The Tutte Polynomial Via Lattice Point Counting
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Geometry of Generalized Permutohedra
Geometry of Generalized Permutohedra by Jeffrey Samuel Doker A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Mathematics in the Graduate Division of the University of California, Berkeley Committee in charge: Federico Ardila, Co-chair Lior Pachter, Co-chair Matthias Beck Bernd Sturmfels Lauren Williams Satish Rao Fall 2011 Geometry of Generalized Permutohedra Copyright 2011 by Jeffrey Samuel Doker 1 Abstract Geometry of Generalized Permutohedra by Jeffrey Samuel Doker Doctor of Philosophy in Mathematics University of California, Berkeley Federico Ardila and Lior Pachter, Co-chairs We study generalized permutohedra and some of the geometric properties they exhibit. We decompose matroid polytopes (and several related polytopes) into signed Minkowski sums of simplices and compute their volumes. We define the associahedron and multiplihe- dron in terms of trees and show them to be generalized permutohedra. We also generalize the multiplihedron to a broader class of generalized permutohedra, and describe their face lattices, vertices, and volumes. A family of interesting polynomials that we call composition polynomials arises from the study of multiplihedra, and we analyze several of their surprising properties. Finally, we look at generalized permutohedra of different root systems and study the Minkowski sums of faces of the crosspolytope. i To Joe and Sue ii Contents List of Figures iii 1 Introduction 1 2 Matroid polytopes and their volumes 3 2.1 Introduction . .3 2.2 Matroid polytopes are generalized permutohedra . .4 2.3 The volume of a matroid polytope . .8 2.4 Independent set polytopes . 11 2.5 Truncation flag matroids . 14 3 Geometry and generalizations of multiplihedra 18 3.1 Introduction . -
Arxiv:1403.0920V3 [Math.CO] 1 Mar 2019
Matroids, delta-matroids and embedded graphs Carolyn Chuna, Iain Moffattb, Steven D. Noblec,, Ralf Rueckriemend,1 aMathematics Department, United States Naval Academy, Chauvenet Hall, 572C Holloway Road, Annapolis, Maryland 21402-5002, United States of America bDepartment of Mathematics, Royal Holloway University of London, Egham, Surrey, TW20 0EX, United Kingdom cDepartment of Mathematics, Brunel University, Uxbridge, Middlesex, UB8 3PH, United Kingdom d Aschaffenburger Strasse 23, 10779, Berlin Abstract Matroid theory is often thought of as a generalization of graph theory. In this paper we propose an analogous correspondence between embedded graphs and delta-matroids. We show that delta-matroids arise as the natural extension of graphic matroids to the setting of embedded graphs. We show that various basic ribbon graph operations and concepts have delta-matroid analogues, and illus- trate how the connections between embedded graphs and delta-matroids can be exploited. Also, in direct analogy with the fact that the Tutte polynomial is matroidal, we show that several polynomials of embedded graphs from the liter- ature, including the Las Vergnas, Bollab´as-Riordanand Krushkal polynomials, are in fact delta-matroidal. Keywords: matroid, delta-matroid, ribbon graph, quasi-tree, partial dual, topological graph polynomial 2010 MSC: 05B35, 05C10, 05C31, 05C83 1. Overview Matroid theory is often thought of as a generalization of graph theory. Many results in graph theory turn out to be special cases of results in matroid theory. This is beneficial -
Parity Systems and the Delta-Matroid Intersection Problem
Parity Systems and the Delta-Matroid Intersection Problem Andr´eBouchet ∗ and Bill Jackson † Submitted: February 16, 1998; Accepted: September 3, 1999. Abstract We consider the problem of determining when two delta-matroids on the same ground-set have a common base. Our approach is to adapt the theory of matchings in 2-polymatroids developed by Lov´asz to a new abstract system, which we call a parity system. Examples of parity systems may be obtained by combining either, two delta- matroids, or two orthogonal 2-polymatroids, on the same ground-sets. We show that many of the results of Lov´aszconcerning ‘double flowers’ and ‘projections’ carry over to parity systems. 1 Introduction: the delta-matroid intersec- tion problem A delta-matroid is a pair (V, ) with a finite set V and a nonempty collection of subsets of V , called theBfeasible sets or bases, satisfying the following axiom:B ∗D´epartement d’informatique, Universit´edu Maine, 72017 Le Mans Cedex, France. [email protected] †Department of Mathematical and Computing Sciences, Goldsmiths’ College, London SE14 6NW, England. [email protected] 1 the electronic journal of combinatorics 7 (2000), #R14 2 1.1 For B1 and B2 in and v1 in B1∆B2, there is v2 in B1∆B2 such that B B1∆ v1, v2 belongs to . { } B Here P ∆Q = (P Q) (Q P ) is the symmetric difference of two subsets P and Q of V . If X\ is a∪ subset\ of V and if we set ∆X = B∆X : B , then we note that (V, ∆X) is a new delta-matroid.B The{ transformation∈ B} (V, ) (V, ∆X) is calledB a twisting. -
Matroid Polytopes and Their Volumes Federico Ardila, Carolina Benedetti, Jeffrey Doker
Matroid Polytopes and Their Volumes Federico Ardila, Carolina Benedetti, Jeffrey Doker To cite this version: Federico Ardila, Carolina Benedetti, Jeffrey Doker. Matroid Polytopes and Their Volumes. 21st International Conference on Formal Power Series and Algebraic Combinatorics (FPSAC 2009), 2009, Hagenberg, Austria. pp.77-88. hal-01185426 HAL Id: hal-01185426 https://hal.inria.fr/hal-01185426 Submitted on 20 Aug 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. FPSAC 2009, Hagenberg, Austria DMTCS proc. AK, 2009, 77–88 Matroid Polytopes and Their Volumes Federico Ardila1,y Carolina Benedetti2 zand Jeffrey Doker3 1San Francisco, CA, USA, [email protected]. 2Universidad de Los Andes, Bogota,´ Colombia, [email protected]. 3University of California, Berkeley, Berkeley, CA, USA, [email protected]. Abstract. We express the matroid polytope PM of a matroid M as a signed Minkowski sum of simplices, and obtain a formula for the volume of PM . This gives a combinatorial expression for the degree of an arbitrary torus orbit closure in the Grassmannian Grk;n. We then derive analogous results for the independent set polytope and the associated flag matroid polytope of M. -
Matroids, Cyclic Flats, and Polyhedra
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by ResearchArchive at Victoria University of Wellington Matroids, Cyclic Flats, and Polyhedra by Kadin Prideaux A thesis submitted to the Victoria University of Wellington in fulfilment of the requirements for the degree of Master of Science in Mathematics. Victoria University of Wellington 2016 Abstract Matroids have a wide variety of distinct, cryptomorphic axiom systems that are capable of defining them. A common feature of these is that they areable to be efficiently tested, certifying whether a given input complies withsuch an axiom system in polynomial time. Joseph Bonin and Anna de Mier, re- discovering a theorem first proved by Julie Sims, developed an axiom system for matroids in terms of their cyclic flats and the ranks of those cyclic flats. As with other matroid axiom systems, this is able to be tested in polynomial time. Distinct, non-isomorphic matroids may each have the same lattice of cyclic flats, and so matroids cannot be defined solely in terms of theircyclic flats. We do not have a clean characterisation of families of sets thatare cyclic flats of matroids. However, it may be possible to tell in polynomial time whether there is any matroid that has a given lattice of subsets as its cyclic flats. We use Bonin and de Mier’s cyclic flat axioms to reduce the problem to a linear program, and show that determining whether a given lattice is the lattice of cyclic flats of any matroid corresponds to finding in- tegral points in the solution space of this program, these points representing the possible ranks that may be assigned to the cyclic flats. -
Tropical Linear Algebra
Tropical Linear Algebra Jorge Alberto Olarte February 18, 2019 Joint work with Alex Fink, Benjamin Schr¨oter and Marta Panizzut Jorge Alberto Olarte Tropical Linear Algebra February 18, 2019 1 / 14 2 As the solution set of n − d linear equations. This can be represented by a matrix A? 2 K(n−d)×n where rows give the coefficients of the linear equations. 3 By its Plucker¨ coordinates. Classical linear spaces Let K be any field. A d-dimensional linear subspace L ⊆ Kn can be given in several forms: d 1 As a span of vectors d vectors v1;:::; vd 2 K . This can be represented by a d×n matrix A 2 K where the rows are given by the vectors v1;:::; vd . Jorge Alberto Olarte Tropical Linear Algebra February 18, 2019 2 / 14 3 By its Plucker¨ coordinates. Classical linear spaces Let K be any field. A d-dimensional linear subspace L ⊆ Kn can be given in several forms: d 1 As a span of vectors d vectors v1;:::; vd 2 K . This can be represented by a d×n matrix A 2 K where the rows are given by the vectors v1;:::; vd . 2 As the solution set of n − d linear equations. This can be represented by a matrix A? 2 K(n−d)×n where rows give the coefficients of the linear equations. Jorge Alberto Olarte Tropical Linear Algebra February 18, 2019 2 / 14 Classical linear spaces Let K be any field. A d-dimensional linear subspace L ⊆ Kn can be given in several forms: d 1 As a span of vectors d vectors v1;:::; vd 2 K . -
Matroid Partitioning Algorithm Described in the Paper Here with Ray’S Interest in Doing Ev- Erything Possible by Using Network flow Methods
Chapter 7 Matroid Partition Jack Edmonds Introduction by Jack Edmonds This article, “Matroid Partition”, which first appeared in the book edited by George Dantzig and Pete Veinott, is important to me for many reasons: First for per- sonal memories of my mentors, Alan J. Goldman, George Dantzig, and Al Tucker. Second, for memories of close friends, as well as mentors, Al Lehman, Ray Fulker- son, and Alan Hoffman. Third, for memories of Pete Veinott, who, many years after he invited and published the present paper, became a closest friend. And, finally, for memories of how my mixed-blessing obsession with good characterizations and good algorithms developed. Alan Goldman was my boss at the National Bureau of Standards in Washington, D.C., now the National Institutes of Science and Technology, in the suburbs. He meticulously vetted all of my math including this paper, and I would not have been a math researcher at all if he had not encouraged it when I was a university drop-out trying to support a baby and stay-at-home teenage wife. His mentor at Princeton, Al Tucker, through him of course, invited me with my child and wife to be one of the three junior participants in a 1963 Summer of Combinatorics at the Rand Corporation in California, across the road from Muscle Beach. The Bureau chiefs would not approve this so I quit my job at the Bureau so that I could attend. At the end of the summer Alan hired me back with a big raise. Dantzig was and still is the only historically towering person I have known. -
Computing Algebraic Matroids
COMPUTING ALGEBRAIC MATROIDS ZVI ROSEN Abstract. An affine variety induces the structure of an algebraic matroid on the set of coordinates of the ambient space. The matroid has two natural decorations: a circuit poly- nomial attached to each circuit, and the degree of the projection map to each base, called the base degree. Decorated algebraic matroids can be computed via symbolic computation using Gr¨obnerbases, or through linear algebra in the space of differentials (with decora- tions calculated using numerical algebraic geometry). Both algorithms are developed here. Failure of the second algorithm occurs on a subvariety called the non-matroidal or NM- locus. Decorated algebraic matroids have widespread relevance anywhere that coordinates have combinatorial significance. Examples are computed from applied algebra, in algebraic statistics and chemical reaction network theory, as well as more theoretical examples from algebraic geometry and matroid theory. 1. Introduction Algebraic matroids have a surprisingly long history. They were studied as early as the 1930's by van der Waerden, in his textbook Moderne Algebra [27, Chapter VIII], and MacLane in one of his earliest papers on matroids [20]. The topic lay dormant until the 70's and 80's, when a number of papers about representability of matroids as algebraic ma- troids were published: notably by Ingleton and Main [12], Dress and Lovasz [7], the thesis of Piff [24], and extensively by Lindstr¨om([16{19], among others). In recent years, the al- gebraic matroids of toric varieties found application (e.g. in [22]); however, they have been primarily confined to that setting. Renewed interest in algebraic matroids comes from the field of matrix completion, starting with [14], where the set of entries of a low-rank matrix are the ground set of the algebraic matroid associated to the determinantal variety. -
Matroid Theory Release 9.4
Sage 9.4 Reference Manual: Matroid Theory Release 9.4 The Sage Development Team Aug 24, 2021 CONTENTS 1 Basics 1 2 Built-in families and individual matroids 77 3 Concrete implementations 97 4 Abstract matroid classes 149 5 Advanced functionality 161 6 Internals 173 7 Indices and Tables 197 Python Module Index 199 Index 201 i ii CHAPTER ONE BASICS 1.1 Matroid construction 1.1.1 Theory Matroids are combinatorial structures that capture the abstract properties of (linear/algebraic/...) dependence. For- mally, a matroid is a pair M = (E; I) of a finite set E, the groundset, and a collection of subsets I, the independent sets, subject to the following axioms: • I contains the empty set • If X is a set in I, then each subset of X is in I • If two subsets X, Y are in I, and jXj > jY j, then there exists x 2 X − Y such that Y + fxg is in I. See the Wikipedia article on matroids for more theory and examples. Matroids can be obtained from many types of mathematical structures, and Sage supports a number of them. There are two main entry points to Sage’s matroid functionality. The object matroids. contains a number of con- structors for well-known matroids. The function Matroid() allows you to define your own matroids from a variety of sources. We briefly introduce both below; follow the links for more comprehensive documentation. Each matroid object in Sage comes with a number of built-in operations. An overview can be found in the documen- tation of the abstract matroid class. -
Isotropical Linear Spaces and Valuated Delta-Matroids
Journal of Combinatorial Theory, Series A 119 (2012) 14–32 Contents lists available at ScienceDirect Journal of Combinatorial Theory, Series A www.elsevier.com/locate/jcta Isotropical linear spaces and valuated Delta-matroids Felipe Rincón University of California, Berkeley, Department of Mathematics, 1045 Evans Hall, Berkeley, CA, United States article info abstract Article history: The spinor variety is cut out by the quadratic Wick relations Received 3 June 2010 among the principal Pfaffians of an n × n skew-symmetric matrix. Availableonline27August2011 Its points correspond to n-dimensional isotropic subspaces of a 2n-dimensional vector space. In this paper we tropicalize this Keywords: picture, and we develop a combinatorial theory of tropical Wick Tropical linear space Isotropic subspace vectors and tropical linear spaces that are tropically isotropic. We Delta matroid characterize tropical Wick vectors in terms of subdivisions of - Coxeter matroid matroid polytopes, and we examine to what extent the Wick Valuated matroid relations form a tropical basis. Our theory generalizes several Spinor variety results for tropical linear spaces and valuated matroids to the class Wick relations of Coxeter matroids of type D. Matroid polytope © 2011 Elsevier Inc. All rights reserved. Tropical basis 1. Introduction Let n be a positive integer, and let V be a 2n-dimensional vector space over an algebraically closed field K of characteristic 0. Fix a basis e1, e2,...,en, e1∗ , e2∗ ,...,en∗ for V , and consider the symmetric bilinear form on V defined as n n Q (x, y) = xi yi∗ + xi∗ yi, i=1 i=1 for any two x, y ∈ V with coordinates x = (x1,...,xn, x1∗ ,...,xn∗ ) and y = (y1,...,yn, y1∗ ,...,yn∗ ). -
Arxiv:0905.4405V1 [Math.CO] 27 May 2009
Matroid Polytopes: Algorithms, Theory, and Applications By DAVID CARLISLE HAWS B.S. (University of California, Davis) 2004 DISSERTATION Submitted in partial satisfaction of the requirements for the degree of DOCTOR OF PHILOSOPHY in Mathematics in the OFFICE OF GRADUATE STUDIES of the UNIVERSITY OF CALIFORNIA DAVIS Approved: Jes´usA. De Loera (chair) Matthias K¨oppe arXiv:0905.4405v1 [math.CO] 27 May 2009 Eric Babson Committee in Charge 2009 -i- c David Carlisle Haws, 2009. All rights reserved. Contents Abstract iii Acknowledgments iv Chapter 1. What are Matroids and who are their polytopes?1 1.1. Matroids1 1.2. Matroid Polytopes & Polymatroids7 Chapter 2. Volume and Ehrhart Polynomial Computation 17 2.1. Computing the Ehrhart Polynomials 18 2.2. Preliminaries on Rational Generating Functions. 18 2.3. On the Tangent Cones of Matroid Polytopes 20 2.4. Polymatroids 30 2.5. The construction of a short multivariate rational generating function 32 2.6. Polynomial-time specialization of rational generating functions in varying dimension 35 Chapter 3. Results on the Algebraic Combinatorics of Matroid Polytopes 43 3.1. Algebraic Properties of h∗-vectors and Ehrhart polynomials of Matroid Polytopes 43 3.2. Unimodular Simplices of Matroid Polytopes 53 3.3. Two Dimensional Faces of Matroid Polytopes 64 Chapter 4. Applications to Optimization Through the Structure of Matroid Polytopes 67 4.1. Description of the Algorithms and Heuristics 67 4.2. Software Implementation 79 4.3. Computational Results 80 Bibliography 126 -ii- Matroid Polytopes: Algorithms, Theory and Applications. Abstract This dissertation presents new results on three different themes all related to matroid polytopes. -
Submodular Functions, Optimization, and Applications to Machine Learning — Spring Quarter, Lecture 6 —
Submodular Functions, Optimization, and Applications to Machine Learning — Spring Quarter, Lecture 6 — http://www.ee.washington.edu/people/faculty/bilmes/classes/ee563_spring_2018/ Prof. Jeff Bilmes University of Washington, Seattle Department of Electrical Engineering http://melodi.ee.washington.edu/~bilmes April 11th, 2018 f (A) + f (B) f (A B) + f (A B) Clockwise from top left:v Lásló Lovász Jack Edmonds ∪ ∩ Satoru Fujishige George Nemhauser ≥ Laurence Wolsey = f (A ) + 2f (C) + f (B ) = f (A ) +f (C) + f (B ) = f (A B) András Frank r r r r Lloyd Shapley ∩ H. Narayanan Robert Bixby William Cunningham William Tutte Richard Rado Alexander Schrijver Garrett Birkho Hassler Whitney Richard Dedekind Prof. Jeff Bilmes EE563/Spring 2018/Submodularity - Lecture 6 - April 11th, 2018 F1/46 (pg.1/163) Logistics Review Cumulative Outstanding Reading Read chapter 1 from Fujishige’s book. Read chapter 2 from Fujishige’s book. Prof. Jeff Bilmes EE563/Spring 2018/Submodularity - Lecture 6 - April 11th, 2018 F2/46 (pg.2/163) Logistics Review Announcements, Assignments, and Reminders If you have any questions about anything, please ask then via our discussion board (https://canvas.uw.edu/courses/1216339/discussion_topics). Prof. Jeff Bilmes EE563/Spring 2018/Submodularity - Lecture 6 - April 11th, 2018 F3/46 (pg.3/163) Logistics Review Class Road Map - EE563 L1(3/26): Motivation, Applications, & L11(4/30): Basic Definitions, L12(5/2): L2(3/28): Machine Learning Apps L13(5/7): (diversity, complexity, parameter, learning L14(5/9): target, surrogate). L15(5/14): L3(4/2): Info theory exs, more apps, L16(5/16): definitions, graph/combinatorial examples L17(5/21): L4(4/4): Graph and Combinatorial Examples, Matrix Rank, Examples and L18(5/23): Properties, visualizations L–(5/28): Memorial Day (holiday) L5(4/9): More Examples/Properties/ L19(5/30): Other Submodular Defs., Independence, L21(6/4): Final Presentations L6(4/11): Matroids, Matroid Examples, maximization.