In Photosynthetic Reaction Centers, the Free Energy Difference for Electron Transfer Between Quinones Bound at the Primary and S

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In Photosynthetic Reaction Centers, the Free Energy Difference for Electron Transfer Between Quinones Bound at the Primary and S Proc. Nati. Acad. Sci. USA Vol. 86, pp. 2658-2662, April 1989 Biophysics In photosynthetic reaction centers, the free energy difference for electron transfer between quinones bound at the primary and secondary quinone-binding sites governs the observed secondary site specificity KATHLEEN M. GIANGIACOMO* AND P. LESLIE DUTTON Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104 Communicated by Britton Chance, December 2, 1988 ABSTRACT The secondary quinone-binding site (QB site) enquire further into the specificity of the QB site for quinone of bacterial reaction centers from Rhodobacter sphaeroides is structures. We have questioned in particular the methods of generally regarded to be highly specific for its native ubiqui- assay used to establish the binding strength of a quinone to none-10 molecule. We demonstrate here that this is a miscon- the QB site and have drawn upon the detailed general ception rooted in the kinetic methods used to assay for description for QB function that has been developed by occupancy ofa quinone in the QB site. We show that observance Wraight and Stein (11). of occupancy of the QB site, revealed by kinetic assay, is The methods used to assay for the occupancy of a quinone sensitive to the free-energy difference for electron transfer in the QB site rely entirely on kinetic analysis of various between the quinone at the primary quinone-binding site (QA flash-activated electron-transfer reactions within the reaction site) and the QB site (-AG0 ). For many of the compounds center that are altered by the presence ofa functional quinone previously tested for binding at the QB site, the -AGO. between in the QB site. In these methods, an essential requirement for QA and QB is too small to permit detection of the functional quinone in the QB site. With an increased -AGO. achieved by the recognition of a functional occupant of the QB site is replacing the native ubiquinone-10 at the QA site with lower- electron transfer from the light-generated Q- to QB. potential quinones or by testing higher-potential QB candi- Wraight's model, which is summarized in Fig. 1, introduces dates, it is shown that the QB site binds and functions with the other parameters that describe the interaction and reduction unsubstituted 1,4-benzoquinone, 1,4-naphthoquinone, and of quinones at the QB site. This model includes not only the 9,10-phenanthraquinone, as well as with their various substi- rates of quinone interaction with the QB site (kon and koff), tuted forms. Moreover, quinones with the ortho-carbonyl which define the dissociation constant (Kd = koff/kon), but configuration appear to function in a similar manner to also the rates of electron transfer between quinones occu- quinones with the para-carbonyl configuration. pying the QA and QB sites (kab and kba), which define the free energy of the reaction (-AG0- = RT In kab/kba). It is clear The photochemical reaction center of photosynthetic bacte- from Fig. 1 that, under certain conditions, the dissociation ria is an integral membrane protein that contains four bac- constant measured is not the true Kd but is an apparent value teriochlorophylls (BChls), two bacteriopheophytins (BPhs), (Kd). This situation is evident when equilibrium among the and two quinones associated with discrete catalytic sites, three charge-separated states (upper line of the scheme in designated the primary and secondary quinone-binding sites Fig. 1) is attained under conditions when: (QA and QB, respectively; for review, see ref. 1). After light excitation of a special pair of bacteriochlorophylls (BChl2), kab + kba>> kad and kon[Q] + koff >> kad. Ill an electron is transferred by way of BPh to the quinone at the QA site to form the semiquinone (QA) and the state BChl'- Under these conditions, the Kd is dependent on both the Kd QQB, where BChl' is the oxidized cation radical of BChl2 and the -AG' for electron transfer from QA to QB in the (2). The QA then reduces the quinone bound at the QB site to following way: form BChl'QAQB (3, 4) In the bacterial reaction centers from Rhodobacter sphae- K' = Kd/[1 + exp(-A°G_/RT)]. [2] roides the native ubiquinone-10 (UQ-10) molecules can be reversibly removed from both the QA and QB sites (5, 6). Eq. 2 shows that as -AGC° increases the Kd for quinone at Moreover, the QA site can be functionally reconstituted with the QB site decreases and hence will increase the possibility a wide variety of other natural and synthetic quinone struc- of detecting and measuring the functional presence of a tures (6-8). In contrast, with the exception of one observa- quinone in the QB site. We have used this device to re- tion (9), parallel efforts to reconstitute QB activity have been evaluate the specificity of the QB site. successful only with quinones containing the native ubiqui- none (UQ) configuration (10-13). These negative findings to the that the unlike the site, Abbreviations: BPh, bacteriopheophytin; QA, primary quinone- have led sentiment QB site, QA binding site; QB, secondary quinone-binding site; BChl2, special pair is designed to provide stringent binding requirements for the ofbacteriochlorophyll molecules; QA, semiquinone formed in the QA UQ structure (10, 12, 13). However, such a view is not site; QB, semiquinone formed in the QB site; UQ, UQ-10, and UQ-0, entirely consistent with the well-known, broad specificity of ubiquinone, -10, and -0, respectively; - AG0 , free energy difference the QB site for a variety ofherbicide structures (14-16). These for electron transfer from QA to QB; Em, in situ oxidation-reduction apparently unusual characteristics have prompted us to potential; AQ, 9,10-anthraquinone; MeAQ, 1-methyl-9,10-anthraqui- none; BChl, oxidized cation radical of BChl2; cyt c, cytochrome c; BQ, 1,4-benzoquinone. The publication costs of this article were defrayed in part by page charge *To whom reprint requests should be addressed at: B501 Richards payment. This article must therefore be hereby marked "advertisement" Building, 37th and Hamilton Walk, University of Pennsylvania, in accordance with 18 U.S.C. §1734 solely to indicate this fact. Philadelphia, PA 19104. 2658 Downloaded by guest on September 24, 2021 Biophysics: Giangiacorno and Dutton Proc. Natl. Acad. Sci. USA 86 (1989) 2659 kon kab (see ref. 8) with a characteristic rate constant (kad); for example, the kad values for UQ-10 and 9,10-anthraquinone BCh12 QA + [Q] ± BCh12 QA QB >- BCh12 QAQB (AQ) are close to 7 and 70 sec-1, respectively (19). With UQ-10 at both the QA and QB sites, the observed rate constant koff kba for reduction of BChl' is 0.7 sec-1 (21, 22). Under these conditions, the fractional occupancy ofquinone at the QB site is proportional to the fraction of slow phase of the BChl2 kad kad reduction kinetics and is readily observed (10, 11). 2. Ratio ofcyt c oxidized on the second andfirstflashes. kon Z14 With QA present and QB absent in the reaction center, cyt c oxidation occurs only on the first flash (23). However, with BChl2QA + [Q]% BChl2QAQB QB functionally present, the oxidation of Q- by QB permits cyt c oxidation on a second flash. Assuming the QA is koff kinetically capable of reducing QB (see method 3), the second/first flash ratio of cyt c oxidation is governed by QB FIG. 1. Reaction scheme for electron transfer from QA to QB and occupancy and the -AG°_ between QA and (22, quinone binding at the site. QB 24). QB 3. QX to QB electron transfer observed by accompanying electrochromic shifts ofBPh. The formation of Q- induces a MATERIALS AND METHODS shift in the Qy transition of BPh that is distinct from that Reaction Center Preparation. Reaction centers were iso- accompanying the formation of Q- (3, 4). This assay is useful lated from Rb. sphaeroides strain R-26 (17). Extraction of in that it distinguishes between the states BChl'QAQn and UQ-10 from both the QA and QB sites, or the QB site only, was BChl2QAQB and permits the time resolution of electron performed (6) with slight modifications (18). transfer between QA and QB QA Replacement. The procedure of Gunner et al. (8, 18, 19) Chemicals. The quinones used in this work were obtained was used for the reconstitution of QA activity with quinones from several sources as follows: 1-methyl-9,10-anthraqui- other than the native UQ. All procedures were carried out in none (MeAQ) and 2,3-dimethyl-1,4-benzoquinone from J. 10 mM Tris HCI (pH 8.0) under aerobic conditions at 23 ± Malcolm Bruce, University of Manchester; the latter was 1°C. Detergent concentrations were maintained well below also obtained from Chang-An Yu, Oklahoma State Univer- the critical micelle concentration and sufficiently constant to sity; we gratefully acknowledge the compounds provided by have no significant effect on our results (for discussion, see our colleagues. 1,4-Benzoquinone (BQ); 1,4-naphthoqui- ref. 8). none; 9,10-anthraquinone (AQ); 9,10-phenanthraquinone; 3,5- Quinones chosen as QA replacements had in situ oxidation- di-tert-butyl-1,2-benzoquinone; and 2,3-dichloro-1,4-naph- reduction potential (Em) values lower then UQ-10 (18, 19) so thoquinone were purchased from Aldrich. When necessary, that the -AG 0 for electron transfer from a quinone at the QA these compounds were purified by recrystallization from site to a particular quinone at the QB site would be increased. petroleum ether (50-110'C). The purity of all quinones was Displacement of quinone in the QA site by a test quinone established by reverse-phase HPLC. in the QB site was minimized by choosing QA replacements The ferrous form of cyt c was prepared by reducing 1 ml of whose Kd values at the QA site were at least 60-fold tighter 10 mM cyt c (ferric form) (horse heart, type VI from Sigma) than the Kd values at the QA site for quinones chosen to with 400 ,ul offreshly prepared well-buffered 100 mM sodium reconstitute the QB site.
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