, Naiara Muroand Ivan Macia

BIBE2019 Final Program 5 / 11 DAY TIME DAY-3: TUESDAY, Oct. 29, 2019

3 08:10-09-00 Keynote Speech: Metin Akay, “Brain Cancer Chip for Precision Medicine”

09:00-11:20 BIOINFORMATICS-4 BIOMED/BIOENGR-7 BIOMED/BIOENGR-8 B4: Sequencing BM7: Health Records-2 BM8: BioMed Imaging-2 (9, 111, 114, 144, 226, 228, 264, (73, 180, 211, 219, 238, 257, 272) (95, 130, 138, 148, 156, 202, 265) 271) CHAIR: D. Koutsouris CHAIR: A. Conci CHAIR: M. Masseroli

Regressions of Clustered Gene MORPHER - A Hybrid Platform to Organs-at-risk contouring on Expression Data Manifest Tumor- Support Modeling of Outcome head CT for RTplanning using 3D Specific Genes in Urinary Bladder and Risk Prediction in Health Slicer– a preliminary study Cancer Research Franck Desaize, Nolwenn Jegou, Michail Sarafidis, Apostolos Harry Freitas da Cruz, Benjamin Gobert Lee, Mariusz Bajger, Oscar Zaravinos, Dimitra Iliopoulou, Bergner, Orhan Konak, Frederic Acosta, Julie Leseur, Renaud De Dimitrios Koutsouris and George I. Schneider, Philipp Bode, Conrad Crevoisier and Martin Caon Lambrou Lempert and Matthieu-P. Schapranow Development of a user-friendly Exploring Systematic Errors in application for DICOM image Sequencing Technologies Automatic Estimation of the segmentation and 3D Shamima Nasrin and Atif Rahman Nutritional Composition of Foods visualization of a brain tumor as part of the GlucoseML Type 1 Tijana Sustersic, Vesna Rankovic and Technology and Species Diabetes Self-Management Nenad Filipovic independent Simulation of System Sequencing data and Genomic Fotis Konstantakopoulos, Eleni A novel approach for the Variants Georga, Kostas Klampanas, Dimitris segmentation of breast thermal Filippo Geraci, Riccardo Massidda Rouvalis, Nikolaos Ioannou and images combining image and Nadia Pisanti Dimitrios Fotiadis processing and collective intelligence De novo sequence-based method Multi-source ensemble transfer Maira Beatriz Hernandez Moran, for ncRPI prediction using approach for medical text Guilherme Henrique Apostolo, Adriel structural information auxiliary diagnosis Araújo, Eduardo Andrade, José Michele Leone, Marta Galvani and Xinfa Li, Yun Yang and Po Yang Viterbo Filho and Aura Conci Marco Masseroli One-year Mortality Prediction in Towards the Substitution of Real Parallelized pipeline for whole ICU Patients with Diagnosis of with Artificially Generated genome shotgun metagenomics Sepsis Driven by Population Endoscopic Images for CNN with GHOSTZ-GPU and MEGAN Similarities Training Masahito Ohue, Marina Yamasawa, J.E Garcia-Gallo, N.J Fonseca-Ruiz, Dimitris Diamantis, Athena Zacharia, Kazuki Izawa and Yutaka Akiyama L.A Celi and J.F Duitama-Muñoz Dimitris Iakovidisand Anastasios Koulaouzidis MemAlign: A Memory Structure Needle Optimization for Wrist- to Accelerate Gene Sequencing Based Electronic Mosquito: Pilot Image segmentation of the Meysam Roodi and Andreas Human Testing pulmonary acinus imaged by Moshovos Jonas Teixeira, Robert Wilkes, Orly synchrotron X-ray tomography Yadid-Pecht and Martin Mintchev Branko Arsić, Mihailo Obrenović, Multithreaded Parallel Sequence Miloš Anić, Akira Tsuda and Nenad Alignment Based on Needleman- Engaging Conversational Agents Filipović Wunch Algorithm in Palliative Care: A feasibility Veska Gancheva and Ivaylo Georgiev study and Preliminary Blood flow SPH simulation with Assessment elastic deformation of blood Combined statistics for Maria Chatzimina, Lefteris vessels differential expression analysis of Koumakis, Kostas Marias and Antoni Junior and Helton Bíscaro RNA-sequencing data Manolis Tsiknakis Dionysios Fanidis and Panagiotis Moulos Evaluation of a Serious Game promoting Nutrition and Food Literacy: Experiment Design and Preliminary Results Konstantinos Mitsis, Konstantia Zarkogianni, Kalliopi Dalakleidi, George Mourkousis and Konstantina Nikita

BIBE2019 Final Program 6 / 11 11:20-13:00 LUNCH BREAK

Keynote Speech: Alejandro F. Frangi, “Computational Medicine: from advanced diagnosis and 13:00-13:50 interventional planning to in silico trials of endovascular devices”

13:50-16:10 BIOINFORMATICS-5 BIOMED/BIOENGR-9 BIOMED/BIOENGR-10 B5: Drugs/Diseases BM9: Biomed Models-2 BM10: EEG (29, 81, 98, 133, 184, 188, 242) (51, 124, 210, 221, 236, 249, 255) (71, 83, 112, 166, 168, 202, 207) CHAIR: G. Spyrou CHAIR: V. Sakkalis CHAIR: M. Zervakis

Adaptive short term ahead tumor A Wearable Ultrasound Estimation of brain dynamics growth inhibition prediction Methodology for Creating a Real under visuomotor task using subjected in anticancer agents Time Near 3D Model of the Heart functional connectivity analysis given in combination Garrett Goodman and Nikolaos based on graph theory Sotirios Liliopoulos and George Bourbakis Thi Mai Phuong Nguyen, Xinzhe Li, Stavrakakis Yoshikatsu Hayashi, Shiro Yano and Drug-Drug Interactions Prediction Toshiyuki Kondo In silico assessment of the based on Drug Embedding and structural, functional and stability Graph Auto-Encoder Automated Assessment of Pain impact of a nonsense PRF1 Ishani Mondal, Sukannya Intensity based on EEG Signal mutation with uncertain clinical Purkayastha, Sudeshna Sarkarand Analysis significance; identified in 2 Pawan Goyal Panagiotis A. Bonotis, Dimosthenis unrelated Cypriot Triple-Negative C. Tsouros, Panagiotis N. Smyrlis, Breast Cancer patients Complex brain networks and Alexandros T. Tzallas, Nikolaos Maria Zanti, Maria A Loizidou, simulated military reactions using Giannakeas, Evripidis Glavas and Margarita Zachariou, Kyriaki a virtual reality system Markos Tsipouras Michailidou, Kyriacos Kyriacou, Oscar Mosquera, Daniel Guzmán, Andreas Hadjisavvas and George M Jhonnatan Zamudio, Jose Garcia, A Time-Frequency Distribution Spyrou Cristhian Rodriguez and Daniel Based Approach for Detecting Alfonso Botero Rosas Tonic Cold Pain using EEG Signals Deleterious Impact of Mutational Rami Alazrai, Saifaldeen Al-Rawi and Processes on Transcription Factor Monitoring of Orientation of Cells Mohammad I. Daoud Binding Sites in Human Cancer by Electric Impedance: Test on Pietro Pinoli, Eirini Stamoulakatou, Oriented Cells Using Micro Effective Connectivity in the Stefano Ceri and Rosario Michael Striped Grooves Pattern by Primary Somatosensory Network Piro Photolithography using Combined EEG and MEG Shigehiro Hashimoto and Kazuyuki Konstantinos Politof, Marios Identification of differentially Abe Antonakakis, Andreas Wollbrink, expressed subpathways using a Michalis Zervakis and Carsten H. consensus approach Banded Pair-HMM Algorithm for Wolters Panos Balomenos, Andrei Dragomir, DNA Variant Calling and Its Athanasios Tsakalidis and Hardware Accelerator Design Sparse EEG Source Localization Anastasios Bezerianos Ming-Hung Chen, Mao-Jan Lin, Yu- Under the Variational Bayesian Cheng Li and Yi-Chang Lu Framework Differences in the Progression Vangelis Oikonomou and Ioannis from Mild Cognitive Impairment Surgical Audio Guidance SurAG: Kompatsiaris to Alzheimer's Disease between extracting non-invasively APOE4 Carriers and Non-Carriers meaningful guidance information On the Entropy of Brain Anatomic Antonio Martinez-Torteya, Alejandro during minimally invasive Regions for Complex Problem Trejo-Castro, José Celaya-Padilla and procedures Solving José Tamez-Peña Alfredo Illanes, Thomas Sühn, Nazila Gonul Gunal Degirmendereli, Esmaeili, Iván Maldonado, Anna Sharlene D. Newman and Fatos T. Hybrid Modeling of Ebola Schaufler, Chien-Hsi Chen, Axel Yarman Vural Propagation Boese and Michael Friebe Cyrus Tanade, Nathanael Pate, Experiencing the Light Through Elianna Paljug, Ryan Hoffman and Normative and Fuzzy Aspects of our Skin - an EEG Study of Colored May Wang Medical AI Light on Blindfolded Subjects Aspassia Daskalopulu, Eleutherios Andreas Wulff-Abramsson, Mads Parkinson’s Disease Mid-brain Tsoukalas and Dimitrios Bargiotas Deibjerg Lind, Stine Louring Nielsen, Assessment using MR T2 Images George Palamas, Luis Emilio Bruni Sara Soltaninejad, Pengda Xu and and Georgios Triantafyllidis Irene Cheng

16:10-16:20 BREAK

BIBE2019 Final Program 7 / 11 16:20-18:40 BIOINFORMATICS-6 BIOMED/BIOENGR-11 BIOMED/BIOENGR-12 B6: Computation/Biology BM11: Rehab/Robotics BM12: Sensors-Vessels-2 (20, 134, 164, 171, 194, 201, 256) (7, 10, 46, 103, 118, 153, 209) (69, 72, 75, 79, 80, 122, 125) CHAIR: G. Potamias CHAIR: E. Petrakis CHAIR: V. Koutkias

Discovery of Potential Northern Meta-Learning for Avatar Cardiac left ventricular African Natural Product Kinematics Reconstruction in ultrasound image sequence Compounds as Dengue Virus NS5 Virtual Reality Rehabilitation recognition and tracking Methyltransferase Inhibitor: An Cristian Axenie, Armin Becher, Daria Wei-Yen Hsu in silico Approach Kurz and Thomas Grauschopf Mutiara Saragih, Filia Stephanie, BioCoStent: a holistic approach Ahmad Husein Alkaff and Usman Evolution of Biomaterials for for development of a drug-eluting Sumo Friend Tambunan Dental Implants and Futuristic stent with retinoic acid Developments Georgia Karanasiou, Savvas Towards Reproducible Tuhin Sengupta and Muthu P Kyriakidis, Dimitris Pleouras, Antonis Bioinformatics: The OpenBio-C Sakellarios, Anargyros Moulas, Scientific Workflow Environment Determination of Corneal Arsen Semertzioglou and Dimitrios Alex. Kanterakis, Galateia Iatraki, Nonlinear Viscoelastic Fotiadis Konstantina Pityanou, Lefteris Biomechanical Properties using Koumakis, Nikos Kanakaris, Nikos Corvis ST A Novel PCA-Based fMRI Noise Karacapilidis and George Potamias Aidana Zhalgas, Match Wai Lun Ko Reducing Wishart Filter to and Jong Kim Improve Diagnosis of Enabling Ontology-based Search: Neurodegeneration A Case Study in the Single-channel SSVEP-based BCI Nikhil Boddu Bioinformatics Domain for robotic car navigation in real Alexandros Kyriakakis, Lefteris world conditions Generation of virtual patients for Koumakis, Alexandros Kanterakis, Cristina Farmaki, Myrto Krana, in silico cardiomyopathies drug Galateia Iatraki, Manolis Tsiknakis Matthew Pediaditis, Emmanouil development and George Potamias Spanakis and Vangelis Sakkalis Vasileios Pezoulas, Nikos Tachos and Dimitrios Fotiadis Finding Attractors in Biological Towards a Flexible Wrist-Worn Models Based on Boolean Thermotherapy and A Low Complexity and Cost Dynamical Systems Using Hitting Thermoregulation Device Method to Diagnose Arterial Set Panagiotis Kassanos, Florent Stenosis Using Lightwave Carlos Reynaldo Portocarrero Tovar, Seichepine, Meysam Keshavarz and Wearables Eloi Araujo, Danilo Carastan-Santos, Guang-Zhong Yang George Karagannidis, Angeliki David Correa Martins Jr and Luiz Papathanasiou, Panagiotis Rozante A Semi-Autonomous Robotic Diamantoulakis, Athanasios Saratzis System for Remote Trauma and Nikolaos Saratzis Systems biology in heterogenous Assessment tissues: Integrating multiple Bharat Mathur, Anirudh Topiwala, Numerical simulation plaque *omics datasets to under-stand Saul Schaffer, Michael Kam, Hamed formation and progression in the hematopoietic differentiation Saeidi, Thorsten Fleiter and Axel left coronary artery Jens Lichtenberg, Guanjue Xiang, Krieger Igor Saveljic, Dalibor Nikolic, Tijana Elisabeth Heuston, Belinda Giardine, Djukic, Oberdan Parodi and Nenad Cheryl A. Keller, Ross Hardison and Hand-Eye Coordination: Filipovic David Bodine Automating the Annotation of Physician-Patient Interactions A Robust Neural Network-based Mathematical modelling and Daniel Gutstein, Enid Montague, method to estimate Arterial effect size analysis in support of Jacob Furst and Daniela Raicu Blood Pressure Using searching for the proteomic Photoplethysmography signature of radiotherapy toxicity Buddhishan Manamperi and Charith Kinga Leszczorz, Omid Azimzadeh, Chitraranjan Soile Topio, Michael Atkinson and Joanna Polańska

Heuristics for the Specific Substring Problem with Hamming Distance Lucas Rocha, Said Sadique, Marco A. Stefanes and Eloi Araujo

18:40-19:00 BREAK 19:00-21:00 GALA DINNER and AWARDS

BIBE2019 Final Program 8 / 11 DAY TIME DAY-4: WEDNESDAY, Oct. 30, 2019

4 08:10-09:00 Keynote Speech: Dave Robertson, “Building a Knowledge Graph for UK Health Data Science”

09:00-11:20 WORKSHOPS BIOMED/BIOENGR-13 BIOMED/BIOENGR-14 W3: Intell-Digital Health-1 BM13: Sensors-Vessels-3 BM14: BioMed Imaging-3 (8, 26, 27, 37, 68, 86, 92) (139, 147, 152, 154, 159, 167, 225) (205, 208, 232, 244, 270, 273) CHAIR: D. Tzovaras CHAIR: N. Filipovic CHAIR: A. Krieger

Design and Implementation of a Characterization and Modeling of Bone Fracture Identification in X- Precision Oxygen Delivery Control a Flexible Tetrapolar ray Images using Fuzzy Wavelet System in Facial Masks Bioimpedance Sensor and Features Petros Toumpaniaris, Panagiotis Measurements of Intestinal Michael Vasilakakis, Varvara Katrakazas, George I. Lambrou, Tissues Iosifidou, Panagiota Fragkaki and Athanasios Papanikitas, Michail Panagiotis Kassanos, Florent Dimitris Iakovidis Sarafidis, Sotiris Pavlopoulos and Seichepine and Guang-Zhong Yang Dimitrios Koutsouris BNU-Net: a Novel Deep Learning Imaging with ultrafast light pulse Approach for LV MRI Analysis in Heterogeneity in Asthma in scattering media using the Short-Axis MRI Medication Adherence DRTS method Wenhui Chu, Giovanni Molina, Nikhil Measurement Anastasios Georgakopoulos, Navkar, Christoph Eick, Aaron Holly Tibble, Amy Chan, Edwin Konstantinos Politopoulos and Becker and Nikolaos Tsekos Mitchell, Rob Horne, Mehrdad Efstratios Georgiou Mizani, Aziz Sheikh and Athanasios Towards a Novel Way to Predict Tsanas A novel methodology for Deficits After a Brain Lesion: A detection of lumen, outer wall, Stroke Example Privacy Protection with plaques and stent struts in Georgios Klados, Michalis Zervakis, Pseudonymization and coronary arteries using optical Rosalia Dacosta-Aguayo, Antonio Anonymization In a Health IoT coherence tomography Fratini and Manousos Klados System - Results from OCARIoT Savvas Kyriakidis, Antonis Project Sakellarios, Georgia Karanasiou and Prior guided segmentation and Sergio Ribeiro and Emilio Nakamura Dimitrios Fotiadis nuclei feature based abnormality detection in cervical cells Investigating motility and pattern Atherosclerotic plaque growth Ratna Saha, Mariusz Bajger and formation in pluripotent stem prediction in coronary arteries Gobert Lee cells through agent-based using a computational multi-level modeling model; the effect of diabetes Evaluation of quantitative Minhong Wang, Athanasios Tsanas, Dimitris Pleouras, Antonios features and convolutional neural Guillaume Blin and Dave Robertson Sakellarios, Georgia Karanasiou, networks for nodule Savvas Kyriakidis, Panagiota identification in thyroid Predicting Eye Fixations Using Tsompou, Vassiliki Kigka and thermographies Computer Vision Techniques Dimitrios Fotiadis Maira Beatriz Hernandez Moran, Ada Alevizaki, Nikos Melanitis and Aura Conci and Adriel Araújo Konstantina Nikita A multimodal advanced approach for the stratification of carotid Adaptation and Evaluation of A Social Robot-based Platform for artery disease Deep Learning Techniques for Prevention of Childhood Obesity Michalis D. Mantzaris, Vassiliki T. Skin Segmentation on Novel Andreas Triantafyllidis, Anastasios Potsika, Panagiotis K. Siogkas, Abdominal Dataset Alexiadis, Dimosthenis Elmas, Vassiliki I. Kigka, Vasileios C. Anirudh Topiwala, Lidia Al-Zogbi, Konstantinos Votis and Dimitrios Pezoulas, Ioannis G. Pappas, Themis Thorsten Fleiter and Axel Krieger Tzovaras P. Exarchos, Igor B. Koncar, Jaroslav Pelisek, Evangelos Andreakos and Mobistudy: an open mobile- Dimitrios I. Fotiadis health platform for clinical research An Approach Towards Automatic Dario Salvi, Jameson Lee, Carmelo Detection of Toxoplasmosis using Velardo, Rishi Arvin Goburdhun and Fundus Images Lionel Tarassenko Adithi Deborah Chakravarthy, Dilanga Abeyrathna, Mahadevan Subramaniam and Parvathi Chundi

Interpolating maps between neural response spaces for chemosensing with fruit fly antenna sensors Martin Strauch, Karl Krüger, Latha Mukunda, Alja Lüdke, Giovanni Galizia and Dorit Merhof

BIBE2019 Final Program 9 / 11 11:20-13:00 LUNCH BREAK

13:00-15:20 WORKSHOPS BIOMED/BIOENGR-15 BIOMED/BIOENGR-16 W3: Intell-Digital Health-2 BM15: Sleeping/Dyslexia BM15: EEG-EOG-MRI (93, 96, 107, 163, 178, 192) (38, 58, 145, 157, 219, 189) (214, 215, 220, 229, 251, 254) CHAIR: A. Tsanas CHAIR: M. Papadopouli CHAIR: C. Pattichis

Abnormal Behavior Detection for Automated Sleep Spindle Sparse Representations on DW- elderly people living alone Detection System using Period- MRI: A study on pancreas leveraging IoT sensors Amplitude Analysis Anastasia Pentari, Grigorios Maria Κoutli, Natalia Theologou, Panagiotis Rizogiannis, Periklis Tsagkatakis, Kostas Marias, Athanasios Tryferidis and Dimitrios Ktonas, Hara Tsekou, Thomas Georgios C. Manikis, Nikolaos Tzovaras Paparrigopoulos, Dimitris Dikeos Kartalis, Nikolaos Papanikolaou and and Errikos Chaim Ventouras Panagiotis Tsakalides Visualizing the Associations between Acupoints based on Wavelet singularity analysis for A Temporal Convolution Network Diseases They Treat CAP sleep delineation Solution for EEG Motor Imagery Kun-Chan Lan, Jun-Xiang Zhang and David Israel Medina, Martin Classification Ying-Hsiu Lin Oswaldo Mendez, Ioanna Chouvarda Na Lu, Tao Yin and Xue Jing and José Salome Murguía A Machine Learning Approach for Impedance between Micro- Non-Invasive Diagnosis of Automated Screening of Dyslexia electrodes of a Pair of Concentric Metabolic Syndrome via Dynamical Recurrence Cylinders for Estimation of Local Suparno Datta, Anne Schraplau, Analysis of Wearable Sensor Data Cell Configuration Harry Freitas da Cruz, Jan Philipp Michaela Areti Zervou, George Shigehiro Hashimoto Sachs, Frank Mayer and Erwin Tzagkarakis and Panagiotis Böttinger Tsakalides A Formal SPN Methodology for Single (1D) and Multiple Channels Recognition of breathing activity Towards a robust and accurate (2D) EEG brain Activity and medication adherence using screening tool for dyslexia with Representations/Analysis/Diagno LSTM Neural Networks data augmentation using GANs sis Dionysis Pettas, Stavros Nousias, Thomais Asvestopoulou, Victoria S. Manganas and N. Bourbakis Evaggelia Zacharaki and Manousaki, Antonis Psistakis, Erjona Konstantinos Moustakas Nikolli, Vassilios Andreadakis, Motor Imagery EEG-EOG Signals Ioannis M. Aslanides, Yannis based Brain Machine Interface Fuzzy Inference System for Risk Pantazis, Ioannis Smyrnakis and (BMI) for a Mobile Robotic Evaluation in Gestational Maria Papadopouli Assistant (MRA) Diabetes Mellitus Dulith Chinthaka, Isuru Ruhunage, Carlos Salort Sanchez, Suzanne Multi-source ensemble transfer Sanjaya Mallikarachchi, Janith Smyth, Elizabeth Tully, Joanna approach for medical text Sandaruwan and Thilina Griffin, Luke Heaphy, Niamh auxiliary diagnosis Lalitharatne Redmond, Fionnuala Breathnach, Xinfa Li, Yun Yang and Po Yang Jan Baumbach and Cristian Axenie Integrating machine learning with Functional Network Connectivity symbolic reasoning to build an Exploring telephone-quality Analysis in Absence Epilepsy explainable AI model for stroke speech signals towards Using Stargazer Mice prediction Parkinson’s disease assessment in Andreas Zacharakis, Manthos Nicoletta Prentzas, Constantinos a large acoustically non- Kampourakis, Orestis Mousouros, Pattichis, Antonis Kakas, Efthyvoulos controlled study Ganna Palagina, Jochen Meyer, Kyriacou and Andrew Nicolaides Athanasios Tsanas and Siddharth Stelios Manolis Smirnakis, Maria Arora Papadopouli and Ioannis Smyrnakis

15:20-15:30 BREAK

BIBE2019 Final Program 10 / 11 15:30-18:00 WORKSHOPS W5: Biomarkers/Radiomics W2: Cardiovascular Modeling (90, 109, 123, 137, 140, 176, 250, 263) (51, 69, 115, 129, 131, 177) SESSION CHAIRS: K. Marias & N. Papanikolaou SESSION CHAIRS: K. Marias & N. Papanikolaou

Ischemic Stroke Lesion Prediction in CT Perfusion Cardiac left ventricular ultrasound image sequence Scans Using Multiple Parallel U-Nets Following by a recognition and tracking Pixel-level Classifier Wei-Yen Hsu Mohsen Soltanpour, Russell Greiner, Pierre Boulanger and Brian Buck Interactive and Immersive Image-guided Control of Interventional Manipulators with a Prototype Comparison of machine learning algorithms and Holographic Interface oversampling techniques for urinary toxicity Cristina Morales Mojica, Jose Velazco-Garcia, Nikolaos prediction after prostate cancer radiotherapy Tsekos, Haoran Zhao, Ioannis Seimenis, Ernst Leiss, Eugenia Mylona, Clement Lebreton, Pierre Fontaine, Dipan Shah, Andrew Webb and Aaron Becker Stéphane Supiot, Nicolas Magné, Gilles Crehange, Renaud de Crevoisier and Oscar Acosta Multi-Contrast MRI Volume Alignment Via ECC Maximization Radiomics to Predict Prostate Cancer Nikolaos Nikolikos, Nefeli Lamprinou, Anastasia Boile Aggressiveness: a Preliminary Study and Emmanouil Psarakis Danila Germanese, Laura Mercatelli, Sara Colantonio, Vittorio Miele, Maria Antonietta Pascali, Claudia Caudai, Design and Simulation of Patient-Specific Tissue- Nicola Zoppetti, Roberto Carpi, Andrea Barucci, Elena Engineered Bifurcated Right Ventricle-Pulmonary Bertelli and Simone Agostini Artery Grafts using Computational Fluid Dynamics Seda Aslan, Yue-Hin Loke, Paige Mass, Kevin Nelson, Automatic Detection and Segmentation of Lung Enoch Yeung, Jed Johnson, Justin Opfermann, Hiroshi Lesions using Deep Residual CNNs Matsushita, Takahiro Inoue, Henry Halperin, Laura João B. Sá Carvalho, Mário A. T. Figueiredo and Nickolas Olivieri, Narutoshi Hibino and Axel Krieger Papanikolaou Automated Segmentation and 4-D reconstruction of Multiple Kernel Learning applied to the prediction the Heart Left Ventricle from CINE MRI of prostate cancer recurrence from MRI radiomics Giovanni Molina, Jose D. Velazco-Garcia, Dipan Shah, features Aaron T. Becker and Nikolaos V. Tsekos Diana Marcela Marín Castrillón, Pierre Fontaine, Khemara Gnep, Renaud Crevoisier, Gloria Díaz and Oscar Design and initial implementation of a Computer Acosta Aided Diagnosis System for PET/CT Solitary Pulmonary Nodule Risk Estimation Neural Network Training Data Profoundly Impacts George Tzanoukos, Pavlos Kafouris, Alexandros Texture-Based Intravascular Image Segmentation Georgakopoulos, Anastasios Gaitanis, Dimitris Maroulis, Akshay Gowrishankar, Lambros Athanasiou, Max Sofia Chatziioannou and George Spyrou Olender and Elazer Edelman

Scale-space DCE-MRI radiomics analysis based on Gabor filters for predicting breast cancer therapy response Georgios Manikis, Maria Venianaki, Iraklis Skepasianos, Georgios Papadakis, Thomas Maris, Sofia Aggelaki, Apostolos Karantanas and Kostas Marias

HACKATHLON AWARDS

CLOSING REMARKS

BIBE2019 Final Program 11 / 11