ICES Identification Leaflets for Plankton
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Zootaxa,Crustacean Classification
Zootaxa 1668: 313–325 (2007) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2007 · Magnolia Press ISSN 1175-5334 (online edition) Crustacean classification: on-going controversies and unresolved problems* GEOFF A. BOXSHALL Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom E-mail: [email protected] *In: Zhang, Z.-Q. & Shear, W.A. (Eds) (2007) Linnaeus Tercentenary: Progress in Invertebrate Taxonomy. Zootaxa, 1668, 1–766. Table of contents Abstract . 313 Introduction . 313 Treatment of parasitic Crustacea . 315 Affinities of the Remipedia . 316 Validity of the Entomostraca . 318 Exopodites and epipodites . 319 Using of larval characters in estimating phylogenetic relationships . 320 Fossils and the crustacean stem lineage . 321 Acknowledgements . 322 References . 322 Abstract The journey from Linnaeus’s original treatment to modern crustacean systematics is briefly characterised. Progress in our understanding of phylogenetic relationships within the Crustacea is linked to continuing discoveries of new taxa, to advances in theory and to improvements in methodology. Six themes are discussed that serve to illustrate some of the major on-going controversies and unresolved problems in the field as well as to illustrate changes that have taken place since the time of Linnaeus. These themes are: 1. the treatment of parasitic Crustacea, 2. the affinities of the Remipedia, 3. the validity of the Entomostraca, 4. exopodites and epipodites, 5. using larval characters in estimating phylogenetic rela- tionships, and 6. fossils and the crustacean stem-lineage. It is concluded that the development of the stem lineage concept for the Crustacea has been dominated by consideration of taxa known only from larval or immature stages. -
The Plankton Lifeform Extraction Tool: a Digital Tool to Increase The
Discussions https://doi.org/10.5194/essd-2021-171 Earth System Preprint. Discussion started: 21 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data The Plankton Lifeform Extraction Tool: A digital tool to increase the discoverability and usability of plankton time-series data Clare Ostle1*, Kevin Paxman1, Carolyn A. Graves2, Mathew Arnold1, Felipe Artigas3, Angus Atkinson4, Anaïs Aubert5, Malcolm Baptie6, Beth Bear7, Jacob Bedford8, Michael Best9, Eileen 5 Bresnan10, Rachel Brittain1, Derek Broughton1, Alexandre Budria5,11, Kathryn Cook12, Michelle Devlin7, George Graham1, Nick Halliday1, Pierre Hélaouët1, Marie Johansen13, David G. Johns1, Dan Lear1, Margarita Machairopoulou10, April McKinney14, Adam Mellor14, Alex Milligan7, Sophie Pitois7, Isabelle Rombouts5, Cordula Scherer15, Paul Tett16, Claire Widdicombe4, and Abigail McQuatters-Gollop8 1 10 The Marine Biological Association (MBA), The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. 2 Centre for Environment Fisheries and Aquacu∑lture Science (Cefas), Weymouth, UK. 3 Université du Littoral Côte d’Opale, Université de Lille, CNRS UMR 8187 LOG, Laboratoire d’Océanologie et de Géosciences, Wimereux, France. 4 Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. 5 15 Muséum National d’Histoire Naturelle (MNHN), CRESCO, 38 UMS Patrinat, Dinard, France. 6 Scottish Environment Protection Agency, Angus Smith Building, Maxim 6, Parklands Avenue, Eurocentral, Holytown, North Lanarkshire ML1 4WQ, UK. 7 Centre for Environment Fisheries and Aquaculture Science (Cefas), Lowestoft, UK. 8 Marine Conservation Research Group, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK. 9 20 The Environment Agency, Kingfisher House, Goldhay Way, Peterborough, PE4 6HL, UK. 10 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, AB11 9DB, UK. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
From Sea to Sea: Canada's Three Oceans of Biodiversity
Review From Sea to Sea: Canada’s Three Oceans of Biodiversity Philippe Archambault1*, Paul V. R. Snelgrove2, Jonathan A. D. Fisher3, Jean-Marc Gagnon4, David J. Garbary5, Michel Harvey6, Ellen L. Kenchington7,Ve´ronique Lesage6,Me´lanie Levesque1, Connie Lovejoy8, David L. Mackas9, Christopher W. McKindsey6, John R. Nelson9, Pierre Pepin10, Laurence Piche´ 1, Michel Poulin4 1 Institut des sciences de la mer de Rimouski, Universite´ du Que´bec a` Rimouski, Rimouski, Province de Quebec, Canada, 2 Ocean Sciences Centre/Biology Department, Memorial University of Newfoundland, St. John’s, Newfoundland, Canada, 3 Department of Biology, Queen’s University, Kingston, Ontario, Canada, 4 Research Division, Canadian Museum of Nature, Ottawa, Ontario, Canada, 5 Department of Biology, St. Francis Xavier University, Antigonish, Nova Scotia, Canada, 6 Fisheries and Oceans Canada, Maurice Lamontagne Institute, Mont Joli, Quebec, Canada, 7 Fisheries and Oceans Canada, Bedford Institute of Oceanography, Dartmouth, Nova Scotia, Canada, 8 De´partement de Biologie, Que´bec-Oce´an and Institut de biologie inte´grative et des syste´mes (IBIS), Universite´ Laval, Que´bec, Canada, 9 Fisheries and Oceans Canada, Institute of Ocean Sciences, Sidney, British Columbia, Canada, 10 Northwest Atlantic Fisheries Centre, St John’s, Newfoundland, Canada Evaluating and understanding biodiversity in marine ecosystems are positive or negative [1,2,3] as judged by trends in the number are both necessary and challenging for conservation. This paper of species and by potential future impacts. compiles and summarizes current knowledge of the diversity of Canada is at a major crossroads in its commitment to the marine taxa in Canada’s three oceans while recognizing that this conservation of living marine resources. -
Onetouch 4.0 Scanned Documents
29 December 2000 PROCEEDINGS OF THE BIOLOGICAL SOCIETY OF WASHINGTON 113(4):1079-1088. 2000. Grievella shanki, a new genus and species of scolecitrichid calanoid copepod (Crustacea) from a hydrothermal vent along the southern East Pacific Rise Frank D. Ferrari and E. L. Markhaseva (FDF) Department of Invertebrate Zoology (MRC 534), National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A; (ELM) Russian Academy of Sciences, Zoological Institute, Universitetskaya nab. I, 199034, St. Petersburg, Russia Abstract.—Four derived states separate the calanoid copepod Grievella shan- ki, new genus and species, from other scolecitrichids: small integumental bumps on the genital complex; an ear-like extension on articulating segment 22 of antenna 1; two lateral setae on the distal exopodal segment of swimming leg 2; a denticle-like attenuation of the proximal praecoxal lobe of maxilla 2. The first probably is an autapomorphy for the species; the second, third and fourth are presumed synapomorphies for species of the new genus. The last derived state is convergent with some species of the calanoid superfamilies Epacteriscoidea, Centropagoidea and Megacalanoidea, but it is a synapomorphy within the Clausocalanoidea to which Grievella shanki belongs. Five setae on the proximal praecoxal lobe of maxilla 2 and three setae on the distal praecoxal lobe of the maxilliped separate Grievella shanki from species of Diaixidae, Parkiidae and Tharybidae, and species of Phaennidae, respectively. The states of these characters for Grievella shanki may be plesiomorphic to the states expressed in Diaixidae, Parkiidae, Tharybidae and Phaennidae so assignment of this species to the Scolecitrichidae is tentative. The number and kind of sensory setae on the distal basal lobe plus exopod of maxilla 2 alone are not adequate to diagnose the Scolecitrichidae, or to separate all of its species from those of the other families with these sensory setae. -
Trabajo De Grado Para Optar Al Título De Biólogo Marino
ESTRUCTURA DEL ZOOPLANCTON Y SU RELACIÓN CON LAS CONDICIONES MARINAS EN EL CARIBE NORTE COLOMBIANO LEIDY JOHANNA HERNÁNDEZ RIVERA Tesis de maestría para optar al título de Magíster en Ciencias Marinas Director ADOLFO SANJUAN MUÑOZ Profesor Asociado Biólogo Marino Magíster en Gestión Ambiental en Zonas Costeras Máster en Biodiversidad Animal Codirector ANDRÉS FRANCO HERRERA Director Departamento de Ciencias Biológicas y Ambientales Biólogo Marino Doctor en Oceanografía PROGRAMA DE MAESTRÍA EN CIENCIAS MARINAS DEPARTAMENTO DE CIENCIAS BIOLÓGICAS Y AMBIENTALES FACULTAD DE CIENCIAS NATURALES E INGENIERÍA UNIVERSIDAD DE BOGOTÁ JORGE TADEO LOZANO SANTA MARTA 2019 ESTRUCTURA DEL ZOOPLANCTON Y SU RELACIÓN CON LAS CONDICIONES MARINAS EN EL CARIBE NORTE COLOMBIANO Hernández Rivera, L. Programa de Maestría en Ciencias Marinas. Departamento de ciencias biológicas y ambientales. facultad de Ciencias Naturales e Ingeniería. Universidad de Bogotá Jorge Tadeo Lozano. RESUMEN Con el objetivo de determinar la estructura en términos de abundancia, biomasa, composición y diversidad del ensamblaje zooplanctónico en la costa del Caribe norte colombiano y relacionarla con las condiciones del agua, se llevaron a cabo dos cruceros de investigación en las dos épocas climáticas típicas de la región (seca y lluviosa). Las estaciones fueron ubicadas en dos de las provincias fisicoquímicas determinadas en el Caribe colombiano; grupo 2: río Magdalena-CGSM (región 1) y grupo 6: PNN Tayrona-Guajira (región 2). Estos se realizaron sobre una grilla de 16 estaciones, donde se efectuaron arrastres circulares superficiales. Se encontraron 87 familias-morfotipos encontrándose la mayor riqueza de familias en la región 1 en la época seca, mientras que las mayores contribuciones en abundancias y biomasas se obtuvieron en época lluviosa en la región PNN Tayrona-Guajira. -
Scientific Articles
Scientific articles Abed-Navandi, D., Dworschak, P.C. 2005. Food sources of tropical thalassinidean shrimps: a stable isotope study. Marine Ecology Progress Series 201: 159-168. Abed-Navandi, D., Koller,H., Dworschak, P.C. 2005. Nutritional ecology of thalassinidean shrimps constructing burrows with debris chambers: The distribution and use of macronutrients and micronutrients. Marine Biology Research 1: 202- 215. Acero, A.P.1985. Zoogeographical implications of the distribution of selected families of Caribbean coral reef fishes.Proc. of the Fifth International Coral Reef Congress, Tahiti, Vol. 5. Acero, A.P.1987. The chaenopsine blennies of the southwestern Caribbean (Pisces, Clinidae, Chaenopsinae). III. The genera Chaenopsis and Coralliozetus. Bol. Ecotrop. 16: 1-21. Acosta, C.A. 2001. Assessment of the functional effects of a harvest refuge on spiny lobster and queen conch popuplations at Glover’s Reef, Belize. Proceedings of Gulf and Caribbean Fishisheries Institute. 52 :212-221. Acosta, C.A. 2006. Impending trade suspensions of Caribbean queen conch under CITES: A case study on fishery impact and potential for stock recovery. Fisheries 31(12): 601-606. Acosta, C.A., Robertson, D.N. 2003. Comparative spatial geology of fished spiny lobster Panulirus argus and an unfished congener P. guttatus in an isolated marine reserve at Glover’s Reef atoll, Belize. Coral Reefs 22: 1-9. Allen, G.R., Steene, R., Allen, M. 1998. A guide to angelfishes and butterflyfishes.Odyssey Publishing/Tropical Reef Research. 250 p. Allen, G.R.1985. Butterfly and angelfishes of the world, volume 2.Mergus Publishers, Melle, Germany. Allen, G.R.1985. FAO Species Catalogue. Vol. 6. -
Hybridization in Selected Species and Genera of Diaptomid Copepods in China
water Article Hybridization in Selected Species and Genera of Diaptomid Copepods in China Hui-Ming Li 1,2, Ping Liu 1, Xiao-Li Zhang 1, Henri J. Dumont 1,3 and Bo-Ping Han 1,* 1 Institute of Hydrobiology, Jinan University, Guangzhou 510632, China; [email protected] (H.-M.L.); [email protected] (P.L.); [email protected] (X.-L.Z.); [email protected] (H.J.D.) 2 College of Animal Science and Technology, Guangdong Polytechnic of Science and Trade, International School Alliance of China, Guangzhou 510430, China 3 Department of Biology, Ghent University, B-9000 Ghent, Belgium * Correspondence: [email protected]; Tel.: +86-020-38374600 Abstract: To better understand the fauna of freshwater calanoid copepods of China, including the occurrence of intra- and intergeneric hybridization, we studied five species, distributed across the whole of China or in South China. We sequenced a mitochondrial (COI) and the nuclear ribosome 18S operon (ITS) to reconstruct the phylogenetic trees by using a Bayesian and maximum likelihood (ML) approach with 161 individuals. The phylogeny tree revealed five clades and two geographically separated subclades in both S. ferus and P. tunguidus. We found, for the first time, that the hybrid specimens occurred in Diaptomidae, but low hybridization suggested effective barriers to hybridization and introgression. One hypothesis, that hybridization is recent and was initiated by invasions via canals built between the Yangtze and Pearl rivers c. 2000 years ago, is not supported by K2P genetic distances of the order of 20%. Furthermore, COI analysis of different populations of S. ferus and P. tunguidus revealed two geographical clades in each species, with genetic distances commensurate with cryptic speciation. -
(Gulf Watch Alaska) Final Report the Seward Line: Marine Ecosystem
Exxon Valdez Oil Spill Long-Term Monitoring Program (Gulf Watch Alaska) Final Report The Seward Line: Marine Ecosystem monitoring in the Northern Gulf of Alaska Exxon Valdez Oil Spill Trustee Council Project 16120114-J Final Report Russell R Hopcroft Seth Danielson Institute of Marine Science University of Alaska Fairbanks 905 N. Koyukuk Dr. Fairbanks, AK 99775-7220 Suzanne Strom Shannon Point Marine Center Western Washington University 1900 Shannon Point Road, Anacortes, WA 98221 Kathy Kuletz U.S. Fish and Wildlife Service 1011 East Tudor Road Anchorage, AK 99503 July 2018 The Exxon Valdez Oil Spill Trustee Council administers all programs and activities free from discrimination based on race, color, national origin, age, sex, religion, marital status, pregnancy, parenthood, or disability. The Council administers all programs and activities in compliance with Title VI of the Civil Rights Act of 1964, Section 504 of the Rehabilitation Act of 1973, Title II of the Americans with Disabilities Action of 1990, the Age Discrimination Act of 1975, and Title IX of the Education Amendments of 1972. If you believe you have been discriminated against in any program, activity, or facility, or if you desire further information, please write to: EVOS Trustee Council, 4230 University Dr., Ste. 220, Anchorage, Alaska 99508-4650, or [email protected], or O.E.O., U.S. Department of the Interior, Washington, D.C. 20240. Exxon Valdez Oil Spill Long-Term Monitoring Program (Gulf Watch Alaska) Final Report The Seward Line: Marine Ecosystem monitoring in the Northern Gulf of Alaska Exxon Valdez Oil Spill Trustee Council Project 16120114-J Final Report Russell R Hopcroft Seth L. -
The Distribution of Calanoid Copepods Off
THOMAS E. BOWM The Distribution of Calanoid Copepods off r the Southeastern W United States Between Cape Hatteras and j Southern Florida SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY NUMBER 96 SERIAL PUBLICATIONS OF THE SMITHSONIAN INSTITUTION The emphasis upon publications as a means of diffusing knowledge was expressed by the first Secretary of the Smithsonian Institution. In his formal plan for the Insti- tution, Joseph Henry articulated a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This keynote of basic research has been adhered to over the years in the issuance of thousands of titles in serial publications under the Smithsonian imprint, com- mencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Annals of Flight Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology Smithsonian Studies in History and Technology In these series, the Institution publishes original articles and monographs dealing with the research and collections of its several museums and offices and of profes- sional colleagues at other institutions of learning. These papers report newly acquired facts, synoptic interpretations of data, or original theory in specialized fields. These publications are distributed by subscription to libraries, laboratories, and other in- terested institutions and specialists throughout the world. Individual copies may be obtained from the Smithsonian Institution Press as long as stocks are available. -
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources http://www.dnr.sc.gov/marine/sertc/ Southeastern Regional Taxonomic Center Invertebrate Literature Library (updated 9 May 2012, 4056 entries) (1958-1959). Proceedings of the salt marsh conference held at the Marine Institute of the University of Georgia, Apollo Island, Georgia March 25-28, 1958. Salt Marsh Conference, The Marine Institute, University of Georgia, Sapelo Island, Georgia, Marine Institute of the University of Georgia. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Caprellidea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Gammaridea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1981). Stomatopods. FAO species identification sheets for fishery purposes. Eastern Central Atlantic; fishing areas 34,47 (in part).Canada Funds-in Trust. Ottawa, Department of Fisheries and Oceans Canada, by arrangement with the Food and Agriculture Organization of the United Nations, vols. 1-7. W. Fischer, G. Bianchi and W. B. Scott. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume II. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume III. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. -
Mitochondrial and Nuclear Rrna Based Copepod Phylogeny with Emphasis on the Euchaetidae (Calanoida)
Marine Biology (1999) 133: 79±90 Ó Springer-Verlag 1999 E. Braga á R. Zardoya á A. Meyer á J. Yen Mitochondrial and nuclear rRNA based copepod phylogeny with emphasis on the Euchaetidae (Calanoida) Received: 9 October 1997 / Accepted: 5 August 1998 Abstract Phylogenetic relationships within the copepod copepod, and that a bathypelagic, vertically migrating family Euchaetidae and between representatives of three lifestyle characteristic of Paraeuchaeta is an ancestral copepod orders (Calanoida, Harpacticoida, and Poeci- trait of the family Euchaetidae which was lost apomor- lostomatoida) were investigated using partial nucleotide phically by Euchaeta. The application of a molecular sequences of the mitochondrial 16S rRNA and the nu- clock suggests that the sibling species Euchaeta rimana clear 28S rRNA genes. DNA isolation, polymerase Bradford and Euchaeta marina (Prestandrea) diverged chain reaction, cloning, and DNA sequencing tech- due to the emergence of the Panamanian land bridge. niques were customized for these crustaceans. Our re- sults support the monophyly of each copepod order, but in contrast to traditional morphology-based phylogenies of copepod orders, the Poecilostomatoida are basal to Introduction the Calanoida and Harpacticoida on our DNA-based phylogenetic tree. Phylogenetic trees generated by Ambiguous morphological relationships and a poor maximum parsimony, neighbor-joining, and maximum- fossil record have so far hindered progress in copepod likelihood analyses support the classi®cation of the systematics (e.g. Bradford 1973; Fontaine 1988; Huys genera Euchaeta and Paraeuchaeta in the family and Boxshall 1991; Bucklin et al. 1992, 1995). DNA Euchaetidae; results, however, suggest that Euchaeta sequence data provide complementary and informative acuta Giesbrecht is more closely related to species of the phylogenetic data for determining evolutionary rela- genus Paraeuchaeta than to those of Euchaeta, although tionships among morphologically similar species (e.g.