Assessment of the Status of Oregon Populations of Natural Coho Salmon Spawners in the Lower Columbia River, 2002 E. T. Brown S
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Assessment of the Status of Oregon Populations of Natural Coho Salmon Spawners in the Lower Columbia River, 2002 E. T. Brown S. E. Jacobs D. A. Kreager Oregon Department of Fish and Wildlife 3406 Cherry Drive N. E. Salem, Oregon 97303 September 2003 This work was financed in part by the Columbia River Fisheries Development Program (Mitchell Act) administered by NOAA Fisheries, Project NA17FH1628. CONTENTS INTRODUCTION ...................................................................................................... 1 BACKGROUND ....................................................................................................... 1 MONITORING DESIGN............................................................................................ 2 METHODS................................................................................................................ 5 RESULTS AND DISCUSSION ................................................................................. 6 Assessment of Survey Conditions........................................................................ 6 Spawn Timing ......................................................................................................... 8 Spawning Distribution.......................................................................................... 13 Coded-Wire Tag Recoveries ................................................................................ 15 Trends In Spawner Abundance ........................................................................... 17 Estimates of Spawner Abundance ...................................................................... 19 PLANS FOR 2003 .................................................................................................. 22 ACKNOWLEDGEMENTS ...................................................................................... 23 REFERENCES ....................................................................................................... 23 APPENDIX A.......................................................................................................... 25 Randomly Selected Spawning Surveys, 2002 .................................................... 25 INTRODUCTION Natural populations of coho salmon inhabiting the lower Columbia River (LCR) are listed as Endangered under the State of Oregon’s Endangered Species Act and are a candidate species for listing under the Federal Endangered Species Act (http://www.nwr.noaa.gov/1salmon/salmesa/cohoswwa.htm). The State of Oregon has developed a plan to recover populations of LCR coho inhabiting tributaries within the state (Chilcote 2003). This plan calls for enhanced efforts to monitor the status and trends of these stocks by providing rigorous annual estimates of spawner abundance. This work is intended to provide a framework for future adult spawner assessment and expansion of monitoring to include juvenile abundance estimates and habitat assessment beginning in 2003. This report describes work accomplished during the first season of enhanced spawner abundance monitoring. BACKGROUND Since 1949, peak counts from spawning fish surveys conducted in ten standard index areas have been used to assess trends of naturally spawning populations of LCR coho salmon. The geographic boundaries for each of these populations are presented in Table 1 and Figure 1. In addition to the index streams, supplemental surveys were conducted between 1959 to1974 to obtain a wider perspective on LCR coho escapement and productivity (Ollerenshaw 2003). Peak counts have trended downward since the early seventies, and in July 1999 the Oregon Fish and Wildlife Commission (OFWC) listed wild (naturally produced) LCR coho salmon as an endangered species. Table 1. Lower Columbia River coho salmon population complex boundary descriptions. Population Stream Spawn Complex Boundary Description Miles Miles All Columbia tributaries from mouth upstream to, and Astoria 383 71 including, the Gnat Creek basin. All Columbia tributaries upstream of Gnat Creek to and Clatskanie 172 35 including the Clatskanie River Basin. All Columbia River tributaries upstream of Clatskanie Scappoose River to but not including the mouth of the Willamette 323 71 River The Clackamas River basin and all tributaries of the 704a 261a Clackamas Willamette River downstream of Willamette Falls 314b 116b All Columbia River tributaries upstream of the mouth of 431a 108a Sandy the Willamette River to and including the Sandy River 169c 21c basin. All Columbia River tributaries upstream of the Sandy Bonneville 325 8 River to and including the Hood River. a Entire basin. b Downstream from North Fork Dam. c Downstream from Marmot Dam. 1 Six population complexes were tentatively identified as independent wild populations and provided the framework for a LCR coho Recovery Plan (Chilcote, 1999). Only two of these complexes, the Sandy and the Clackamas, were believed to harbor self- sustaining wild coho populations. In 2001 funds were appropriated to develop a systematic monitoring program to more comprehensively assess each of the complexes. Figure 1. Geographic boundaries of the six population complexes for coho salmon in the lower Columbia. MONITORING DESIGN The monitoring design for LCR coho was based upon the design developed and used for coastal Oregon coho salmon monitoring efforts (Jacobs et al., 2002), which utilized the U.S. Environmental Protection Agency’s Environmental Monitoring Assessment protocol (EMAP) (Stevens, 2002). The selection frame was created by adapting Stream Net’s 1:1000k Geographic Information System (GIS) coho coverage (http://www.streamnet.org) to identify coho spawning and rearing habitat. Figure 2 depicts the coverage used as a sampling frame. Potential survey sites were selected following EMAP protocol with the goal of establishing 90 spawning survey sites over the entire study area. Points were geographically balanced within each of the six complexes. To allow for contingencies, 124 sites were selected. The geographic locations of randomly selected sites and their outcomes are illustrated in Figure 3. Landownership was determined using County assessors’ databases to reconcile site maps with tax lot information. In cases of absentee or corporate ownership, permission request letters were mailed. In June, biologists 2 assessed selected sites to determine habitat quality and accessibility. All landowners on those sites deemed suitable were contacted. Upon receiving landowner permission, verification crews conducted additional assessments to ensure survey validity in accordance with the Coastal Salmonid Inventory Project protocol (Jacobs and Nickelson, 1998). Spawning survey signs were placed at the boundaries of each survey, and a description was written which included maps and a database of site statistics and information. Landowner information was similarly entered into a database. Figure 2. Map (1:100K) of sampling frame showing areas considered to be coho salmon spawning habitat for the lower Columbia. Some of the1:24K stream reaches selected as spawning habitat included in the sampling frame are not depicted. Spawning habitat upstream from dams is not included in the sampling frame. Ninety of the 124 selected sites (72%) were ultimately verified as suitable for inclusion in the sampling (Table 2 and Appendix A). The geographic distribution of verification sites and their status is shown in Figure 3. The database of spawning habitat and GIS coverage of spawning distribution was revised to reflect the results of field verification. An additional ten standard surveys and one supplementary survey were added to the sample to continue trend information, and are detailed in Table 3. 3 Table 2. Spawning survey site selection by population complex, 2002. Population Spawning Potential Sites Sites Standard Complex Miles Sites Verified Dropped Sites Astoria 71 27 15 12 2 Clatskanie 35 18 16 2 2 Scappoose 71 28 22 7 4 Clackamas 116 41 29 11 2 Sandy 21 5 4 1 0 Bonneville 8 5 4 1 1a Total 322 124 90 34 11 a Supplemental survey site. Figure 3. Outcome of summer of 2002 site verification. Sites that were classified as dropped, inaccessible, or access denied were not surveyed in 2002 but may be randomly selected in the future. Sites that were classified assumed zero are thought to include no spawning habitat, and will be excluded from future site selection. 4 Table 3. Standard and supplemental surveys conducted in the Lower Columbia River, 2002. Seg- Subasin Reach ID ment Survey Name Type Miles Main Stem 30089.00 2 Youngs River Standard 0.3 Main Stem 30171.00 3 Little Creek Standard 1.2 Main Stem 30303.00 1 Carcus Creek Standard 1.3 Upper Clatskanie River Main Stem 30308.50 2 Standard 0.9 (Wilark Unit) Milton Creek 30802.00 2 Salmon Creek Standard 0.3 Milton Creek 30803.00 3 Milton Creek Standard 0.3 S. Scappoose Cr. 30824.00 1 Raymond Creek Standard 1 Sierks Creek N. Scappoose Cr. 30831.00 1 Standard 0.3 (Deep Creek) Main Stem 30896.00 2 Tickle Creek Standard 1.6 Main Stem 30901.00 4 Deep Creek Standard 2 Multnomah Creek 33607.00 1 Multnomah Creek Supplemental 0.1 METHODS Surveys were divided geographically between two two-person crews based in Astoria and Sauvie Island, and one three-person crew based in Clackamas. Surveys were performed within a ten-day rotation, beginning in the second week of October and ending in the third week of January (after two consecutive weeks of zero live counts). Live coho observations were tallied as fin-clipped (adipose), unmarked, unknown mark adults; or as jacks (< 43 cm MEPS length).