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Chilling Out: the Evolution and Diversification of Psychrophilic Algae with a Focus on Chlamydomonadales
Polar Biol DOI 10.1007/s00300-016-2045-4 REVIEW Chilling out: the evolution and diversification of psychrophilic algae with a focus on Chlamydomonadales 1 1 1 Marina Cvetkovska • Norman P. A. Hu¨ner • David Roy Smith Received: 20 February 2016 / Revised: 20 July 2016 / Accepted: 10 October 2016 Ó Springer-Verlag Berlin Heidelberg 2016 Abstract The Earth is a cold place. Most of it exists at or Introduction below the freezing point of water. Although seemingly inhospitable, such extreme environments can harbour a Almost 80 % of the Earth’s biosphere is permanently variety of organisms, including psychrophiles, which can below 5 °C, including most of the oceans, the polar, and withstand intense cold and by definition cannot survive at alpine regions (Feller and Gerday 2003). These seemingly more moderate temperatures. Eukaryotic algae often inhospitable places are some of the least studied but most dominate and form the base of the food web in cold important ecosystems on the planet. They contain a huge environments. Consequently, they are ideal systems for diversity of prokaryotic and eukaryotic organisms, many of investigating the evolution, physiology, and biochemistry which are permanently adapted to the cold (psychrophiles) of photosynthesis under frigid conditions, which has (Margesin et al. 2007). The environmental conditions in implications for the origins of life, exobiology, and climate such habitats severely limit the spread of terrestrial plants, change. Here, we explore the evolution and diversification and therefore, primary production in perpetually cold of photosynthetic eukaryotes in permanently cold climates. environments is largely dependent on microbes. Eukaryotic We highlight the known diversity of psychrophilic algae algae and cyanobacteria are the dominant photosynthetic and the unique qualities that allow them to thrive in severe primary producers in cold habitats, thriving in a surprising ecosystems where life exists at the edge. -
Divergence of AMP Deaminase in the Ice Worm Mesenchytraeus Solifugus (Annelida, Clitellata, Enchytraeidae)
SAGE-Hindawi Access to Research International Journal of Evolutionary Biology Volume 2009, Article ID 715086, 10 pages doi:10.4061/2009/715086 Research Article Divergence of AMP Deaminase in the Ice Worm Mesenchytraeus solifugus (Annelida, Clitellata, Enchytraeidae) Roberto Marotta,1 Bradley R. Parry,2 and Daniel H. Shain2 1 Department of Biology, University of Milano, via Celoria 26, 20133 Milano, Italy 2 Department of Biology, Rutgers The State University of New Jersey, 315 Penn Street, Science Building, Camden, NJ 08102, USA Correspondence should be addressed to Daniel H. Shain, [email protected] Received 7 April 2009; Accepted 22 May 2009 Recommended by Dan Graur Glacier ice worms, Mesenchytraeus solifugus and related species, are the largest glacially obligate metazoans. As one component of cold temperature adaptation, ice worms maintain atypically high energy levels in an apparent mechanism to offset cold temperature-induced lethargy and death. To explore this observation at a mechanistic level, we considered the putative contribution of 5 adenosine monophosphate deaminase (AMPD), a key regulator of energy metabolism in eukaryotes. We cloned cDNAs encoding ice worm AMPD, generating a fragment encoding 543 amino acids that included a short N-terminal region and complete C-terminal catalytic domain. The predicted ice worm AMPD amino acid sequence displayed conservation with homologues from other mesophilic eukaryotes with notable exceptions. In particular, an ice worm-specific K188E substitution proximal to the AMP binding site likely alters the architecture of the active site and negatively affects the enzyme’s activity. Paradoxically, this would contribute to elevated intracellular ATP levels, which appears to be a signature of cold adapted taxa. -
A Taxonomic Reassessment of Chlamydomonas Meslinii (Volvocales, Chlorophyceae) with a Description of Paludistella Gen.Nov
Phytotaxa 432 (1): 065–080 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.432.1.6 A taxonomic reassessment of Chlamydomonas meslinii (Volvocales, Chlorophyceae) with a description of Paludistella gen.nov. HANI SUSANTI1,6, MASAKI YOSHIDA2, TAKESHI NAKAYAMA2, TAKASHI NAKADA3,4 & MAKOTO M. WATANABE5 1Life Science Innovation, School of Integrative and Global Major, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan. 2Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8577, Japan. 3Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan. 4Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-8520, Japan. 5Algae Biomass Energy System Development and Research Center, University of Tsukuba. 6Research Center for Biotechnology, Indonesian Institute of Sciences, Jl. Raya Bogor KM 46 Cibinong West Java, Indonesia. Corresponding author: [email protected] Abstract Chlamydomonas (Volvocales, Chlorophyceae) is a large polyphyletic genus that includes numerous species that should be classified into independent genera. The present study aimed to examine the authentic strain of Chlamydomonas meslinii and related strains based on morphological and molecular data. All the strains possessed an asteroid chloroplast with a central pyrenoid and hemispherical papilla; however, they were different based on cell and stigmata shapes. Molecular phylogenetic analyses based on 18S rDNA, atpB, and psaB indicated that the strains represented a distinct subclade in the clade Chloromonadinia. The secondary structure of ITS-2 supported the separation of the strains into four species. -
Divergence of AMP Deaminase in the Ice Worm Mesenchytraeus Solifugus (Annelida, Clitellata, Enchytraeidae)
SAGE-Hindawi Access to Research International Journal of Evolutionary Biology Volume 2009, Article ID 715086, 10 pages doi:10.4061/2009/715086 Research Article Divergence of AMP Deaminase in the Ice Worm Mesenchytraeus solifugus (Annelida, Clitellata, Enchytraeidae) Roberto Marotta,1 Bradley R. Parry,2 and Daniel H. Shain2 1 Department of Biology, University of Milano, via Celoria 26, 20133 Milano, Italy 2 Department of Biology, Rutgers The State University of New Jersey, 315 Penn Street, Science Building, Camden, NJ 08102, USA Correspondence should be addressed to Daniel H. Shain, [email protected] Received 7 April 2009; Accepted 22 May 2009 Recommended by Dan Graur Glacier ice worms, Mesenchytraeus solifugus and related species, are the largest glacially obligate metazoans. As one component of cold temperature adaptation, ice worms maintain atypically high energy levels in an apparent mechanism to offset cold temperature-induced lethargy and death. To explore this observation at a mechanistic level, we considered the putative contribution of 5 adenosine monophosphate deaminase (AMPD), a key regulator of energy metabolism in eukaryotes. We cloned cDNAs encoding ice worm AMPD, generating a fragment encoding 543 amino acids that included a short N-terminal region and complete C-terminal catalytic domain. The predicted ice worm AMPD amino acid sequence displayed conservation with homologues from other mesophilic eukaryotes with notable exceptions. In particular, an ice worm-specific K188E substitution proximal to the AMP binding site likely alters the architecture of the active site and negatively affects the enzyme’s activity. Paradoxically, this would contribute to elevated intracellular ATP levels, which appears to be a signature of cold adapted taxa. -
The Symbiotic Green Algae, Oophila (Chlamydomonadales
University of Connecticut OpenCommons@UConn Master's Theses University of Connecticut Graduate School 12-16-2016 The yS mbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History Nikolaus Schultz University of Connecticut - Storrs, [email protected] Recommended Citation Schultz, Nikolaus, "The yS mbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History" (2016). Master's Theses. 1035. https://opencommons.uconn.edu/gs_theses/1035 This work is brought to you for free and open access by the University of Connecticut Graduate School at OpenCommons@UConn. It has been accepted for inclusion in Master's Theses by an authorized administrator of OpenCommons@UConn. For more information, please contact [email protected]. The Symbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History Nikolaus Eduard Schultz B.A., Trinity College, 2014 A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science at the University of Connecticut 2016 Copyright by Nikolaus Eduard Schultz 2016 ii ACKNOWLEDGEMENTS This thesis was made possible through the guidance, teachings and support of numerous individuals in my life. First and foremost, Louise Lewis deserves recognition for her tremendous efforts in making this work possible. She has performed pioneering work on this algal system and is one of the preeminent phycologists of our time. She has spent hundreds of hours of her time mentoring and teaching me invaluable skills. For this and so much more, I am very appreciative and humbled to have worked with her. Thank you Louise! To my committee members, Kurt Schwenk and David Wagner, thank you for your mentorship and guidance. -
A Probable Oligochaete from an Early Triassic Lagerstätte of the Southern Cis-Urals and Its Evolutionary Implications
Editors' choice A probable oligochaete from an Early Triassic Lagerstätte of the southern Cis-Urals and its evolutionary implications DMITRY E. SHCHERBAKOV, TARMO TIMM, ALEXANDER B. TZETLIN, OLEV VINN, and ANDREY Y. ZHURAVLEV Shcherbakov, D.E., Timm, T., Tzetlin, A.B., Vinn, O., and Zhuravlev, A.Y. 2020. A probable oligochaete from an Early Triassic Lagerstätte of the southern Cis-Urals and its evolutionary implications. Acta Palaeontologica Polonica 65 (2): 219–233. Oligochaetes, despite their important role in terrestrial ecosystems and a tremendous biomass, are extremely rare fossils. The palaeontological record of these worms is restricted to some cocoons, presumable trace fossils and a few body fossils the most convincing of which are discovered in Mesozoic and Cenozoic strata. The Olenekian (Lower Triassic) siliciclastic lacustrine Petropavlovka Lagerstätte of the southern Cis-Urals yields a number of extraordinary freshwater fossils including an annelid. The segmented body with a secondary annulation of this fossil, a subtriangular prostomium, a relatively thick layered body wall and, possibly, the presence of a genital region point to its oligochaete affinities. Other fossil worms which have been ascribed to clitellates are reviewed and, with a tentative exception of two Pennsylvanian finds, affinities of any pre-Mesozoic forms to clitellate annelids are rejected. The new fossil worm allows tracing of a persuasive oligochaete record to the lowermost Mesozoic and confirms a plausibility of the origin of this annelid group in freshwater conditions. Key words: Annelida, Clitellata, Oligochaeta, Mesozoic, Lagerstätte, Russia. Dmitry E. Shcherbakov [[email protected]], Borissiak Palaeontological Institute, Russian Academy of Sciences, Profso- yuz naya St 123, Moscow 117647, Russia. -
The Biogeography of Green Algae Associated with Red Snow in Japan
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by National Institute of Polar Research Repository The Biogeography of Green Algae Associated with Red Snow in Japan Ryota Ito1, Masashi Murakami1, Nozomu Takeuchi2 1Department of Biology, Graduate School of Science, Chiba University, Japan 2Department of Earth Science, Graduate School of Science, Chiba University, Japan Red snow is a world-wide phenomenon which is the changes in the color of snow surface into red. Red snow is known to be caused by the bloom of green algae, mainly Chlamydomonas nivalis (Takeuchi et al., 2006). Because a snow surface with red color decreases its albedo, it implies that red snow accelerates snow melting (Thomas and Duval, 1995, Yallop et al. 2012). Increasing melting of ice should be a big problem because it would lead to the loss of habitats of polar animals and a cause a flood and water-level elevation. Therefore, understanding the mechanism of the colonization and establishment of microbes associated with red snow is important in evaluating the risk of ice thawing. However, little is known about the mechanism of the determinants of their distribution. Two conflicting views exist in the mechanism of distribution of snow algae. First, snow algae is cosmopolitan with migrating widely through the atmosphere, which is implied by Baas-Becking hypothesis (Baas-Becking 1934). Another view is that the snow algae is endemic, which is an idea that snow algae keep resting in soil, and move up to snow surface from the soil when it is covered by snow (Hoham, 2001). -
Chilling Out: the Evolution and Diversification of Psychrophilic Algae with a Focus on Chlamydomonadales
Polar Biol (2017) 40:1169–1184 DOI 10.1007/s00300-016-2045-4 REVIEW Chilling out: the evolution and diversification of psychrophilic algae with a focus on Chlamydomonadales 1 1 1 Marina Cvetkovska • Norman P. A. Hu¨ner • David Roy Smith Received: 20 February 2016 / Revised: 20 July 2016 / Accepted: 10 October 2016 / Published online: 21 October 2016 Ó Springer-Verlag Berlin Heidelberg 2016 Abstract The Earth is a cold place. Most of it exists at or Introduction below the freezing point of water. Although seemingly inhospitable, such extreme environments can harbour a Almost 80 % of the Earth’s biosphere is permanently variety of organisms, including psychrophiles, which can below 5 °C, including most of the oceans, the polar, and withstand intense cold and by definition cannot survive at alpine regions (Feller and Gerday 2003). These seemingly more moderate temperatures. Eukaryotic algae often inhospitable places are some of the least studied but most dominate and form the base of the food web in cold important ecosystems on the planet. They contain a huge environments. Consequently, they are ideal systems for diversity of prokaryotic and eukaryotic organisms, many of investigating the evolution, physiology, and biochemistry which are permanently adapted to the cold (psychrophiles) of photosynthesis under frigid conditions, which has (Margesin et al. 2007). The environmental conditions in implications for the origins of life, exobiology, and climate such habitats severely limit the spread of terrestrial plants, change. Here, we explore the evolution and diversification and therefore, primary production in perpetually cold of photosynthetic eukaryotes in permanently cold climates. environments is largely dependent on microbes. -
Western Siberia)
BIO Web of Conferences 16, 00022 (2019) https://doi.org/10.1051/bioconf/20191600022 Results and Prospects of Geobotanical Research in Siberia The «red snow» of the Polar Urals (Western Siberia) Yuriy Naumenko* Central Siberian Botanical Garden, SB RAS, 630090, Zolotodolinskaja Str., 101, Novosibirsk, Russia Abstract: Pink-red colored snow fields were sampled in the area of Ochety Lake (the Polar Urals, West Siberia) at the altitude of 272 m above the sea level in August 2019. Zygospores of Chlamydomonas nivalis prevailed in plant communities. Altogether, 9 species of algae have been discovered in snow samples: 7 species of Cyanoprokaryota, 1 species of Bacillariophyta and 1 species of Chlorophyta. Tinted snow is observed rather frequently in the mountains and polar regions. Red snow was first scientifically mentioned by Horace de Saussure, a Swiss natural scientist, in 1760. He discovered it at the foot of the Alpes in the Duchy of Savoy in France [1]. Analogous findings were later noted in different areas of the Alpes, Pyrenees, in the north of Scandinavia, in Alyaska, in polar countries and other places. I. V. Palibin was the first who mention pink and red snow in the European part of Russia. In 1901, he took part in the polar expedition on “Yermak” icebreaker, where he studied flora of Franz Josef Land, Spitzbergen and Severny (Northern) island of Novaya Zemlya. He observed the red snow phenomenon on Novaya Zemlya near Mashigin Bay and in the area of Matochkin Strait where pink snow is encountered in ravines, mountain slopes, almost everywhere. Research demonstrated that the red tint of snow is caused by the development of Chlamydomonas nivalis (F.A.Bauer) Wille algae. -
"Phycology". In: Encyclopedia of Life Science
Phycology Introductory article Ralph A Lewin, University of California, La Jolla, California, USA Article Contents Michael A Borowitzka, Murdoch University, Perth, Australia . General Features . Uses The study of algae is generally called ‘phycology’, from the Greek word phykos meaning . Noxious Algae ‘seaweed’. Just what algae are is difficult to define, because they belong to many different . Classification and unrelated classes including both prokaryotic and eukaryotic representatives. Broadly . Evolution speaking, the algae comprise all, mainly aquatic, plants that can use light energy to fix carbon from atmospheric CO2 and evolve oxygen, but which are not specialized land doi: 10.1038/npg.els.0004234 plants like mosses, ferns, coniferous trees and flowering plants. This is a negative definition, but it serves its purpose. General Features Algae range in size from microscopic unicells less than 1 mm several species are also of economic importance. Some in diameter to kelps as long as 60 m. They can be found in kinds are consumed as food by humans. These include almost all aqueous or moist habitats; in marine and fresh- the red alga Porphyra (also known as nori or laver), an water environments they are the main photosynthetic or- important ingredient of Japanese foods such as sushi. ganisms. They are also common in soils, salt lakes and hot Other algae commonly eaten in the Orient are the brown springs, and some can grow in snow and on rocks and the algae Laminaria and Undaria and the green algae Caulerpa bark of trees. Most algae normally require light, but some and Monostroma. The new science of molecular biology species can also grow in the dark if a suitable organic carbon has depended largely on the use of algal polysaccharides, source is available for nutrition. -
Articles (Laps) Soil
The Cryosphere, 15, 133–148, 2021 https://doi.org/10.5194/tc-15-133-2021 © Author(s) 2021. This work is distributed under the Creative Commons Attribution 4.0 License. Spectral characterization, radiative forcing and pigment content of coastal Antarctic snow algae: approaches to spectrally discriminate red and green communities and their impact on snowmelt Alia L. Khan1,2, Heidi M. Dierssen3, Ted A. Scambos4, Juan Höfer5,6, and Raul R. Cordero7 1Department of Environmental Sciences, Huxley College of the Environment, Western Washington University, Bellingham, WA, USA 2National Snow and Ice Data Center, Cooperative Institute for Research in Environmental Sciences, University of Colorado – Boulder, Boulder, CO, USA 3Department of Marine Sciences and Geography, University of Connecticut, Groton, CT, USA 4Earth Science and Observation Center, Cooperative Institute for Research in Environmental Sciences, University of Colorado – Boulder, Boulder, CO, USA 5Escuela de Ciencias del Mar, Pontificia Universidad Católica de Valparaíso, Valparaíso, Chile 6Centro FONDAP de Investigación en Dinámica de Ecosistemas Marinos de Altas Latitudes (IDEAL), Valdivia, Chile 7Department of Physics, University of Santiago, Av. Bernardo O’Higgins 3363, Santiago, Chile Correspondence: Alia L. Khan ([email protected]) Received: 21 June 2020 – Discussion started: 10 August 2020 Revised: 15 October 2020 – Accepted: 13 November 2020 – Published: 13 January 2021 Abstract. Here, we present radiative forcing (RF) estimates ∼ 2522 m3 of snow melted by green-colored algae and ∼ by snow algae in the Antarctic Peninsula (AP) region from 1218 m3 of snow melted by red-colored algae annually over multi-year measurements of solar radiation and ground- the summer, suggesting snow algae play a significant role in based hyperspectral characterization of red and green snow snowmelt in the AP regions where they occur. -
Kenai National Wildlife Refuge Species List - Kenai - U.S
Kenai National Wildlife Refuge Species List - Kenai - U.S. Fish and Wild... http://www.fws.gov/refuge/Kenai/wildlife_and_habitat/species_list.html Kenai National Wildlife Refuge | Alaska Kenai National Wildlife Refuge Species List Below is a checklist of the species recorded on the Kenai National Wildlife Refuge. The list of 1865 species includes 34 mammals, 154 birds, one amphibian, 20 fish, 611 arthropods, 7 molluscs, 11 other animals, 493 vascular plants, 180 bryophytes, 29 fungi, and 325 lichens. Of the total number of species, 1771 are native, 89 are non-native, and five include both native and non-native subspecies. Non-native species are indicated by dagger symbols (†) and species having both native and non-native subspecies are indicated by double dagger symbols (‡). Fifteen species no longer occur on the Refuge, indicated by empty set symbols ( ∅). Data were updated on 15 October 2015. See also the Kenai National Wildlife Refuge checklist on iNaturalist.org ( https://www.inaturalist.org/check_lists/188476-Kenai-National-Wildlife- Refuge-Check-List ). Mammals ( #1 ) Birds ( #2 ) Amphibians ( #3 ) Fish ( #4 ) Arthropods ( #5 ) Molluscs ( #6 ) Other Animals ( #7 ) Vascular Plants ( #8 ) Other Plants ( #9 ) Fungi ( #10 ) Lichens ( #11 ) Change Log ( #changelog ) Mammals () Phylum Chordata Class Mammalia Order Artiodactyla Family Bovidae 1. Oreamnos americanus (Blainville, 1816) (Mountain goat) 2. Ovis dalli Nelson, 1884 (Dall's sheep) Family Cervidae 3. Alces alces (Linnaeus, 1758) (Moose) 4. Rangifer tarandus (Linnaeus, 1758) (Caribou) Order Carnivora Family Canidae 5. Canis latrans Say, 1823 (Coyote) 6. Canis lupus Linnaeus, 1758 (Gray wolf) 7. Vulpes vulpes (Linnaeus, 1758) (Red fox) Family Felidae 8. Lynx lynx (Linnaeus, 1758) (Lynx) 9.