Overview of Pathology and Its Related Disciplines - Soheir Mahmoud Mahfouz
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Job Posting Clinical Microbiology Final
The Department of Pathology & Cell Biology at Columbia University Irving Medical Center (CUIMC) is recruiting for an MD, MD/PhD, or PhD academic clinical microbiologist of any rank to join our faculty as a Medical Director of the NewYork-Presbyterian/CUIMC Clinical Microbiology Laboratory. Applicants should have an established track record of accomplishment within the field of clinical microbiology and a demonstrated ability to lead an experienced group of laboratory technologists, supervisors, and staff. In addition to strong clinical and technical skills, particular emphasis is placed on candidates with a demonstrated record of collegiality and inter-departmental collaboration. Applicants must have completed a fellowship in clinical microbiology and be board-certified/board-eligible in Medical and Public Health Microbiology through the American Board of Medical Microbiology (ABMM) or board-certified/board- eligible in Clinical Pathology with subspecialty certification in Medical Microbiology through the American Board of Pathology (ABP). The applicant must also be able to satify clinical licensing requirements to serve as a Laboratory Director in New York State. The successful applicant will help oversee diagnostic testing in the areas of Bacteriology, Virology, Mycobacteriology, Mycology, and Parasitology. The position also includes responsibilities for teaching of pathology residents, medical students, infectious diseases fellows, and technical staff. Applicants must be currently involved in ongoing research with a track record of publications in the field. The position offers a competitive salary commensurate with training and experience, and an appointment to the faculty of the Columbia University Vagelos College of Physicians & Surgeons. The Clinical Microbiology Laboratory at NewYork-Presbyterian/CUIMC is located in the Washington Heights neighborhood of New York City, offering unparalleled opportunities to work and live in a thriving, diverse, metropolitan environment with access to world-class cultural institutions, restaurants, and entertainment. -
Role of NS1 Antibodies in the Pathogenesis of Acute Secondary Dengue Infection
ARTICLE DOI: 10.1038/s41467-018-07667-z OPEN Role of NS1 antibodies in the pathogenesis of acute secondary dengue infection Deshni Jayathilaka1, Laksiri Gomes1, Chandima Jeewandara1, Geethal.S.Bandara Jayarathna1, Dhanushka Herath1, Pathum Asela Perera1, Samitha Fernando1, Ananda Wijewickrama2, Clare S. Hardman3, Graham S. Ogg3 & Gathsaurie Neelika Malavige 1,3 The role of NS1-specific antibodies in the pathogenesis of dengue virus infection is poorly 1234567890():,; understood. Here we investigate the immunoglobulin responses of patients with dengue fever (DF) and dengue hemorrhagic fever (DHF) to NS1. Antibody responses to recombinant-NS1 are assessed in serum samples throughout illness of patients with acute secondary DENV1 and DENV2 infection by ELISA. NS1 antibody titres are significantly higher in patients with DHF compared to those with DF for both serotypes, during the critical phase of illness. Furthermore, during both acute secondary DENV1 and DENV2 infection, the antibody repertoire of DF and DHF patients is directed towards distinct regions of the NS1 protein. In addition, healthy individuals, with past non-severe dengue infection have a similar antibody repertoire as those with mild acute infection (DF). Therefore, antibodies that target specific NS1 epitopes could predict disease severity and be of potential benefit in aiding vaccine and treatment design. 1 Centre for Dengue Research, University of Sri Jayewardenepura, Nugegoda 10100, Sri Lanka. 2 National Institute of Infectious Diseases, Angoda 10250, Sri Lanka. 3 MRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, Oxford NIHR Biomedical Research Centre, Oxford OX3 9DS, UK. These authors contributed equally: Deshni Jayathilaka, Laksiri Gomes. The authors jointly supervised this work: Graham S. -
Corneal Endotheliitis with Cytomegalovirus Infection of Persisted
Correspondence 1105 Sir, resulted in gradual decreases of KPs, but graft oedema Corneal endotheliitis with cytomegalovirus infection of persisted. Vision decreased to 20/2000. corneal stroma The patient underwent a second keratoplasty combined with cataract surgery in August 2007. Although involvement of cytomegalovirus (CMV) in The aqueous humour was tested for polymerase corneal endotheliitis was recently reported, the chain reaction to detect HSV, VZV, or CMV; a positive pathogenesis of this disease remains uncertain.1–8 Here, result being obtained only for CMV-DNA. Pathological we report a case of corneal endotheliitis with CMV examination demonstrated granular deposits in the infection in the corneal stroma. deep stroma, which was positive for CMV by immunohistochemistry (Figures 2a and b). The cells showed a typical ‘owl’s eye’ morphology (Figure 2c). Case We commenced systemic gancyclovir at 10 mg per day A 44-year-old man was referred for a gradual decrease in for 7 days, followed by topical 0.5% gancyclovir eye vision with a history of recurrent iritis with unknown drops six times a day. With the postoperative follow-up aetiology. The corrected visual acuity in his right eye was period of 20 months, the graft remained clear without 20/200. Slit lamp biomicroscopy revealed diffuse corneal KPs (Figure 1d). The patient has been treated with oedema with pigmented keratic precipitates (KPs) gancyclovir eye drops t.i.d. to date. His visual acuity without anterior chamber cellular reaction (Figure 1a). improved to 20/20, and endothelial density was The patient had undergone penetrating keratoplasty in 2300/mm2. Repeated PCR in aqueous humour for August 2006, and pathological examination showed non- CMV yielded a negative result in the 10th week. -
DUKE UNIVERSITY School of Medicine Pathologists' Assistant
DUKE UNIVERSITY School of Medicine Pathologists’ Assistant Program Department of Pathology Academic Programs The Department of Pathology at Duke University offers a wide array of training programs to fit individual requirements and goals. The Residency Training program is an ACGME approved program and is available as an Anatomic Pathology/Clinical Pathology combined program, a shorter Anatomic Pathology only program, or an Anatomic Pathology/Neuropathology program. Subspecialty fellowships in Cytopathology, Dermatopathology, Hematopathology, Medical Microbiology, and Neuropathology are also ACGME approved. These programs provide the highest quality of graduate medical education by drawing on the depth and breadth of faculty expertise in the Department in all aspects of anatomic and clinical pathology and the availability of a wide variety of often complex clinical cases seen at Duke University Health System. For medical students interested in a career in Pathology pre-doctoral fellowships, internships and externships are available. Research Training in Experimental pathology can be obtained through Pre- and postdoctoral fellowships of one to five years. All pre-doctoral fellows are candidates for the Ph.D. degree in pathology. The Ph.D. is optional in postdoctoral programs, which provide didactic and research training in various aspects of modern experimental pathology. A two year NAACLS accredited Pathologists’ Assistant Program leads to a Master of Health Science degree, certifies graduates to sit for the ASCP Board of Certification examination, and leads to exciting career opportunities in a variety of anatomic pathology laboratory settings. Pathologists’ assistants are analogous to physician assistants, but with highly specialized training in autopsy and surgical pathology. This profession was pioneered in the Duke Department of Pathology 50 years ago, and is one of only twelve such programs in existence today. -
Chlamydia Trachomatis Infection Is Driven by Nonprotective Immune Cells That Are Distinct from Protective Populations
Pathology after Chlamydia trachomatis infection is driven by nonprotective immune cells that are distinct from protective populations Rebeccah S. Lijeka,b,1, Jennifer D. Helblea, Andrew J. Olivea,c, Kyra W. Seigerb, and Michael N. Starnbacha,1 aDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115; bDepartment of Biological Sciences, Mount Holyoke College, South Hadley, MA 01075; and cDepartment of Microbiology and Physiological Systems, University of Massachusetts Medical School, Worcester, MA 01605 Edited by Rafi Ahmed, Emory University, Atlanta, GA, and approved December 27, 2017 (received for review June 23, 2017) Infection with Chlamydia trachomatis drives severe mucosal immu- sequence identity, Chlamydia muridarum, the extent to which the nopathology; however, the immune responses that are required for molecular pathogenesis of C. muridarum represents that of Ct is mediating pathology vs. protection are not well understood. Here, unknown (6). Ct serovar L2 (Ct L2) is capable of infecting the we employed a mouse model to identify immune responses re- mouse upper genital tract when inoculated across the cervix into quired for C. trachomatis-induced upper genital tract pathology the uterus (7, 8) but it does not induce robust immunopathology. and to determine whether these responses are also required for This is consistent with the human disease phenotype caused by Ct L2, bacterial clearance. In mice as in humans, immunopathology was which disseminates to the lymph nodes causing lymphogranuloma characterized by extravasation of leukocytes into the upper genital venereum (LGV) and is not a major cause of mucosal immunopa- thology in the female upper genital tract (uterus and ovaries). tract that occluded luminal spaces in the uterus and ovaries. -
Pathology and Pathogenesis of SARS-Cov-2 Associated with Fatal Coronavirus Disease, United States Roosecelis B
Pathology and Pathogenesis of SARS-CoV-2 Associated with Fatal Coronavirus Disease, United States Roosecelis B. Martines,1 Jana M. Ritter,1 Eduard Matkovic, Joy Gary, Brigid C. Bollweg, Hannah Bullock, Cynthia S. Goldsmith, Luciana Silva-Flannery, Josilene N. Seixas, Sarah Reagan-Steiner, Timothy Uyeki, Amy Denison, Julu Bhatnagar, Wun-Ju Shieh, Sherif R. Zaki; COVID-19 Pathology Working Group2 An ongoing pandemic of coronavirus disease (CO- United States; since then, all 50 US states, District of VID-19) is caused by infection with severe acute respi- Columbia, Guam, Puerto Rico, Northern Mariana Is- ratory syndrome coronavirus 2 (SARS-CoV-2). Charac- lands, and US Virgin Islands have confirmed cases of terization of the histopathology and cellular localization COVID-19 (2–4). of SARS-CoV-2 in the tissues of patients with fatal CO- Coronaviruses are enveloped, positive-strand- VID-19 is critical to further understand its pathogenesis ed RNA viruses that infect many animals; human- and transmission and for public health prevention mea- adapted viruses likely are introduced through zoo- sures. We report clinicopathologic, immunohistochemi- notic transmission from animal reservoirs (5,6). Most cal, and electron microscopic findings in tissues from known human coronaviruses are associated with 8 fatal laboratory-confirmed cases of SARS-CoV-2 in- mild upper respiratory illness. SARS-CoV-2 belongs fection in the United States. All cases except 1 were in to the group of betacoronaviruses that includes severe residents of long-term care facilities. In these patients, SARS-CoV-2 infected epithelium of the upper and lower acute respiratory syndrome coronavirus (SARS-CoV) airways with diffuse alveolar damage as the predominant and Middle East respiratory syndrome coronavirus pulmonary pathology. -
Printable Version
Clinical Pathology Laboratories Drugs of Abuse Testing Offering our clients state-of-the-art testing is part of CPL’s ongoing commitment to excellence. Effective 06/18/2018, Clinical Pathology Laboratories (CPL) will replace current drug of abuse (DAU) screening and screening with reflex confirmation profiles. The new profiles provide: • Reformulation and recombination of classes for profile testing, more relevant to current societal trends • Standardization of drug thresholds to high sensitivity cutoff values • Addition of the following analytes in specific profiles for testing: o Fentanyl o Buprenorphine o 6-Acetylmorphine o MDMA (Ecstasy) • Expansion of testing for adulterants with disqualifying comments added to specimens determined to be altered • Expansion of interpretive notes on reports regarding the method, cutoff values, and specific drugs that may or may not be detected by the screening method New Profile Name EtOH Opiates Cocaine Fentanyl Oxycodone Order Code Methadone Barbiturates Cannabinoids Phencyclidine Acetylmorphine Buprenorphine Amphetamines MDMA/Ecstasy - Benzodiazepines 6 Drug of Abuse, 8 Analytes 3305 X X X X X X X X No Confirm Drug of Abuse, 8 Analytes 3306 X X X X X X X X w/ Confirm Drug of Abuse, 9 Analytes 3316 X X X X X X X X X w/ EtOH, No Confirm Drug of Abuse, 9 Analytes 3315 X X X X X X X X X w/ EtOH, w/ Confirm Drug of Abuse, 9 Analytes 3307 X X X X X X X X X No THC or Confirm Drug of Abuse, 9 Analytes 3308 X X X X X X X X X No THC, w/ Confirm Drug of Abuse, 10 Analytes 3317 X X X X X X X X X X No Confirm -
Clinical Pathology, Immunopathology and Advanced Vaccine Technology in Bovine Theileriosis: a Review
pathogens Review Clinical Pathology, Immunopathology and Advanced Vaccine Technology in Bovine Theileriosis: A Review Onyinyechukwu Ada Agina 1,2,* , Mohd Rosly Shaari 3, Nur Mahiza Md Isa 1, Mokrish Ajat 4, Mohd Zamri-Saad 5 and Hazilawati Hamzah 1,* 1 Department of Veterinary Pathology and Microbiology, Faculty of Veterinary Medicine, Universiti Putra Malaysia, Serdang 43400, Malaysia; [email protected] 2 Department of Veterinary Pathology and Microbiology, Faculty of Veterinary Medicine, University of Nigeria Nsukka, Nsukka 410001, Nigeria 3 Animal Science Research Centre, Malaysian Agricultural Research and Development Institute, Headquarters, Serdang 43400, Malaysia; [email protected] 4 Department of Veterinary Pre-clinical sciences, Faculty of Veterinary Medicine, Universiti Putra Malaysia, Serdang 43400, Malaysia; [email protected] 5 Research Centre for Ruminant Diseases, Faculty of Veterinary Medicine, Universiti Putra Malaysia, Serdang 43400, Malaysia; [email protected] * Correspondence: [email protected] (O.A.A.); [email protected] (H.H.); Tel.: +60-11-352-01215 (O.A.A.); +60-19-284-6897 (H.H.) Received: 2 May 2020; Accepted: 16 July 2020; Published: 25 August 2020 Abstract: Theileriosis is a blood piroplasmic disease that adversely affects the livestock industry, especially in tropical and sub-tropical countries. It is caused by haemoprotozoan of the Theileria genus, transmitted by hard ticks and which possesses a complex life cycle. The clinical course of the disease ranges from benign to lethal, but subclinical infections can occur depending on the infecting Theileria species. The main clinical and clinicopathological manifestations of acute disease include fever, lymphadenopathy, anorexia and severe loss of condition, conjunctivitis, and pale mucous membranes that are associated with Theileria-induced immune-mediated haemolytic anaemia and/or non-regenerative anaemia. -
Department of Experimental Pathology, Immunology and Microbiology 531
Department of Experimental Pathology, Immunology and Microbiology 531 Department of Experimental Pathology, Immunology and Microbiology Interim Chairperson: Zaatari, Ghazi Vice Chairperson: Matar, Ghassan Professors: Abdelnoor, Alexander; Khouri, Samia; Matar, Ghassan; Sayegh, Mohamed; Zaatari, Ghazi Associate Professor: Rahal, Elias Assistant Professors: Al-Awar, Ghassan; El Hajj, Hiba; Shirinian, Margret; Zaraket, Hassan The Department of Experimental Pathology, Immunology and Microbiology offers courses to medical laboratory sciences (MLSP) students as well as nursing, medical, and graduate students. It offers a graduate program (discipline of Microbiology and Immunology) leading to a master’s degree (MS) or doctoral degree (PhD) in Biomedical sciences. The requirements for admission to the graduate program are stated on page 33 of this catalogue. IDTH 203 The immune System in Health and Disease 37.28; 3 cr. See Interdepartmental Courses. IDTH 205 Microbiology and Infectious Diseases 37.28; 5 cr. See Interdepartmental Courses. MBIM 223 Parasitology for MLSP Students 39.39; 4 cr. Second semester. MBIM 237 Microbiology and Immunology for Nursing Degree Students 32.64; 3 cr. A course on the fundamental aspects of medical microbiology and immunology for nursing students. Second semester. MBIM 260 Elective in Infectious Diseases for Medicine III and IV 0.180 A course on basic evaluation, diagnosis, and management of infectious diseases. One month. MBIM 261 Elective in Immunology for Medicine III and IV 0.180 A course that is an introduction to immunological research and its application to clinical practice. One month. MBIM 310 Basic Immunology 32.32; 3 cr. A course on innate and adaptive immune mechanisms, infection and immunity, vaccination, immune mechanisms in tissue injury and therapeutic immunology. -
Deciphering the Triad of Infection, Immunity and Pathology
INSIGHT DISEASE Deciphering the triad of infection, immunity and pathology The factors which drive and control disease progression can be inferred from mathematical models that integrate measures of immune responses, data from tissue sampling and markers of infection dynamics. FREDERIK GRAW immune actors in the body. Now, in eLife, Related research article Myers MA, Smith Amber Smith and colleagues at St. Jude Child- AP, Lane LC, Moquin DJ, Aogo R, Woolard ren’s Research Hospital, the University of Ten- S, Thomas P, Vogel P, Smith AM. 2021. nessee Health Science Center and the Dynamically linking influenza virus infection Washington University School of Medicine – kinetics, lung injury, inflammation, and dis- including Margaret Myers and Amanda Smith as ease severity. eLife 10:e68864. doi: 10. joing first authors – report how viral infection, 7554/eLife.68864 counteracting immune responses and lung pathology interact as mice fight off influenza A (Myers et al., 2021). First, the team tracked how viral load and the number of CD8+ T cells, an important immune fever, a cough, a splitting headache... actor that helps to clear infected cells, pro- Being sick often comes with tell-tale gressed over time. In combination with mathe- A signs which worsen as the disease pro- matical models, these measurements allowed gresses and tissues become damaged. These Myers et al. to estimate several parameters that symptoms result from complex interactions reflect the pace at which the virus replicates, the between the infecting pathogen, the inflamma- strength of the immune response, and the inter- tion process, and the response from the immune actions between these processes. -
Badgerconnect 2019 Program
Badger Connect Workshops UW RESEARCH SERVICES FAIR Research investigators, post docs, students, and staff Hosted by UW Carbone UW Lab Cores Cancer Center & Vendors and School of Medicine and FOOD Poster Session Public Health HEALTH SCIENCES OCT LEARNING CENTER 9TH 750 Highland Ave., Main Atrium 12-5:30 cancer.wisc.edu/research/BadgerConnect BadgerConnect Research Services Fair October 9th, 2019 12:00 – 5:30 PM, HSLC Atrium AGENDA 12:00 – 12:30pm Registration / Networking Registration table and networking at booths open at 12pm 12:30 – 2:00pm Flash Talks Lunch (Rm 1306 HSLC) ~4 minute flash talks by research services throughout lunch 15’ Break/Networking 2:15 – 2:45pm Workshop Session I Rm 1220 HSLC Rm 1222 HSLC Rm 1244 HSLC Reference Grade De Novo Assemblies and Whole Team Science 101: How to How to create a tissue Topic Transcriptomes: See the Big build, lead, and manage a microarray (TMA) Picture With Pacbio SMRT team that does great science Sequencing UW Translational Research Biotechnology Center DNA Team Science - ICTR and Service Initiatives in Pathology Lab Sequencing Facility UWCCC Vendor n/a Pacific Biosciences n/a 15’ Break/Networking 3:00 – 3:30pm Workshop Session II Rm 1220 HSLC Rm 1222 HSLC Rm 1244 HSLC LabArchives: The Electronic Hyperfinder: Computational Creating Novel Disease Models Topic Lab Notebook Service for Sorting for High-Dimensional with CRISPR Campus Flow Cytometry Data UW Genome Editing and Animal Electronic Lab Notebook Flow Cytometry Lab Service Models Core Service Integrated DNA Technologies, Vendor LabArchives -
MEDICAL UNIVERSITY of SOUTH CAROLINA Charleston, SC
MEDICAL UNIVERSITY OF SOUTH CAROLINA Charleston, SC PROGRAMS OFFERED The Department of Pathology and Laboratory Medicine of the Medical University of South Carolina offers a fully accredited training program in anatomic and clinical pathology (AP/CP). The AP/CP program consists of a 39 month core curriculum with 9 months of elective. Anatomic Pathology core rotations include autopsy pathology/forensic pathology, surgical pathology, cytopathology, dermatopathology and VA pathology. Clinical Pathology core rotations include hematopathology, immunopathology, clinical chemistry, microbiology, tranfusion medicine, apheresis, histocompatibility laboratory, molecular pathology, cytogenetics, VA pathology, laboratory management and informatics. Nine months elective time is available for more in-depth studies in areas of special interest and/or research. A graduate (PhD) program in experimental pathology is available and may be coordinated with the residency training program. Fellowships are offered at the discretion of the Chair in forensic pathology, dermatopathology, cytopathology, surgical pathology, gastrointestinal pathology, hematopathology and clinical chemistry. TYPES AND NUMBERS OF APPOINTMENTS The institution is accredited for twenty-two residency positions in anatomic pathology and clinical pathology, with an even distribution of residents at all levels. Persons seeking the PhD degree in experimental pathology must meet the requirements of the College of Graduate Studies, Medical University of South Carolina. The department participates