Assessment of the Potential Role of Streptomyces
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Investigating the Relationship Between Amphotericin B and Extracellular
Investigating the relationship between amphotericin B and extracellular vesicles produced by Streptomyces nodosus By Samuel John King A thesis submitted in partial fulfilment of the requirements for the degree of Master of Research School of Science and Health Western Sydney University 2017 Acknowledgements A big thank you to the following people who have helped me throughout this project: Jo, for all of your support over the last two years; Ric, Tim, Shamilla and Sue for assistance with electron microscope operation; Renee for guidance with phylogenetics; Greg, Herbert and Adam for technical support; and Mum, you're the real MVP. I acknowledge the services of AGRF for sequencing of 16S rDNA products of Streptomyces "purple". Statement of Authentication The work presented in this thesis is, to the best of my knowledge and belief, original except as acknowledged in the text. I hereby declare that I have not submitted this material, either in full or in part, for a degree at this or any other institution. ……………………………………………………..… (Signature) Contents List of Tables............................................................................................................... iv List of Figures .............................................................................................................. v Abbreviations .............................................................................................................. vi Abstract ..................................................................................................................... -
Optimization of Alkaline Protease Production by Streptomyces Sp
Vol. 15(26), pp. 1401-1412, 29 June, 2016 DOI: 10.5897/AJB2016.15259 Article Number: 55EE5BD59228 ISSN 1684-5315 African Journal of Biotechnology Copyright © 2016 Author(s) retain the copyright of this article http://www.academicjournals.org/AJB Full Length Research Paper Optimization of alkaline protease production by Streptomyces sp. strain isolated from saltpan environment Boughachiche Faiza1,2 *, Rachedi Kounouz1,2, Duran Robert3, Lauga Béatrice3, Karama Solange3, Bouyoucef Lynda1, Boulezaz Sarra1, Boukrouma Meriem1, Boutaleb Houria1 and Boulahrouf Abderrahmane2 1Institute of Nutrition and Food Processing Technologies. Mentouri Brother University Constantine, Algeria. 2Laboratory of Microbiological Engineering and Applications. Mentouri Brother University Constantine, Algeria. 3Team Environment and Microbiology (EEM), UMR 5254, IPREM. University of Pau and Pays de l'Adour, France. Received 6 February, 2016; Accepted 10 June, 2016 Proteolytic activity of a Streptomyces sp. strain isolated from Ezzemoul saltpans (Algeria) was studied on agar milk at three concentrations. The phenotypic and phylogenetic studies of this strain show that it represents probably new specie. The fermentation is carried out on two different media, prepared at three pH values. The results showed the presence of an alkaline protease with optimal pH and temperature of 8 and 40°C, respectively. The enzyme is stable up to 90°C, having a residual activity of 79% after 90 min. The enzyme production media are optimized according to statistical methods while using two plans of experiences. The first corresponds to the matrixes of Plackett and Burman in N=16 experiences and N-1 factors, twelve are real and three errors. The second is the central composite design of Box and Wilson. -
INVESTIGATING the ACTINOMYCETE DIVERSITY INSIDE the HINDGUT of an INDIGENOUS TERMITE, Microhodotermes Viator
INVESTIGATING THE ACTINOMYCETE DIVERSITY INSIDE THE HINDGUT OF AN INDIGENOUS TERMITE, Microhodotermes viator by Jeffrey Rohland Thesis presented for the degree of Doctor of Philosophy in the Department of Molecular and Cell Biology, Faculty of Science, University of Cape Town, South Africa. April 2010 ACKNOWLEDGEMENTS Firstly and most importantly, I would like to thank my supervisor, Dr Paul Meyers. I have been in his lab since my Honours year, and he has always been a constant source of guidance, help and encouragement during all my years at UCT. His serious discussion of project related matters and also his lighter side and sense of humour have made the work that I have done a growing and learning experience, but also one that has been really enjoyable. I look up to him as a role model and mentor and acknowledge his contribution to making me the best possible researcher that I can be. Thank-you to all the members of Lab 202, past and present (especially to Gareth Everest – who was with me from the start), for all their help and advice and for making the lab a home away from home and generally a great place to work. I would also like to thank Di James and Bruna Galvão for all their help with the vast quantities of sequencing done during this project, and Dr Bronwyn Kirby for her help with the statistical analyses. Also, I must acknowledge Miranda Waldron and Mohammed Jaffer of the Electron Microsope Unit at the University of Cape Town for their help with scanning electron microscopy and transmission electron microscopy related matters, respectively. -
Taxonomic Characterization of Streptomyces Strain CH54-4 Isolated from Mangrove Sediment
Ann Microbiol (2010) 60:299–305 DOI 10.1007/s13213-010-0041-4 ORIGINAL ARTICLE Taxonomic characterization of Streptomyces strain CH54-4 isolated from mangrove sediment Rattanaporn Srivibool & Kanpicha Jaidee & Morakot Sukchotiratana & Shinji Tokuyama & Wasu Pathom-aree Received: 19 January 2010 /Accepted: 9 March 2010 /Published online: 15 April 2010 # Springer-Verlag and the University of Milan 2010 Abstract An actinobacterium, designated as strain CH54-4, wall chemotype I with no characteristic sugar, and type II was isolated from mangrove sediment on the east coast of the polar lipids that typically contain diphosphatidyl glycerol, Gulf of Thailand using starch casein agar. This isolate was phosphatidylinositol, phosphatidylethanolamine, and phos- found to contain chemical markers typical of members of the phatidylinositol mannoside. Members of the genus Strepto- genus Streptomyces: This strain possessed a broad spectrum myces are widely distributed in soils and played important of antimicrobial activity against Gram-positive, Gram- role in soil ecology (Goodfellow and Williams 1983). They negative bacteria and fungi. In addition, this strain also are prolific sources of secondary metabolites, notably showed strong activity against breast cancer cells with an antibiotics (Lazzarini et al. 2000). −1 IC50 value of 2.91 µg ml . Phylogenetic analysis of a 16S The search and discovery of novel microbes for new rRNA gene sequence showed that strain CH54-4 forms a secondary metabolites is significant in the fight against distinct clade within the Streptomyces 16S rRNA gene tree antibiotic resistant pathogens (Bernan et al. 2004) and and closely related to Streptomyces thermocarboxydus. emerging diseases (Taylor et al. 2001). One strategy is to isolate novel actinomycetes from poorly studied habitats to Keywords Mangrove sediment . -
Phylogenetic Study of the Species Within the Family Streptomycetaceae
Antonie van Leeuwenhoek DOI 10.1007/s10482-011-9656-0 ORIGINAL PAPER Phylogenetic study of the species within the family Streptomycetaceae D. P. Labeda • M. Goodfellow • R. Brown • A. C. Ward • B. Lanoot • M. Vanncanneyt • J. Swings • S.-B. Kim • Z. Liu • J. Chun • T. Tamura • A. Oguchi • T. Kikuchi • H. Kikuchi • T. Nishii • K. Tsuji • Y. Yamaguchi • A. Tase • M. Takahashi • T. Sakane • K. I. Suzuki • K. Hatano Received: 7 September 2011 / Accepted: 7 October 2011 Ó Springer Science+Business Media B.V. (outside the USA) 2011 Abstract Species of the genus Streptomyces, which any other microbial genus, resulting from academic constitute the vast majority of taxa within the family and industrial activities. The methods used for char- Streptomycetaceae, are a predominant component of acterization have evolved through several phases over the microbial population in soils throughout the world the years from those based largely on morphological and have been the subject of extensive isolation and observations, to subsequent classifications based on screening efforts over the years because they are a numerical taxonomic analyses of standardized sets of major source of commercially and medically impor- phenotypic characters and, most recently, to the use of tant secondary metabolites. Taxonomic characteriza- molecular phylogenetic analyses of gene sequences. tion of Streptomyces strains has been a challenge due The present phylogenetic study examines almost all to the large number of described species, greater than described species (615 taxa) within the family Strep- tomycetaceae based on 16S rRNA gene sequences Electronic supplementary material The online version and illustrates the species diversity within this family, of this article (doi:10.1007/s10482-011-9656-0) contains which is observed to contain 130 statistically supplementary material, which is available to authorized users. -
Actinobacteriological Research in India
Indian Journal of Experimental Biology Vol. 51, August 2013, pp. 573-596 Review Article Actinobacteriological research in India Sonashia Velho-Pereira & Nandkumar M Kamat* Department of Botany, Goa University, Taleigao Plateau, Goa, 403 206, India Actinobacteria are important sources of compounds for drug discovery and have attracted considerable pharmaceutical, chemical, agricultural and industrial interests. Actinobacteriological research is still in its infancy in India. Early work on actinobacteria started in the 20th century and mostly focused on studying the diversity, identification and screening for antibiotics, enzymes and enzyme inhibitors. Exploration of diverse habitats for the isolation of actinobacteria, have yielded till date 23 novel species. Screening of actinobacteria for antagonistic activity, has led to the discovery of four novel antibiotics. Research on enzymes mostly covered lipases, amylases, proteases, endoglucanases, α-galactosidases, pectin lyases, xylanases, L-asparaginases, L-glutaminase and cellulases. Research on exploiting actinobacteria for other purposes such as production of enzyme inhibitors, single cell protein, bioemulsifier and biosurfactants is still in the experimental stage. This review compiles the work done in last few years, with an emphasis on actinobacterial diversity and bioprospecting for pharmaceutically important compounds like antibiotics, enzymes and other important applications. The chemical creativity and biotechnological potential of Indian actinobacterial strains are yet to be fully -
Universidade Federal De Goiás Instituto De Ciências
UNIVERSIDADE FEDERAL DE GOIÁS INSTITUTO DE CIÊNCIAS BIOLÓGICAS PROGRAMA DE PÓS-GRADUAÇÃO EM CIENCIAS BIOLOGICAS PURIFICAÇÃO E CARACTERIZAÇÃO DE UMA XILANASE PRODUZIDA POR Streptomyces thermocerradoensis CRESCIDO EM FARELO DE TRIGO COMO FONTE DE CARBONO ALONSO ROBERTO POMA TICONA GOIÂNIA 2015 2 UNIVERSIDADE FEDERAL DE GOIÁS INSTITUTO DE CIÊNCIAS BIOLÓGICAS PROGRAMA DE PÓS-GRADUAÇÃO EM CIÊNCIAS BIOLÓGICAS PURIFICAÇÃO E CARACTERIZAÇÃO DE UMA XILANASE PRODUZIDA POR Streptomyces thermocerradoensis CRESCIDO EM FARELO DE TRIGO COMO FONTE DE CARBONO Dissertação apresentada ao programa de pós- graduação em Biologia do Instituto de Ciências Biológicas da Universidade Federal de Goiás por Alonso Roberto Poma Ticona para obtenção do grau de mestre em Biologia. Área de concentração Biologia Celular e Molecular. Orientador: Prof. Dr. Cirano José Ulhoa Co-orientador: Prof. Dr. Luiz Artur Mendes Bataus Goiânia 2015 3 ALONSO ROBERTO POMA TICONA PURIFICAÇÃO E CARACTERIZAÇÃO DE UMA XILANASE PRODUZIDA POR Streptomyces thermocerradoensis CRESCIDO EM FARELO DE TRIGO COMO FONTE DE CARBONO BANCA EXAMINADORA _____________________________________________ Prof. Dr. .................................. Universidade..................................... _____________________________________________ Prof. Dr. ........................ Universidade ................................. _____________________________________________ Profa. Dra. ...................... Universidade............................... Aprovado em: ____/____/________ 4 Dedico este trabalho a meus pais e a minha irmã. Que sempre torceram por mim e foram minha fonte de inspiração para a realização deste trabalho. Quero agradecer por todos os dias em que cuidaram de mim, que apesar da distân cia sempre permaneceram ao meu lado. Aos meus familiares. Eu amo todos vocês. 5 AGRADECIMENTOS Agradeço ao Professor Cirano Jose Ulhoa, pela oportunidade concedida, pela orientação, pela paciência e por acreditar na realização deste trabalho. A Professora Valdirene, por todos os ensinamentos e pela agradável convivência no laboratório. -
International Journal of Pharmacy and Pharmaceutical Sciences
Innovare International Journal of Pharmacy and Pharmaceutical Sciences Academic Sciences ISSN- 0975-1491 Vol 6, Issue 6, 2014 Original Article TAXONOMIC STUDIES AND PHYLOGENETIC CHARACTERIZATION OF POTENTIAL AND PIGMENTED ANTIBIOTIC PRODUCING ACTINOMYCETES ISOLATED FROM RHIZOSPHERE SOILS 1TELUGU VARALAKSHMI *, 2KALVA MADHANA SEKHAR AND 1PETLA BHASKARA BRAMHANANDHA CHARYULU 1Department of Microbiology, Sri Krishna devaraya University, Anantapur-515055, Andhra Pradesh, India. 2Department of Plant Sciences, University of Hyderabad 500046, Andhra Pradesh, India Email: [email protected] Received: 11 May 2014 Revised and Accepted: 12 Jun 2014 ABSTRACT Objective: To investigate the production of antibiotics from pigment producing actinomycetes isolated from the rhizosphere of three different plant soils (Foxtail millet, Groundnut and Mulberry) from different localities of Anantapur region, Andhra Pradesh, India. Methods: A total of 30 actinomycetes were isolated and tested against, pathogenic bacteria and fungi. Out of 30 isolates, 10 promising isolates [A2, A5, A8, A12, A14, A17, A21, A24, A27 and A29] showed activity against pathogenic bacteria and fungi by primary screening. Out of ten active isolates, potential isolate A2 was subjected to secondary screening, identification and fermentation methods. Identification is by morphological, biochemical and molecular methods. A phylogenetic tree was constructed by maximum parsimony method to identify up to the species level. The secondary structure of 16S rRNA and the restriction sites were also predicted using Genebee and NeBCutter online software’s respectively. Fermentation is by submerged state to produce crude extracts. The fermented biomass was extracted by organic solvent extraction method and tested against the bacterial strains by agar well diffusion method. Results: Molecular taxonomy and phylogeny revealed that the strain belongs to the genus Streptomyces and was designated as Streptomyces rameus KCTC 9767. -
Antagonistic Interactions Between Cultivables Actinomycetes Isolated
Vol. 7(26), pp. 3304-3320, 25 June, 2013 DOI: 10.5897/AJMR11.357 ISSN 1996-0808 ©2013 Academic Journals African Journal of Microbiology Research http://www.academicjournals.org/AJMR Full Length Research Paper Antagonistic interactions among cultivable actinomycetes isolated from agricultural soil amended with organic residues Sonia Mokni-Tlili*, Naceur Jedidi and Abdennaceur Hassen Laboratoire de Traitement et Recyclage des Eaux Usées, Centre des Recherches et des Technologies des Eaux, Technopole de Borj Cedria, BP 273, Soliman 8020-Tunisie. Accepted 23 August, 2011 The present work focuses on the antagonistic interactions among cultivable actinomycetes isolated from agricultural soil and organic amendments (farmyard manure and municipal solid waste compost). Antagonistic interactions, assayed by the double-layer agar method, were checked among isolates obtained from (i) the same treatment (ii) control soil (unamended) against those from amendments and (iii) each treatment against tow phytopatogenic bacteria (Agrobacterium tumefaciens B6 and C58). A high suppressive interaction ratio (≥ 50%) was registered some either the treatment soil. It was found that amendments application decreased this suppressive interaction ratio between actinomycetales. But, it increases the ratio of the antagonistic actinomycetales from soil against Agrobacterium tumefaciens confirming the role of these organic residues as fertilizers. It was also shown, based on the phylogenetic affiliation of bacteria, that the antagonism can play a significant role in structuring bacterial communities in soil. Key words: Antagonism, Actinomycetales, agricultural soil, manure, compost. INTRODUCTION Because of their important role on the ecosystem, community; they play an important role in recycling numerous ecological studies of actinomycetale were complex organic materials such as lignocelluloses and conducted in marine habitats: beach sands (Suzuki et al., chitin (Epstein, 1997; Li et al., 2010; Tiquia et al., 2002). -
Staphylococcus Aureus
การประเมินฤทธิ์ต้านจุลินทรีย์ของเชื้อแอคติโนมัยสีท ที่แยกจากดินต่อเชื้อก่อโรคแบบฉวยโอกาส นางสาวปัญจมาภรณ์ จันทเสนา วิทยานิพนธ์นี้เป็นส่วนหนึ่งของการศึกษาตามหลักสูตรปริญญาวิทยาศาสตรมหาบัณฑิต สาขาวิชาชีวเวชศาสตร์ มหาวิทยาลัยเทคโนโลยีสุรนารี ปีการศึกษา 2558 EVALUATION OF ANTIMICROBIAL ACTIVITY OF ACTINOMYCETES ISOLATED FROM SOIL AGAINST OPPORTUNISTIC PATHOGENS Panjamaphon Chanthasena A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science in Biomedical Sciences Suranaree University of Technology Academic Year 2015 EVALUATION OF ANTIMICROBIAL ACTIVITY OF ACTINOMYCETES ISOLATED FROM SOIL AGAINST OPPORTUNISTIC PATHOGENS Suranaree University of Technology has approved this thesis submitted in partial fulfillment of the requirements for a Master’s Degree. Thesis Examining Committee __________________________________ (Asst. Prof. Dr. Rungrudee Srisawat) Chairperson __________________________________ (Dr. Nawarat Nantapong) Member (Thesis Advisor) __________________________________ (Assoc. Prof. Dr. Nuannoi Chudapongse) Member __________________________________ (Dr. Pongrit Krubphachaya) Member ______________________________ __________________________________ (Prof. Dr. Sukit Limpijumnong) (Prof. Dr. Santi Maensiri) Vice Rector for Academic Affairs Dean of Institute of Science and Innovation ปัญจมาภรณ์ จันทเสนา : การประเมินฤทธิ์ต้านจุลินทรีย์ของเชื้อแอคติโนมัยสีทที่แยกจาก ดินต่อเชื้อก่อโรคแบบฉวยโอกาส (EVALUATION OF ANTIMICROBIAL ACTIVITY OF ACTINOMYCETES ISOLATED FROM SOIL AGAINST OPPORTUNISTIC PATHOGENS) -
Chemical and Taxonomic Investigation of Indonesian Soil
Chemical and Taxonomic Investigation of Indonesian Soil-dwelling Bacteria Dissertation der Mathematisch-Naturwissenschaftlichen Fakultät der Eberhard Karls Universität Tübingen zur Erlangung des Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) vorgelegt von Saefuddin Aziz aus Purwokerto/Indonesien Tübingen 2021 Gedruckt mit Genehmigung der Mathematisch-Naturwissenschaftlichen Fakultät der Eberhard Karls Universität Tübingen. Tag der mündlichen Qualifikation: 20.05.2021 Dekan: Prof. Dr. Thilo Stehle 1. Berichterstatter: Prof. Dr. Harald Groß 2. Berichterstatter: PD Dr. Bertolt Gust Declaration I, Saefuddin Aziz declare that this thesis is an original report of my research, has been written by myself and has not been submitted for any previous degree. The experimental work is almost entirely my own work; the collaborative contributions have been indicated clearly and acknowledged. Due references have been provided on all supporting literatures and resources. Parts of this work have been published in Aziz, S., Mast, Y., Wohlleben, W., & Gross, H. (2018). Draft genome sequence of the pristinamycin-producing strain Streptomyces sp. SW4, isolated from soil in Nusa Kambangan, Indonesia. Microbiology resource announcements, 7(7). Tübingen, 29.03.2021 i Zusammenfassung Ziel des Projekts war es, taxonomisch neuartige bakterielle Stämme aus dem Biodiversitäts- Brennpunkt Indonesien zu isolieren und hieraus neue chemische Verbindungen zu isolieren. Zu diesem Zweck wurden 25 Stämme gesammelt und auf antimikrobielle Eigenschaften hin untersucht. Daraus resultierend wurden zunächst fünf und im späteren Verlauf dann nur noch ausschließlich die beiden Stämme Streptomyces sp. SW4 und Pseudomonas aeruginosa SW5 priorisiert. Während der Stamm SW5 nur bekannte Naturstoffe produzierte und eine bereits bekannte Spezies darstellte, erwies sich der Stamm SW4 im Rahmen von polyphasischen taxonomischen Untersuchungen als völlig neuartige Spezies. -
Natural Products from Actinobacteria Associated with Fungus-Growing
Natural products from Actinobacteria associated with fungus-growing termites René Benndorf,1 Huijuan Guo,1 Elisabeth Sommerwerk,1 Christiane Weigel,1 Maria Garcia-Altares,1 Karin Martin,1 Haofu Hu,2 Michelle Küfner,1 Z. Wilhelm de Beer,3 Michael Poulsen,2 Christine Beemelmanns1* 1Leibniz Institute for Natural Product Research and Infection Biology – Hans-Knöll-Institute, Beutenbergstraße 11a, 07745 Jena, Germany; [email protected], [email protected], [email protected], [email protected], [email protected], [email protected], [email protected] [email protected] 2Section for Ecology and Evolution, Department of Biology, University of Copenhagen, 2100 Copenhagen East, Denmark; [email protected], [email protected] 3Department of Microbiology and Plant Pathology, Forestry and Agriculture Biotechnology Institute, University of Pretoria, 0001 Pretoria, South Africa; [email protected] *Correspondence: [email protected]; Tel.: +49 3641 532-1525 Table of Content TABLE S1. INFORMATION OF COLONIES OF MACROTERMES NATALENSIS (MN) USED FOR ISOLATION OF ACTINOBACTERIA FOR METATRANSCRIPTOME DATA (INCLUDING ONE ODONTOTERMES COLONY [OD]), ALONG WITH THEIR GEOGRAPHIC LOCATIONS AND YEAR OF COLLECTION. ............................................... 4 TABLE S2. STRAINS ISOLATED FROM FUNGUS-GROWING TERMITES, INCLUDING THE MEDIUM THEY WERE INITIALLY ISOLATED ON, THEIR ID AND THE ID OF THE CHEMICAL EXTRACT. ........................................... 5 TABLE S3. IDENTITIES OF ISOLATED ACTINOBACTERIAL STRAINS, INCLUDING THE TOP THREE HITS RESULTING FROM BLASTN SEARCHES AGAINST THE NCBI DATABASE (HTTPS://BLAST.NCBI.NLM.NIH.GOV/BLAST.CGI, LAST VISIT 26.07.2018, 00:58 AM). ................................. 8 TABLE S4. ECOLOGICALLY RELEVANT FUNGAL S USED AS TARGETS IN THE BIOACTIVITY TESTS.