Agonist and Antagonistinduced Upregulation of Surface 5HT3A
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International Journal of Molecular Sciences Article Phenotypic Subtyping and Re-Analysis of Existing Methylation Data from Autistic Probands in Simplex Families Reveal ASD Subtype-Associated Differentially Methylated Genes and Biological Functions Elizabeth C. Lee y and Valerie W. Hu * Department of Biochemistry and Molecular Medicine, The George Washington University, School of Medicine and Health Sciences, Washington, DC 20037, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-202-994-8431 Current address: W. Harry Feinstone Department of Molecular Microbiology and Immunology, y Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA. Received: 25 August 2020; Accepted: 17 September 2020; Published: 19 September 2020 Abstract: Autism spectrum disorder (ASD) describes a group of neurodevelopmental disorders with core deficits in social communication and manifestation of restricted, repetitive, and stereotyped behaviors. Despite the core symptomatology, ASD is extremely heterogeneous with respect to the severity of symptoms and behaviors. This heterogeneity presents an inherent challenge to all large-scale genome-wide omics analyses. In the present study, we address this heterogeneity by stratifying ASD probands from simplex families according to the severity of behavioral scores on the Autism Diagnostic Interview-Revised diagnostic instrument, followed by re-analysis of existing DNA methylation data from individuals in three ASD subphenotypes in comparison to that of their respective unaffected siblings. We demonstrate that subphenotyping of cases enables the identification of over 1.6 times the number of statistically significant differentially methylated regions (DMR) and DMR-associated genes (DAGs) between cases and controls, compared to that identified when all cases are combined. Our analyses also reveal ASD-related neurological functions and comorbidities that are enriched among DAGs in each phenotypic subgroup but not in the combined case group. -
A Posterior Probability of Linkage & Association Study
A POSTERIOR PROBABILITY OF LINKAGE & ASSOCIATION STUDY OF 111 AUTISM CANDIDATE GENES B y FANG CHEN A dissertation submitted to the Graduate School – New Brunswick Rutgers, The State University of New Jersey and The Graduate School of Biomedical Sciences University of Medicine and Dentistry of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Microbiology and Molecular Genetics Written under the direction of Dr. Tara C. Matise & Dr. Jay Tischfield And approved by ____________________ _____________________ ____________________ _____________________ ____________________ _____________________ New Brunswick, New Jersey May, 2009 ABSTRACT OF THE DISSERTATION A Posterior Probability of Linkage & Association Study of 111 Autism Candidate Genes B y FANG CHEN Dissertation directors: Dr. Tara C. Matise & Dr. Jay Tischfield Autism is a neurodevelopmental disorder with a complex genetic basis. In this study we investigated the possible involvement of 111 candidate genes in autism by studying 386 patient families from the Autism Genetic Resource Exchange (AGRE). These genes were selected based on their functions that relate to the neurotransmission or central developmental system. In phase 1 of the study, 1497 tagSNPs were selected to efficiently capture the haplotype information of each gene and were genotyped in 265 AGRE nuclear families. The cleaned genotype data were analyzed through the Kelvin program to compute values of Posterior Probability of Linkage (PPL) and Posterior Probability of LD given linkage (PPLD), which directly measure the probability of linkage and/or association. Consistent supportive evidence for linkage was observed for EPHB6-EPHA1 locus at the 7q34 region by two- and multi-point PPL analysis. -
Ion Channels
UC Davis UC Davis Previously Published Works Title THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels. Permalink https://escholarship.org/uc/item/1442g5hg Journal British journal of pharmacology, 176 Suppl 1(S1) ISSN 0007-1188 Authors Alexander, Stephen PH Mathie, Alistair Peters, John A et al. Publication Date 2019-12-01 DOI 10.1111/bph.14749 License https://creativecommons.org/licenses/by/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2019/20: Ion channels. British Journal of Pharmacology (2019) 176, S142–S228 THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels Stephen PH Alexander1 , Alistair Mathie2 ,JohnAPeters3 , Emma L Veale2 , Jörg Striessnig4 , Eamonn Kelly5, Jane F Armstrong6 , Elena Faccenda6 ,SimonDHarding6 ,AdamJPawson6 , Joanna L Sharman6 , Christopher Southan6 , Jamie A Davies6 and CGTP Collaborators 1School of Life Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK 2Medway School of Pharmacy, The Universities of Greenwich and Kent at Medway, Anson Building, Central Avenue, Chatham Maritime, Chatham, Kent, ME4 4TB, UK 3Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK 4Pharmacology and Toxicology, Institute of Pharmacy, University of Innsbruck, A-6020 Innsbruck, Austria 5School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, BS8 1TD, UK 6Centre for Discovery Brain Science, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2019/20 is the fourth in this series of biennial publications. The Concise Guide provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to the open access knowledgebase source of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. -
Structural Basis for Functional Modulation of Pentameric Ligand-Gated Ion Channels
STRUCTURAL BASIS FOR FUNCTIONAL MODULATION OF PENTAMERIC LIGAND-GATED ION CHANNELS by YVONNE W. GICHERU Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Thesis Advisor: Sudha Chakrapani, Ph.D. Department of Physiology and Biophysics CASE WESTERN RESERVE UNIVERSITY May 2019 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of YVONNE W. GICHERU Candidate for the degree of Physiology and Biophysics* Witold Surewicz (Committee Chair) Matthias Buck Stephen Jones Vera Moiseenkova-Bell Rajesh Ramachandran Sudha Chakrapani March 27, 2019 *We also certify that written approval has been obtained for any proprietary material contained therein. Dedication To my family, friends, mentors, and all who have supported me through this process, thank you. Table of Contents List of Figures .................................................................................................... iv List of Abbreviations .......................................................................................... v Abstract .............................................................................................................. vi Chapter 1 ............................................................................................................. 1 Introduction .................................................................................................... 1 1.1 Pentameric ligand-gated ion channel (pLGIC) superfamily ...................... 2 1.2 pLGIC architecture -
A Bioinformatics Model of Human Diseases on the Basis Of
SUPPLEMENTARY MATERIALS A Bioinformatics Model of Human Diseases on the basis of Differentially Expressed Genes (of Domestic versus Wild Animals) That Are Orthologs of Human Genes Associated with Reproductive-Potential Changes Vasiliev1,2 G, Chadaeva2 I, Rasskazov2 D, Ponomarenko2 P, Sharypova2 E, Drachkova2 I, Bogomolov2 A, Savinkova2 L, Ponomarenko2,* M, Kolchanov2 N, Osadchuk2 A, Oshchepkov2 D, Osadchuk2 L 1 Novosibirsk State University, Novosibirsk 630090, Russia; 2 Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, Novosibirsk 630090, Russia; * Correspondence: [email protected]. Tel.: +7 (383) 363-4963 ext. 1311 (M.P.) Supplementary data on effects of the human gene underexpression or overexpression under this study on the reproductive potential Table S1. Effects of underexpression or overexpression of the human genes under this study on the reproductive potential according to our estimates [1-5]. ↓ ↑ Human Deficit ( ) Excess ( ) # Gene NSNP Effect on reproductive potential [Reference] ♂♀ NSNP Effect on reproductive potential [Reference] ♂♀ 1 increased risks of preeclampsia as one of the most challenging 1 ACKR1 ← increased risk of atherosclerosis and other coronary artery disease [9] ← [3] problems of modern obstetrics [8] 1 within a model of human diseases using Adcyap1-knockout mice, 3 in a model of human health using transgenic mice overexpressing 2 ADCYAP1 ← → [4] decreased fertility [10] [4] Adcyap1 within only pancreatic β-cells, ameliorated diabetes [11] 2 within a model of human diseases -
Investigating the Pharmacology of Novel 5-HT3 Receptor Ligands; with the Potential to Treat Neuropsychiatric and Gastrointestinal Disorders
Investigating the pharmacology of novel 5-HT3 receptor ligands; with the potential to treat neuropsychiatric and gastrointestinal disorders by Alexander Roberts A thesis submitted to the University of Birmingham for the Degree of Doctor of Philosophy Institute of Clinical Sciences College of Medical and Dental Sciences University of Birmingham February 2020 University of Birmingham Research Archive e-theses repository This unpublished thesis/dissertation is copyright of the author and/or third parties. The intellectual property rights of the author or third parties in respect of this work are as defined by The Copyright Designs and Patents Act 1988 or as modified by any successor legislation. Any use made of information contained in this thesis/dissertation must be in accordance with that legislation and must be properly acknowledged. Further distribution or reproduction in any format is prohibited without the permission of the copyright holder. Abstract The 5-hydroxytryptamine (5-HT; serotonin) 5-HT3 receptor is an excitatory ligand- gated ion channel expressed in for example the brain and the gastrointestinal tract. Two major subtypes of the receptor have been studied in the most detail; the homomeric 5-HT3A receptor and the heteromeric 5-HT3AB receptor. 5-HT3 receptor antagonists are used clinically to treat chemotherapy induced and post-operative nausea and vomiting, and demonstrate symptomatic relief in diarrhoea-predominant irritable bowel syndrome (IBS-d); but unfortunately, these medications cause adverse effects such as constipation or rarely ischemic colitis in the latter condition. This study has characterised the pharmacology of two structurally distinct 5-HT3 receptor partial agonists (vortioxetine and CSTI-300); and identified the unique binding properties of the cryptic orthosteric modulator 5-chloroindole (Cl-indole) for the human (h) 5-HT3 receptor. -
Genomic Risk for Severe Canine Compulsive Disorder, a Dog Model of Human OCD Nicholas H
Genomic Risk for Severe Canine Compulsive Disorder, a Dog Model of Human OCD Nicholas H. Dodman1* Edward I. Ginns2 Louis Shuster3 Alice A. Moon-Fanelli1 Marzena Galdzicka2 Jiashun Zheng4 Alison L. Ruhe5 Mark W. Neff6 1Tufts Cummings School of Veterinary Medicine, 200 Westboro Road, N. Grafton, MA 01536 2University of Massachusetts Medical School, 55 N Lake Avenue, Worcester, MA 01655. 3Tufts University School of Medicine, 136 Harrison Avenue, Boston, MA 02111 4University of California, San Francisco, 1700 4th St., San Francisco, CA 94143-2542 5ProjectDog, 636 San Pablo Avenue, Albany, CA 94706 6Van Andel Institute, 333 Bostwick Ave N.E., Grand Rapids, MI 49503 Corresponding author: Dr. Nicholas Dodman Tufts Cummings School of Veterinary Medicine 200 Westboro Road North Grafton, MA 01536 508.887.4640 [email protected] KEY WORDS: anxiety, obsessive- graphics have enriched purebred populations compulsive disorder, CDH2, CTXN3, for founder effect mutations with tractable HTR3C, HTR3D, HTR3E, SLC12A2, stress architectures, making genotypic analyses response, Teneurin-3 advantageous. Over a pet’s lifetime, own- ers observe the animal’s stress tolerance, ABBREVIATIONS: CCD, canine compulsive arousal, and anxiety, and can inform on rich disorder; CRF, corticotropin-releasing behavioral profiles for phenotypic analy- factor; HPA, hypothalamic-pituitary-adrenal ses. Here we leverage these strengths in a axis; OCD, obsessive-compulsive disorder. search for inherited fac-tors that exacerbate ABSTRACT canine compulsive disorder (CCD), the dog counterpart to human obsesssive compulsive Dogs naturally suffer the same complex disorder (OCD). Our rationale is that iden- diseases as humans, including mental ill- tifying pathways that predispose to disease ness. The dog is uniquely suited as a model severity will expand therapeutic options, organism to explore the genetics of neuro- and ultimately bring relief to those patients psychiatric disorders. -
Classification and Signaling Characteristics of 5-HT Receptors
Classification and Signaling Characteristics of 5-HT Receptors: Towards the Concept of 5-HT Receptosomes Philippe Marin, Carine Becamel, Séverine Chaumont-Dubel, Franck Vandermoere, Joël Bockaert, Sylvie Claeysen To cite this version: Philippe Marin, Carine Becamel, Séverine Chaumont-Dubel, Franck Vandermoere, Joël Bockaert, et al.. Classification and Signaling Characteristics of 5-HT Receptors: Towards the Concept of5-HT Receptosomes. Handbook of Behavioral Neuroscience, 31 (Chapter 5), pp.91-120, 2020, Handbook of Behavioral Neurobiology of Serotonin, 10.1016/B978-0-444-64125-0.00005-0. hal-02491823 HAL Id: hal-02491823 https://hal.archives-ouvertes.fr/hal-02491823 Submitted on 26 Feb 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Classification and Signaling Characteristics of 5-HT Receptors: Towards the Concept of 5-HT Receptosomes Philippe Marin, Carine Bécamel, Séverine Chaumont-Dubel, Franck Vandermoere, Joël Bockaert, Sylvie Claeysen IGF, Univ. Montpellier, CNRS, INSERM, Montpellier, France. Corresponding author: Dr Philippe Marin, Institut de Génomique Fonctionnelle, 141 rue de la Cardonille, 34094 Montpellier Cedex 5, France. Email: [email protected] Phone: +33 434 35 92 42. Other contact information: Dr Carine Bécamel, Institut de Génomique Fonctionnelle, 141 rue de la Cardonille, 34094 Montpellier Cedex 5, France. -
Output Results of CLIME (Clustering by Inferred Models of Evolution)
Output results of CLIME (CLustering by Inferred Models of Evolution) Dataset: Num of genes in input gene set: 9 Total number of genes: 20834 Prediction LLR threshold: 0 The CLIME PDF output two sections: 1) Overview of Evolutionarily Conserved Modules (ECMs) Top panel shows the predefined species tree. Bottom panel shows the partition of input genes into Evolutionary Conserved Modules (ECMs), ordered by ECM strength (shown at right), and separated by horizontal lines. Each row show one gene, where the phylogenetic profile indicates presence (blue) or absence (gray) of homologs in each species (column). Gene symbols are shown at left. Gray color indicates that the gene is a paralog to a higher scoring gene within the same ECM (based on BLASTP E < 1e-3). 2) Details of each ECM and its expansion ECM+ Top panel shows the inferred evolutionary history on the predefined species tree. Branch color shows the gain event (blue) and loss events (red color, with brighter color indicating higher confidence in loss). Branches before the gain or after a loss are shown in gray. Bottom panel shows the input genes that are within the ECM (blue/white rows) as well as all genes in the expanded ECM+ (green/gray rows). The ECM+ includes genes likely to have arisen under the inferred model of evolution relative to a background model, and scored using a log likelihood ratio (LLR). PG indicates "paralog group" and are labeled alphabetically (i.e., A, B). The first gene within each paralog group is shown in black color. All other genes sharing sequence similarity (BLAST E < 1e-3) are assigned to the same PG label and displayed in gray. -
An Enigmatic Case of Cardiac Death in an 18-Years Old Girl
European Review for Medical and Pharmacological Sciences 2021; 25: 4999-5005 An enigmatic case of cardiac death in an 18-years old girl G.A. LANZA1, M. COLL2, S. GRASSI3, V. ARENA4, O. CAMPUZANO5, L. CALÒ6, E. DE RUVO6, R. BRUGADA7, A. OLIVA3 1Department of Cardiovascular Sciences, Fondazione Policlinico A. Gemelli IRCCS, Università Cattolica del Sacro Cuore, Roma, Italy 2Cardiovascular Genetics Centre, University of Girona, Girona, Spain 3Department of Health Surveillance and Bioethics, Fondazione Policlinico A. Gemelli IRCCS, Università Cattolica del Sacro Cuore, Roma, Italy 4Department of Woman and Child Health and Public Health, Fondazione Policlinico A. Gemelli IRCCS, Università Cattolica del Sacro Cuore, Roma, Italy 5Centro Investigación Biomédica en Red Enfermedades Cardiovasculares (CIBERCV), Madrid, Spain 6Division of Cardiology, Policlinico Casilino, ASL Rome B, Roma, Italy 7Department of Medical Science, University of Girona, Girona, Spain Abstract. – We report a case of unusual and of death related to severe abnormalities of the unexplained cardiac death in an 18-years old electrical activation of the heart, eventually re- female patient with congenital neurosensori- sulting in hemodynamic compromise and death. al deafness. The fatal event was characterized by an initial syncopal episode, associated with Clinical Case a wide QRS tachycardia (around 110 bpm) but stable hemodynamic conditions. The patient, An 18-years old girl was referred to the Emer- however, subsequently developed severe hypo- gency Department (ED) of a hospital in Rome, tension and progressive bradyarrhythmias until Italy, after a syncopal episode, occurring while asystole and lack of cardiac response to resus- she was at school. Syncope was preceded by sub- citation maneuvers and ventricular pacing. -
The Hypothalamus As a Hub for SARS-Cov-2 Brain Infection and Pathogenesis
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.08.139329; this version posted June 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. The hypothalamus as a hub for SARS-CoV-2 brain infection and pathogenesis Sreekala Nampoothiri1,2#, Florent Sauve1,2#, Gaëtan Ternier1,2ƒ, Daniela Fernandois1,2 ƒ, Caio Coelho1,2, Monica ImBernon1,2, Eleonora Deligia1,2, Romain PerBet1, Vincent Florent1,2,3, Marc Baroncini1,2, Florence Pasquier1,4, François Trottein5, Claude-Alain Maurage1,2, Virginie Mattot1,2‡, Paolo GiacoBini1,2‡, S. Rasika1,2‡*, Vincent Prevot1,2‡* 1 Univ. Lille, Inserm, CHU Lille, Lille Neuroscience & Cognition, DistAlz, UMR-S 1172, Lille, France 2 LaBoratorY of Development and PlasticitY of the Neuroendocrine Brain, FHU 1000 daYs for health, EGID, School of Medicine, Lille, France 3 Nutrition, Arras General Hospital, Arras, France 4 Centre mémoire ressources et recherche, CHU Lille, LiCEND, Lille, France 5 Univ. Lille, CNRS, INSERM, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Center for Infection and ImmunitY of Lille (CIIL), Lille, France. # and ƒ These authors contriButed equallY to this work. ‡ These authors directed this work *Correspondence to: [email protected] and [email protected] Short title: Covid-19: the hypothalamic hypothesis 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.06.08.139329; this version posted June 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Transcriptome Profiling Reveals the Complexity of Pirfenidone Effects in IPF
ERJ Express. Published on August 30, 2018 as doi: 10.1183/13993003.00564-2018 Early View Original article Transcriptome profiling reveals the complexity of pirfenidone effects in IPF Grazyna Kwapiszewska, Anna Gungl, Jochen Wilhelm, Leigh M. Marsh, Helene Thekkekara Puthenparampil, Katharina Sinn, Miroslava Didiasova, Walter Klepetko, Djuro Kosanovic, Ralph T. Schermuly, Lukasz Wujak, Benjamin Weiss, Liliana Schaefer, Marc Schneider, Michael Kreuter, Andrea Olschewski, Werner Seeger, Horst Olschewski, Malgorzata Wygrecka Please cite this article as: Kwapiszewska G, Gungl A, Wilhelm J, et al. Transcriptome profiling reveals the complexity of pirfenidone effects in IPF. Eur Respir J 2018; in press (https://doi.org/10.1183/13993003.00564-2018). This manuscript has recently been accepted for publication in the European Respiratory Journal. It is published here in its accepted form prior to copyediting and typesetting by our production team. After these production processes are complete and the authors have approved the resulting proofs, the article will move to the latest issue of the ERJ online. Copyright ©ERS 2018 Copyright 2018 by the European Respiratory Society. Transcriptome profiling reveals the complexity of pirfenidone effects in IPF Grazyna Kwapiszewska1,2, Anna Gungl2, Jochen Wilhelm3†, Leigh M. Marsh1, Helene Thekkekara Puthenparampil1, Katharina Sinn4, Miroslava Didiasova5, Walter Klepetko4, Djuro Kosanovic3, Ralph T. Schermuly3†, Lukasz Wujak5, Benjamin Weiss6, Liliana Schaefer7, Marc Schneider8†, Michael Kreuter8†, Andrea Olschewski1,