Oomycota and Zygomycota
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Fungi-Rhizopus
Characters of Fungi Some of the most important characters of fungi are as follows: 1. Occurrence 2. Thallus organization 3. Different forms of mycelium 4. Cell structure 5. Nutrition 6. Heterothallism and Homothallism 7. Reproduction 8. Classification of Fungi. 1. Occurrence: Fungi are cosmopolitan and occur in air, water soil and on plants and animals. They prefer to grow in warm and humid places. Hence, we keep food in the refrigerator to prevent bacterial and fungal infestation. 2. Thallus organization: Except some unicellular forms (e.g. yeasts, Synchytrium), the fungal body is a thallus called mycelium. The mycelium is an interwoven mass of thread-like hyphae (Sing, hypha). Hyphae may be septate (with cross wall) and aseptate (without cross wall). Some fungi are dimorphic that found as both unicellular and mycelial forms e.g. Candida albicans. 3. Different forms of mycelium: (a) Plectenchyma (fungal tissue): In a fungal mycelium, hyphae organized loosely or compactly woven to form a tissue called plectenchyma. It is two types: i. Prosenchyma or Prosoplectenchyma: In these fungal tissue hyphae are loosely interwoven lying more or less parallel to each other. ii. Pseudoparenchyma or paraplectenchyma: In these fungal tissue hyphae are compactly interwoven looking like a parenchyma in cross-section. (b) Sclerotia (Gr. Skleros=haid): These are hard dormant bodies consist of compact hyphae protected by external thickened hyphae. Each Sclerotium germinates into a mycelium, on return of favourable condition, e.g., Penicillium. (c) Rhizomorphs: They are root-like compactly interwoven hyphae with distinct growing tip. They help in absorption and perennation (to tide over the unfavourable periods), e.g., Armillaria mellea. -
Why Mushrooms Have Evolved to Be So Promiscuous: Insights from Evolutionary and Ecological Patterns
fungal biology reviews 29 (2015) 167e178 journal homepage: www.elsevier.com/locate/fbr Review Why mushrooms have evolved to be so promiscuous: Insights from evolutionary and ecological patterns Timothy Y. JAMES* Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA article info abstract Article history: Agaricomycetes, the mushrooms, are considered to have a promiscuous mating system, Received 27 May 2015 because most populations have a large number of mating types. This diversity of mating Received in revised form types ensures a high outcrossing efficiency, the probability of encountering a compatible 17 October 2015 mate when mating at random, because nearly every homokaryotic genotype is compatible Accepted 23 October 2015 with every other. Here I summarize the data from mating type surveys and genetic analysis of mating type loci and ask what evolutionary and ecological factors have promoted pro- Keywords: miscuity. Outcrossing efficiency is equally high in both bipolar and tetrapolar species Genomic conflict with a median value of 0.967 in Agaricomycetes. The sessile nature of the homokaryotic Homeodomain mycelium coupled with frequent long distance dispersal could account for selection favor- Outbreeding potential ing a high outcrossing efficiency as opportunities for choosing mates may be minimal. Pheromone receptor Consistent with a role of mating type in mediating cytoplasmic-nuclear genomic conflict, Agaricomycetes have evolved away from a haploid yeast phase towards hyphal fusions that display reciprocal nuclear migration after mating rather than cytoplasmic fusion. Importantly, the evolution of this mating behavior is precisely timed with the onset of diversification of mating type alleles at the pheromone/receptor mating type loci that are known to control reciprocal nuclear migration during mating. -
Characterization of Two Undescribed Mucoralean Species with Specific
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 26 March 2018 doi:10.20944/preprints201803.0204.v1 1 Article 2 Characterization of Two Undescribed Mucoralean 3 Species with Specific Habitats in Korea 4 Seo Hee Lee, Thuong T. T. Nguyen and Hyang Burm Lee* 5 Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture and Life Sciences, 6 Chonnam National University, Gwangju 61186, Korea; [email protected] (S.H.L.); 7 [email protected] (T.T.T.N.) 8 * Correspondence: [email protected]; Tel.: +82-(0)62-530-2136 9 10 Abstract: The order Mucorales, the largest in number of species within the Mucoromycotina, 11 comprises typically fast-growing saprotrophic fungi. During a study of the fungal diversity of 12 undiscovered taxa in Korea, two mucoralean strains, CNUFC-GWD3-9 and CNUFC-EGF1-4, were 13 isolated from specific habitats including freshwater and fecal samples, respectively, in Korea. The 14 strains were analyzed both for morphology and phylogeny based on the internal transcribed 15 spacer (ITS) and large subunit (LSU) of 28S ribosomal DNA regions. On the basis of their 16 morphological characteristics and sequence analyses, isolates CNUFC-GWD3-9 and CNUFC- 17 EGF1-4 were confirmed to be Gilbertella persicaria and Pilobolus crystallinus, respectively.To the 18 best of our knowledge, there are no published literature records of these two genera in Korea. 19 Keywords: Gilbertella persicaria; Pilobolus crystallinus; mucoralean fungi; phylogeny; morphology; 20 undiscovered taxa 21 22 1. Introduction 23 Previously, taxa of the former phylum Zygomycota were distributed among the phylum 24 Glomeromycota and four subphyla incertae sedis, including Mucoromycotina, Kickxellomycotina, 25 Zoopagomycotina, and Entomophthoromycotina [1]. -
Text Ch 31 Bullet Points: • Fungi – Our Sister Group! • Characteristics
Overview of Lecture: Fungi Read: Text ch 31 Bullet Points: V fungi – our sister group! V characteristics V fungusfocus.com V doctorfungus.com the biology of antifungal agents V new phylogeny (dang!!!) V microsporidia V chytrids V zygomycota – bread molds V glomeromycota - mycorrhizzae V ascomycota – yeasts & morrels V basidiomycota - mushrooms NATURE | REVIEW Emerging fungal threats to animal, plant and ecosystem health MC Fisher et al. Nature 484, 186–194 (12 April 2012) doi:10.1038/nature10947 The past two decades have seen an increasing number of virulent infectious diseases in natural populations and managed landscapes. In both animals and plants, an unprecedented number of fungal and fungal-like diseases have recently caused some of the most severe die-offs and extinctions ever witnessed in wild species, and are jeopardizing food security. Human activity is intensifying fungal disease dispersal by modifying natural environments and thus creating new opportunities for evolution. We argue that nascent fungal infections will cause increasing attrition of biodiversity, with wider implications for human and ecosystem health, unless steps are taken to tighten biosecurity worldwide. a. Disease alerts in the ProMED database for pathogenic fungi of animals and plants. c, Relative proportions of species extinction and/or extirpation events for major classes of infectious disease agents Fungi are the sister group of animals and part of the eukaryotic crown group that radiated about a billion years ago … ... a monophyletic group that shares some characters with animals such as chitinous structures {fungi have chitinous cell walls, unlike animals; arthropods secrete extracellular chitin sheets that are more like finger nails than cell walls} storage of glycogen, and mitochondrial UGA coding for tryptophan. -
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Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi Capella-Gutiérrez et al. Capella-Gutiérrez et al. BMC Biology 2012, 10:47 http://www.biomedcentral.com/1741-7007/10/47 (31 May 2012) Capella-Gutiérrez et al. BMC Biology 2012, 10:47 http://www.biomedcentral.com/1741-7007/10/47 RESEARCHARTICLE Open Access Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi Salvador Capella-Gutiérrez, Marina Marcet-Houben and Toni Gabaldón* Abstract Background: Microsporidia is one of the taxa that have experienced the most dramatic taxonomic reclassifications. Once thought to be among the earliest diverging eukaryotes, the fungal nature of this group of intracellular pathogens is now widely accepted. However, the specific position of microsporidia within the fungal tree of life is still debated. Due to the presence of accelerated evolutionary rates, phylogenetic analyses involving microsporidia are prone to methodological artifacts, such as long-branch attraction, especially when taxon sampling is limited. Results: Here we exploit the recent availability of six complete microsporidian genomes to re-assess the long- standing question of their phylogenetic position. We show that microsporidians have a similar low level of conservation of gene neighborhood with other groups of fungi when controlling for the confounding effects of recent segmental duplications. A combined analysis of thousands of gene trees supports a topology in which microsporidia is a sister group to all other sequenced fungi. Moreover, this topology received increased support when less informative trees were discarded. This position of microsporidia was also strongly supported based on the combined analysis of 53 concatenated genes, and was robust to filters controlling for rate heterogeneity, compositional bias, long branch attraction and heterotachy. -
Phylogenetic Classification of Life
Proc. Natl. Accad. Sci. USA Vol. 93, pp. 1071-1076, February 1996 Evolution Archaeal- eubacterial mergers in the origin of Eukarya: Phylogenetic classification of life (centriole-kinetosome DNA/Protoctista/kingdom classification/symbiogenesis/archaeprotist) LYNN MARGULIS Department of Biology, University of Massachusetts, Amherst, MA 01003-5810 Conitribluted by Lynnl Marglulis, September 15, 1995 ABSTRACT A symbiosis-based phylogeny leads to a con- these features evolved in their ancestors by inferable steps (4, sistent, useful classification system for all life. "Kingdoms" 20). rRNA gene sequences (Trichomonas, Coronympha, Giar- and "Domains" are replaced by biological names for the most dia; ref. 11) confirm these as descendants of anaerobic eu- inclusive taxa: Prokarya (bacteria) and Eukarya (symbiosis- karyotes that evolved prior to the "crown group" (12)-e.g., derived nucleated organisms). The earliest Eukarya, anaero- animals, fungi, or plants. bic mastigotes, hypothetically originated from permanent If eukaryotes began as motility symbioses between Ar- whole-cell fusion between members of Archaea (e.g., Thermo- chaea-e.g., Thermoplasma acidophilum-like and Eubacteria plasma-like organisms) and of Eubacteria (e.g., Spirochaeta- (Spirochaeta-, Spirosymplokos-, or Diplocalyx-like microbes; like organisms). Molecular biology, life-history, and fossil ref. 4) where cell-genetic integration led to the nucleus- record evidence support the reunification of bacteria as cytoskeletal system that defines eukaryotes (21)-then an Prokarya while -
Filling Gaps in the Microsporidian Tree: Rdna Phylogeny of Chytridiopsis Typographi (Microsporidia: Chytridiopsida)
Parasitology Research (2019) 118:169–180 https://doi.org/10.1007/s00436-018-6130-1 GENETICS, EVOLUTION, AND PHYLOGENY - ORIGINAL PAPER Filling gaps in the microsporidian tree: rDNA phylogeny of Chytridiopsis typographi (Microsporidia: Chytridiopsida) Daniele Corsaro1 & Claudia Wylezich2 & Danielle Venditti1 & Rolf Michel3 & Julia Walochnik4 & Rudolf Wegensteiner5 Received: 7 August 2018 /Accepted: 23 October 2018 /Published online: 12 November 2018 # Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract Microsporidia are intracellular eukaryotic parasites of animals, characterized by unusual morphological and genetic features. They can be divided in three main groups, the classical microsporidians presenting all the features of the phylum and two putative primitive groups, the chytridiopsids and metchnikovellids. Microsporidia originated from microsporidia-like organisms belong- ing to a lineage of chytrid-like endoparasites basal or sister to the Fungi. Genetic and genomic data are available for all members, except chytridiopsids. Herein, we filled this gap by obtaining the rDNA sequence (SSU-ITS-partial LSU) of Chytridiopsis typographi (Chytridiopsida), a parasite of bark beetles. Our rDNA molecular phylogenies indicate that Chytridiopsis branches earlier than metchnikovellids, commonly thought ancestral, forming the more basal lineage of the Microsporidia. Furthermore, our structural analyses showed that only classical microsporidians present 16S-like SSU rRNA and 5.8S/LSU rRNA gene fusion, whereas the standard eukaryote rRNA gene structure, although slightly reduced, is still preserved in the primitive microsporidians, including 18S-like SSU rRNA with conserved core helices, and ITS2-like separating 5.8S from LSU. Overall, our results are consistent with the scenario of an evolution from microsporidia-like rozellids to microsporidians, however suggesting for metchnikovellids a derived position, probably related to marine transition and adaptation to hyperparasitism. -
Classifications of Fungi
Chapter 24 | Fungi 675 Sexual Reproduction Sexual reproduction introduces genetic variation into a population of fungi. In fungi, sexual reproduction often occurs in response to adverse environmental conditions. During sexual reproduction, two mating types are produced. When both mating types are present in the same mycelium, it is called homothallic, or self-fertile. Heterothallic mycelia require two different, but compatible, mycelia to reproduce sexually. Although there are many variations in fungal sexual reproduction, all include the following three stages (Figure 24.8). First, during plasmogamy (literally, “marriage or union of cytoplasm”), two haploid cells fuse, leading to a dikaryotic stage where two haploid nuclei coexist in a single cell. During karyogamy (“nuclear marriage”), the haploid nuclei fuse to form a diploid zygote nucleus. Finally, meiosis takes place in the gametangia (singular, gametangium) organs, in which gametes of different mating types are generated. At this stage, spores are disseminated into the environment. Review the characteristics of fungi by visiting this interactive site (http://openstaxcollege.org/l/ fungi_kingdom) from Wisconsin-online. 24.2 | Classifications of Fungi By the end of this section, you will be able to do the following: • Identify fungi and place them into the five major phyla according to current classification • Describe each phylum in terms of major representative species and patterns of reproduction The kingdom Fungi contains five major phyla that were established according to their mode of sexual reproduction or using molecular data. Polyphyletic, unrelated fungi that reproduce without a sexual cycle, were once placed for convenience in a sixth group, the Deuteromycota, called a “form phylum,” because superficially they appeared to be similar. -
Fungi-Chapter 31 Refer to the Images of Life Cycles of Rhizopus, Morchella and Mushroom in Your Text Book and Lab Manual
Fungi-Chapter 31 Refer to the images of life cycles of Rhizopus, Morchella and Mushroom in your text book and lab manual. Chytrids Chytrids (phylum Chytridiomycota) are found in terrestrial, freshwater, and marine habitats including hydrothermal vents They can be decomposers, parasites, or mutualists Molecular evidence supports the hypothesis that chytrids diverged early in fungal evolution Chytrids are unique among fungi in having flagellated spores, called zoospores Zygomycetes The zygomycetes (phylum Zygomycota) exhibit great diversity of life histories They include fast-growing molds, parasites, and commensal symbionts The life cycle of black bread mold (Rhizopus stolonifer) is fairly typical of the phylum Its hyphae are coenocytic Asexual sporangia produce haploid spores The zygomycetes are named for their sexually produced zygosporangia Zygosporangia are the site of karyogamy and then meiosis Zygosporangia, which are resistant to freezing and drying, can survive unfavorable conditions Some zygomycetes, such as Pilobolus, can actually “aim” and shoot their sporangia toward bright light Glomeromycetes The glomeromycetes (phylum Glomeromycota) were once considered zygomycetes They are now classified in a separate clade Glomeromycetes form arbuscular mycorrhizae by growing into root cells but covered by host cell membrane. Ascomycetes Ascomycetes (phylum Ascomycota) live in marine, freshwater, and terrestrial habitats Ascomycetes produce sexual spores in saclike asci contained in fruiting bodies called ascocarps Ascomycetes are commonly -
The Life Cycles of Cryptogams 7
Acta Botanica Malacitana, 16(1): 5-18 Málaga, 1991 E IE CYCES O CYOGAMS Peter R. BELL SUMMARY: Meiosis and karyogamy are recognized as control points in the life cycle of cryptogams. The control of meiosis is evidently complex and in yeast, and by analogy in all cryptogams, involves progressive gene activation. The causes of the delay in meiosis in diplohaplontic and diplontic organisms, and the manner in which the block is removed remain to be discovered. There is accumulating evidence that cytoplasmic RNA plays an important role in meiotic division. Many features of tn are still obscure. The tendency to oogamy has provided the opportunity for the laying down of long-lived messenger RNA in the abundant cytoplasm of the female gamete. The sporophytic nature of the developing zygote can in this way be partially pre-determined. There is evidence that this is the situation in the ferns. Specific molecules (probably arabino-galacto-proteins) on the surface of the plasma membrane are likely to account both for gametic selection, and the readiness with which appropriate gametes fuse. The dikaryotic condition indicates that nuclear fusion is not inevitable following plasmogamy. The ultimate fusion of the nuclei may result from quite simple changes in the nuclear surface. Exposure of lipid, for example, would lead to fusion as a result of hydrophobic forces. Aberrations of cryptogamic life cycles are numerous. The nuclear relationships of many aberrant cycles are unknown. In general it appears that the maintenance of sporophytic growth depends upon the presence of at least two sets of chromosomes. Conversely the maintenance of gametophytic growth in cultures obtained aposporously appears to be impossible in the presence of four sets of chromosomes, or more. -
S41467-021-25308-W.Pdf
ARTICLE https://doi.org/10.1038/s41467-021-25308-w OPEN Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota ✉ ✉ Luis Javier Galindo 1 , Purificación López-García 1, Guifré Torruella1, Sergey Karpov2,3 & David Moreira 1 Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living fla- gellated stages (zoospores) remain poorly known and their phylogenetic position is often 1234567890():,; unresolved. Recently, rRNA gene phylogenetic analyses of two atypical parasitic fungi with amoeboid zoospores and long kinetosomes, the sanchytrids Amoeboradix gromovi and San- chytrium tribonematis, showed that they formed a monophyletic group without close affinity with known fungal clades. Here, we sequence single-cell genomes for both species to assess their phylogenetic position and evolution. Phylogenomic analyses using different protein datasets and a comprehensive taxon sampling result in an almost fully-resolved fungal tree, with Chytridiomycota as sister to all other fungi, and sanchytrids forming a well-supported, fast-evolving clade sister to Blastocladiomycota. Comparative genomic analyses across fungi and their allies (Holomycota) reveal an atypically reduced metabolic repertoire for sanchy- trids. We infer three main independent flagellum losses from the distribution of over 60 flagellum-specific proteins across Holomycota. Based on sanchytrids’ phylogenetic position and unique traits, we propose the designation of a novel phylum, Sanchytriomycota. In addition, our results indicate that most of the hyphal morphogenesis gene repertoire of multicellular fungi had already evolved in early holomycotan lineages. 1 Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France. 2 Zoological Institute, Russian Academy of Sciences, St. ✉ Petersburg, Russia. 3 St. -
Isolation of Mucorales from Biological Environment and Identification of Rhizopus Among the Isolates Using PCR- RFLP
Journal of Shahrekord University of Medical Sciences doi:10.34172/jsums.2019.17 2019;21(2):98-103 http://j.skums.ac.ir Original Article Isolation of Mucorales from biological environment and identification of Rhizopus among the isolates using PCR- RFLP Mahboobeh Madani1* ID , Mohammadali Zia2 ID 1Department of Microbiology, Falavarjan Branch, Islamic Azad University, Isfahan, Iran 2Department of Basic Science, (Khorasgan) Isfahan Branch, Islamic Azad University, Isfahan, Iran *Corresponding Author: Mahboobeh Madani, Tel: + 989134097629, Email: [email protected] Abstract Background and aims: Mucorales are fungi belonging to the category of Zygomycetes, found much in nature. Culture-based methods for clinical samples are often negative, difficult and time-consuming and mainly identify isolates to the genus level, and sometimes only as Mucorales. Therefore, applying fast and accurate diagnosis methods such as molecular approaches seems necessary. This study aims at isolating Mucorales for determination of Rhizopus genus between the isolates using molecular methods. Methods: In this descriptive observational study, a total of 500 samples were collected from air and different surfaces and inoculated on Sabouraud Dextrose Agar supplemented with chloramphenicol. Then, the fungi belonging to Mucorales were identified and their pure culture was provided. DNA extraction was done using extraction kit and the chloroform method. After amplification, the samples belonging to Mucorales were identified by observing 830 bp bands. For enzymatic digestion, enzyme BmgB1 was applied for identification of Rhizopus species by formation of 593 and 235 bp segments. Results: One hundred pure colonies belonging to Mucorales were identified using molecular methods and after enzymatic digestion, 21 isolates were determined as Rhizopus species.