Current Insights Into the Mechanisms and Management of Infection Stones
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Precipitation of Phosphate Minerals from Effluent of Anaerobically Digested Swine Manure Alex Y
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School January 2012 Precipitation of Phosphate Minerals from Effluent of Anaerobically Digested Swine Manure Alex Y. Lin University of South Florida, [email protected] Follow this and additional works at: http://scholarcommons.usf.edu/etd Part of the Chemical Engineering Commons, Environmental Engineering Commons, and the Environmental Sciences Commons Scholar Commons Citation Lin, Alex Y., "Precipitation of Phosphate Minerals from Effluent of Anaerobically Digested Swine Manure" (2012). Graduate Theses and Dissertations. http://scholarcommons.usf.edu/etd/4359 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Precipitation of Phosphate Minerals from Effluent of Anaerobically Digested Swine Manure by Alex Yuan-li Lin A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Department of Civil and Environmental Engineering College of Engineering University of South Florida Co-Major Professor: Sarina Ergas, Ph.D. Co-Major Professor: Jeffrey Cunningham, Ph.D. Maya Trotz, Ph.D. Date of Approval: November 9, 2012 Keywords: struvite, wastewater, confined animal feeding operation (CAFO), fertilizer, synthetic Copyright © 2012, Alex Yuan-li Lin DEDICATION I dedicate this thesis to all those that have supported me along the way whether directly or indirectly. I would like to thank members of Intervarsity on the USF campus, members of Community Life Church, and my family for their support and encouragement in many ways. -
DESCRIPTIVE HUMAN PATHOLOGICAL MINERALOGY 1179 but Still Occursregularly
Amerkan Mincraloght, Volume 59, pages I177-1182, 1974 DescriptiveHuman Pathological Mineralogy Rrcneno I. Gmsox P.O. Box I O79, Dauis,C alilornia 95 6 I 6 Absfract Crystallographic, petrographic, and X-ray powder difiraction analysis of approximately 15,000 samples showed that the most common mineral constituents of human pathological concretions are calcium oxalates (whewellite and weddellite), calcium phosphates (apatite, brushite, and whitlockite), and magnesium phosphates (struvite and newberyite). Less are monetite, hannayite, calcite, aragonite, vaterite, halite, gypsum, and hexahydrite."o-rnon of the variables determining which minerals precipitate, the effects of different pH values on deposi- tional conditions are most apparent, and are shown by occurrences and relationships among many of the minerals studied. A pH-sensitive series has been identified among magnesium phosphatesin concretions. Introduction The study was carried out over a period of three The importanceof mineralogyin the field of medi- years.Composition was confirmedby X-ray powder cine lies in the applicationof mineralogicalmethods diffraction and polarizing microscopy;sequence was to study pathologicalmineral depositsin the human arrived at from considerationsof microscopic tex- body. Urology benefitsgreatly becauseconcretions tural and crystallographicrelationships. More than of mineral matter (calculi) are common in the 14,500samples were derivedfrom the urinary sys- urinary system.The value of mineralogicalanalysis tem of kidneys,ureters, bladder, and urethra; the of urinary material was first describedby prien and remaining samples are not statistically significant Frondel (1947). Mineralogistsmay be unawareof and arediscussed only briefly. the variability and nature of such compounds be- Calcium cause reports are usually published in medical Oxalates journals. This investigationreports the mineralogy Whewellite, CaCzOE.H2O,and weddellite, CaCz- and possiblepathological significanceof these min- O4'2H2O,are very uncommonin the mineralworld. -
Changes in the Bacterial Diversity of Human Milk During Late Lactation Period (Weeks 21 to 48)
foods Communication Changes in the Bacterial Diversity of Human Milk during Late Lactation Period (Weeks 21 to 48) Wendy Marin-Gómez ,Ma José Grande, Rubén Pérez-Pulido, Antonio Galvez * and Rosario Lucas Microbiology Division, Department of Health Sciences, Faculty of Experimental Sciences, University of Jaén, 23071 Jaén, Spain; [email protected] (W.M.-G.); [email protected] (M.J.G.); [email protected] (R.P.-P.); [email protected] (R.L.) * Correspondence: [email protected]; Tel.: +34-953-212160 Received: 19 July 2020; Accepted: 25 August 2020; Published: 27 August 2020 Abstract: Breast milk from a single mother was collected during a 28-week lactation period. Bacterial diversity was studied by amplicon sequencing analysis of the V3-V4 variable region of the 16S rRNA gene. Firmicutes and Proteobacteria were the main phyla detected in the milk samples, followed by Actinobacteria and Bacteroidetes. The proportion of Firmicutes to Proteobacteria changed considerably depending on the sampling week. A total of 411 genera or higher taxons were detected in the set of samples. Genus Streptococcus was detected during the 28-week sampling period, at relative abundances between 2.0% and 68.8%, and it was the most abundant group in 14 of the samples. Carnobacterium and Lactobacillus had low relative abundances. At the genus level, bacterial diversity changed considerably at certain weeks within the studied period. The weeks or periods with lowest relative abundance of Streptococcus had more diverse bacterial compositions including genera belonging to Proteobacteria that were poorly represented in the rest of the samples. Keywords: breast milk; biodiversity; lactic acid bacteria; late lactation; metagenomics 1. -
Volatiles from Serratia Marcescens, S. Proteamaculans, and Bacillus
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.07.286443; this version posted September 7, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. RESEARCH ARTICLE 1 Volatiles from Serratia marcescens, S. 2 proteamaculans, and Bacillus subtilis 3 Inhibit Growth of Rhizopus stolonifer and 4 Other Fungi 5 Derreck Carter-House1, Joshua Chung1, Skylar McDonald1, Kerry Mauck2, Jason 6 E Stajich1,* 7 University of California-Riverside, Department of Microbiology and Plant Pathology, Riverside, CA, USA1; University 8 of California-Riverside, Department of Entomology, Riverside, CA, USA2 Compiled September 7, 2020 This is a draft manuscript, pre-submission 9 abstract The common soil bacteria Serratia marcescens, Serratia proteamaculans, Address correspondence to Jason Stajich, ja- [email protected]. 10 and Bacillus subtilis produce small molecular weight volatile compounds that are fungi- 11 static against multiple species, including the zygomycete mold Rhizopus stolonifer (Mu- 12 coromycota) and the model filamentous mold Neurospora crassa (Ascomycota). The 13 compounds or the bacteria can be exploited in development of biological controls to 14 prevent establishment of fungi on food and surfaces. Here, we quantified and identi- 15 fied bacteria-produced volatiles using headspace sampling and gas chromatography- 16 mass spectrometry. We found that each bacterial species in culture has a unique 17 volatile profile consisting of dozens of compounds. Using multivariate statistical ap- 18 proaches, we identified compounds in common or unique to each species. Our anal- 19 ysis suggested that three compounds, dimethyl trisulfide, anisole, and 2-undecanone, 20 are characteristic of the volatiles emitted by these antagonistic bacteria. -
1 Raman Spectroscopy of Newberyite, Hannayite and Struvite. Ray L. Frost
Raman spectroscopy of newberyite, hannayite and struvite. Ray L. Frost• a, Matt L. Weier a, Wayde N. Martens, a Dermot A. Henry b, and Stuart J. Mills b,c a Inorganic Materials Research Program, School of Physical and Chemical Sciences, Queensland University of Technology, GPO Box 2434, Brisbane Queensland 4001, Australia. b Geosciences, Museum Victoria, PO Box 666E, Melbourne, Victoria 3001, Australia. c CSIRO Minerals, Box 312, Clayton South, Victoria 3169, Australia. This is the authors’ version of a paper that was later published as: Frost, Ray, Weier, Matt , Martens, Wayde, Henry, Dermot & Mills, Stuart (2005) Raman spectroscopy of newberyite, hannayite and struvite. Spectrochimica Acta 62(1):pp. 181-188. Copyright 2005 Elsevier Abstract The phosphate minerals hannayite, newberyite and struvite have been studied by Raman spectroscopy using a thermal stage. Hannayite and newberyite are -1 characterised by an intense band at around 980 cm assigned to the ν1 symmetric stretching vibration of the HPO4 units. In contrast the symmetric stretching mode is -1 observed at 942 cm for struvite. The Raman spectra are characterised by multiple ν3 antisymmetric stretching bands and ν2 and ν4 bending modes indicating strong distortion of the HPO4 and PO4 units. Hannayite and newberyite are defined by bands -1 at 3382 and 3350 cm attributed to HOPO3 vibrations and hannayite and struvite by + bands at 2990, 2973 and 2874 assigned to NH4 bands. Raman spectroscopy has proven most useful for the analysis of these ‘cave’ minerals where complex paragenetic relationships exist between the minerals. Keywords: hannayite, newberryite, struvite, phosphate, Raman spectroscopy Introduction Interest in struvite formation also comes from the formation in urinary tracts and kidneys [1-6]. -
Bladder Stones in Dogs & Cats By: Dr
Navarro Small Animal Clinic 5009 Country Club Dr. Victoria, TX 77904 361-573-2491 www.navarrosmallanimalclinic.com Bladder Stones in Dogs & Cats By: Dr. Shana Bohac Dogs, like people, can develop a variety of bladder stones. These stones are rock-like structures that are formed by minerals. Some stones form in alkaline urine, whereas others form when the urine is more acidic. Bladder stones are very common in dogs, particularly small breed dogs. The most common signs that a dog or cat has bladder stones include blood in the urine, and straining to urinate. Blood is seen due to the stones bouncing around and hitting the bladder wall. This can irritate and damage the tissue and can cause cystitis (inflammation of the bladder). Straining to urinate occurs because of the inflammation and irritation of the bladder walls or urethra or muscle spasms. The stone itself can actually obstruct the flow of urine if it blocks the urethra. Small stones can get stuck in the urethra and cause a complete obstruction. This can be life threatening if the obstruction is not relieved since the bladder can rupture as more urine is produced with nowhere to go. Bladder stones form because of changes in the urine pH. Normal dog urine is slightly acidic and contains waste products such as dissolved minerals and enzymes such as urease. Urease breaks down excess ammonia in urine. An overload of ammonia in urine can cause bladder inflammation and thickening known as cystitis. There are a variety of stones that can form in the bladder, some that form in acidic urine, while others form in alkaline urine. -
Characterization of Serratia Isolates from Soil, Ecological Implications and Transfer of Serratia Proteamaculans Subsp
International Journal of Systematic and Evolutionary Microbiology (2002), 52, 2281–2289 DOI: 10.1099/ijs.0.02263-0 Characterization of Serratia isolates from soil, ecological implications and transfer of Serratia proteamaculans subsp. quinovora Grimont et al. 1983 to Serratia quinivorans corrig., sp. nov. 1 Cardiff School of Kevin E. Ashelford,1 John C. Fry,1 Mark J. Bailey2 and Martin J. Day1 Biosciences, Cardiff University, PO Box 915, Cardiff CF10 3TL, UK Author for correspondence: John C. Fry. Tel: j44 29 2087 4190. Fax: j44 29 2087 4305. 2 Centre for Ecology and e-mail: fry!cardiff.ac.uk Hydrology – Oxford, Mansfield Road, Oxford OX1 3SR, UK Eleven strains of Serratia were isolated from different soils and the guts of invertebrates and characterized by their sensitivity to eight indigenous bacteriophages. They were also classified according to bacteriocin production and sensitivity, BiOLOG plate and API 20E strip profiles and 16S rRNA sequence information. One strain was thus identified as Serratia plymuthica, another as Serratia fonticola. The remaining strains were shown to be closely related to Serratia proteamaculans subsp. quinovora Grimont et al. 1983 after DNA–DNA cross-hybridization demonstrated relatedness greater than 70% with the type strain of this subspecies. From an ecological perspective, our results illustrated the wide variation in sensitivity that closely related Serratia strains have towards various indigenous soil phages and that these phages have broad host ranges within the genus. Furthermore, the phage and bacteriocin interactions within the Serratia strains examined were intricate and did not reflect phylogenetic relationships. These results together imply that complex interactions will occur in soil within the natural community of Serratia strains and their bacteriophages. -
Struvite Urolithiasis in Dogs
Glendale Animal Hospital 623-934-7243 www.familyvet.com Struvite Urolithiasis in Dogs (Struvite Stones in the Urinary Tract of Dogs) Basics OVERVIEW • ”Urolithiasis” is the medical term for the presence of stones (known as “uroliths”) in the urinary tract • The most common minerals found in the stones (uroliths) are used to name the particular stone; in this type of stone, struvite makes up the composition of the stone, and thus the name “struvite urolithiasis”; struvite is magnesium ammonium phosphate • The urinary tract consists of the kidneys, the ureters (the tubes running from the kidneys to the bladder), the urinary bladder (that collects urine and stores it until the pet urinates), and the urethra (the tube from the bladder to the outside, through which urine flows out of the body) • Struvite urolithiasis is the formation of crystalline stones (uroliths) composed of magnesium ammonium phosphate, or struvite, in the urinary tract GENETICS • The high incidence of struvite stones (uroliths) in some breeds of dogs (such as the miniature schnauzer) suggests a familial (runs in certain families or lines of animals) tendency; it is hypothesized that susceptible miniature schnauzers inherit some abnormality of local host defenses of the urinary tract that increases their likelihood to develop urinary tract infection (UTI) • Sterile struvite uroliths were found in a family of English cocker spaniels SIGNALMENT/DESCRIPTION OF PET Species • Dogs Breed Predilections • Miniature schnauzer, shih tzu, bichon frise, miniature poodle, cocker spaniel, -
Optical Properties of Common Rock-Forming Minerals
AppendixA __________ Optical Properties of Common Rock-Forming Minerals 325 Optical Properties of Common Rock-Forming Minerals J. B. Lyons, S. A. Morse, and R. E. Stoiber Distinguishing Characteristics Chemical XI. System and Indices Birefringence "Characteristically parallel, but Mineral Composition Best Cleavage Sign,2V and Relief and Color see Fig. 13-3. A. High Positive Relief Zircon ZrSiO. Tet. (+) 111=1.940 High biref. Small euhedral grains show (.055) parallel" extinction; may cause pleochroic haloes if enclosed in other minerals Sphene CaTiSiOs Mon. (110) (+) 30-50 13=1.895 High biref. Wedge-shaped grains; may (Titanite) to 1.935 (0.108-.135) show (110) cleavage or (100) Often or (221) parting; ZI\c=51 0; brownish in very high relief; r>v extreme. color CtJI\) 0) Gamet AsB2(SiO.la where Iso. High Grandite often Very pale pink commonest A = R2+ and B = RS + 1.7-1.9 weakly color; inclusions common. birefracting. Indices vary widely with composition. Crystals often euhedraL Uvarovite green, very rare. Staurolite H2FeAI.Si2O'2 Orth. (010) (+) 2V = 87 13=1.750 Low biref. Pleochroic colorless to golden (approximately) (.012) yellow; one good cleavage; twins cruciform or oblique; metamorphic. Olivine Series Mg2SiO. Orth. (+) 2V=85 13=1.651 High biref. Colorless (Fo) to yellow or pale to to (.035) brown (Fa); high relief. Fe2SiO. Orth. (-) 2V=47 13=1.865 High biref. Shagreen (mottled) surface; (.051) often cracked and altered to %II - serpentine. Poor (010) and (100) cleavages. Extinction par- ~ ~ alleL" l~4~ Tourmaline Na(Mg,Fe,Mn,Li,Alk Hex. (-) 111=1.636 Mod. biref. -
A Genome-Scale Antibiotic Screen in Serratia Marcescens Identifies Ydgh As a Conserved Modifier of Cephalosporin and Detergent S
bioRxiv preprint doi: https://doi.org/10.1101/2021.04.16.440252; this version posted April 17, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 A genome-scale antibiotic screen in Serratia marcescens identifies YdgH as a conserved 2 modifier of cephalosporin and detergent susceptibility 3 Jacob E. Lazarus1,2,3,#, Alyson R. Warr2,3, Kathleen A. Westervelt2,3, David C. Hooper1,2, Matthew 4 K. Waldor2,3,4 5 1 Department of Medicine, Division of Infectious Diseases, Massachusetts General Hospital, Harvard 6 Medical School, Boston, MA, USA 7 2 Department of Microbiology, Harvard Medical School, Boston, MA, USA 8 3 Department of Medicine, Division of Infectious Diseases, Brigham and Women’s Hospital, Harvard 9 Medical School, Boston, MA, USA 10 4 Howard Hughes Medical Institute, Boston, MA, USA 11 * Correspondence to [email protected] 12 13 Running Title: Antibiotic whole-genome screen in Serratia marcescens 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.04.16.440252; this version posted April 17, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 14 Abstract: 15 Serratia marcescens, a member of the order Enterobacterales, is adept at colonizing healthcare 16 environments and an important cause of invasive infections. Antibiotic resistance is a daunting 17 problem in S. marcescens because in addition to plasmid-mediated mechanisms, most isolates 18 have considerable intrinsic resistance to multiple antibiotic classes. -
Prodigiosin of Serratia Marcescens ZPG19 Alters the Gut Microbiota Composition of Kunming Mice
molecules Article Prodigiosin of Serratia marcescens ZPG19 Alters the Gut Microbiota Composition of Kunming Mice Xue Li 1 , Xinfeng Tan 1, Qingshuang Chen 1, Xiaoling Zhu 2, Jing Zhang 1,*, Jie Zhang 1,* and Baolei Jia 1,* 1 State Key Laboratory of Biobased Material and Green Papermaking, School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250000, China; [email protected] (X.L.); [email protected] (X.T.); [email protected] (Q.C.) 2 Shandong Academy of Agricultural Sciences, Jinan 250000, China; [email protected] * Correspondence: [email protected] (J.Z.); [email protected] (J.Z.); [email protected] (B.J.) Abstract: Prodigiosin is a red pigment produced by Serratia marcescens with anticancer, antimalarial, and antibacterial effects. In this study, we extracted and identified a red pigment from a culture of S. marcescens strain ZPG19 and investigated its effect on the growth performance and intestinal micro- biota of Kunming mice. High-performance liquid chromatography/mass spectrometry revealed that the pigment had a mass-to-charge ratio (m/z) of 324.2160, and thus it was identified as prodigiosin. To investigate the effect of prodigiosin on the intestinal microbiota, mice (n = 5) were administered 150 µg/kg/d prodigiosin (crude extract, 95% purity) via the drinking water for 18 days. Administra- tion of prodigiosin did not cause toxicity in mice. High-throughput sequencing analysis revealed that prodigiosin altered the cecum microbiota abundance and diversity; the relative abundance of Desulfovibrio significantly decreased, whereas Lactobacillus reuteri significantly increased. This finding indicates that oral administration of prodigiosin has a beneficial effect on the intestinal microbiota of mice. -
Transcription Factor Eepr Is Required for Serratia Marcescens Host Proinflammatory Response by Corneal Epithelial Cells
antibiotics Article Transcription Factor EepR Is Required for Serratia marcescens Host Proinflammatory Response by Corneal Epithelial Cells Kimberly M. Brothers , Stephen A. K. Harvey and Robert M. Q. Shanks * Charles T. Campbell Ophthalmic Microbiology Laboratory, Department of Ophthalmology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA; [email protected] (K.M.B.); [email protected] (S.A.K.H.) * Correspondence: [email protected]; Tel.: +1-412-647-3537 Abstract: Relatively little is known about how the corneal epithelium responds to vision-threatening bacteria from the Enterobacterales order. This study investigates the impact of Serratia marcescens on corneal epithelial cell host responses. We also investigate the role of a bacterial transcription factor EepR, which is a positive regulator of S. marcescens secretion of cytotoxic proteases and a hemolytic surfactant. We treated transcriptomic and metabolomic analysis of human corneal limbal epithelial cells with wild-type bacterial secretomes. Our results show increased expression of proinflammatory and lipid signaling molecules, while this is greatly altered in eepR mutant-treated corneal cells. Together, these data support the model that the S. marcescens transcription factor EepR is a key regulator of host-pathogen interactions, and is necessary to induce proinflammatory chemokines, cytokines, and lipids. Keywords: bacterial infection; Serratia marcescens; transcription factor; keratitis; ocular surface; epithelium; cornea; metabolomics Citation: Brothers, K.M.; Harvey, S.A.K.; Shanks, R.M.Q. Transcription Factor EepR Is Required for Serratia marcescens Host Proinflammatory 1. Introduction Response by Corneal Epithelial Cells. The cornea, the transparent, anterior layer of the eye, is essential for vision and pro- Antibiotics 10 2021, , 770.