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CURRICULUM VITAE Rodolphe ROUGERIE CURRICULUM VITAE Rodolphe ROUGERIE Né le 28 décembre 1974 à Rabat (Maroc) Nationalité française Fonction et adresse professionnelle : chercheur postdoctorant, INRA Orléans, Unité de Recherche en Zoologie Forestière (URZF - UR633), 2163 Avenue de la Pomme de Pin, CS40001 Ardon, 45075 Orléans Cedex 2, France. Adresse personnelle : 145 Route de Cléry, Bât.12, F-45370 Mézières Lez Cléry, France. Téléphone : Bureau : +33 (0)2 38 41 80 21 Mobile : +33 (0)6 84 50 85 79 Adresse électronique : [email protected] / [email protected] Page Web : page perso Expertise et activités de recherche Entomologiste de vocation et de formation, je suis titulaire d’un doctorat en systématique animale et véGétale du Muséum National d’Histoire Naturelle à Paris. Mon expertise taxonomique principale concerne l’ordre des Lépidoptères, mais mes études et collaborations m’ont conduit à travailler sur d’autres ordres d’insectes (Hyménoptères, Coléoptères) et d’autres Groupes d’invertébrés (Collembola, Oligochaeta). Mes travaux sont basés à la fois sur une approche de morphologie comparée fine (ex. microscopie électronique, morphométrie), avec les collections pour outil de travail principal, et sur une approche moléculaire de la délimitation des espèces et de la reconstruction de leur phylogénie. Un séjour postdoctoral de 4 ans dans le laboratoire de Paul Hebert à l’Université de Guelph au Canada m’a permis d’intéGrer un laboratoire de bioloGie moléculaire voué à la production à haut- débit de séquences d’ADN. J’ai dirigé plusieurs campaGnes de barcoding ADN (identification moléculaire basée sur un marqueur ADN standard) pour les Lépidoptères, mais j’ai aussi contribué au développement de cet outil dans d’autres Groupes, notamment pour la faune du sol (vers de terre, collemboles). Je suis coordinateur de la campagne de barcoding des Lépidoptères à l’échelle globale (http://www.lepbarcoding.org; près d’un million de spécimens échantillonnés et 800,000 codes barres ADN pour presque 80,000 espèces) et je diriGe plusieurs campaGnes taxonomiques (Saturniidae, Sphingidae - couverture mondiale de près de 90% des espèces décrites) ou géographique (faune européenne). Ce rôle m’a ainsi permis d’acquérir une expérience forte dans la supervision d’un réseau international de collaborateurs (taxonomistes professionnels et amateurs, curateurs de collections) pour la construction de librairies de référence Génétiques, mais aussi dans le développement de projets collaboratifs tirant profit des applications possibles de cet outil. Mes recherches les plus récentes consistent dans leur plus large part en des applications de l’intéGration de cet outil moléculaire, dans plusieurs domaines : (1) la taxonomie intégrative, consistant à combiner l’approche morpholoGique et un ou plusieurs marqueurs Génétiques pour 1 la discrimination d’espèces nouvelles ou confondues, parfois cryptiques ; (2) la phylogéographie et la biogéographie des espèces, en utilisant l’outil génétique pour revisiter les limites et les définitions d’espèces et mieux appréhender leur distribution et l’histoire micro- ou macro-évolutive qui en est à l’origine ; (3) l’écologie moléculaire, sous différents angles, comme le développement de protocoles d’analyse de contenus digestifs chez les guêpes parasitoïdes adultes et la reconstruction de réseaux trophiques hôtes/parasitoïdes, ou comme la caractérisation moléculaire de communautés d’insectes par des approches métaGénomiques de type métabarcoding, bénéficiant du haut-débit des nouvelles génération de séquençage (NGS). Ces applications ont démontré un réel potentiel de transformation de notre façon d’appréhender la biodiversité des insectes, d’une part en terme d’échelle avec les capacités haut-débit des NGS et la simplicité, la fiabilité et la rapidité des identifications moléculaires, mais aussi en levant le verrou taxonomique qui rendait presque impossible toute étude faunistique ou écologique ambitieuse par son échantillonnaGe taxonomique et GéoGraphique. Cette transformation s’applique par exemple pour mes travaux actuels sur les communautés de coléoptères saproxyliques en France (cette catéGorie fonctionnelle renferme 2500 espèces dans 71 familles et requiert donc une expertise taxonomique considérable, disséminée et difficilement accessible pour de larges volumes d’échantillons) au cours desquels je développe une approche métabarcodinG qui permet un chanGement d’échelle dans l’étude de ces insectes comme indicateurs forestiers ou pour le suivi d’espèces à caractère patrimonial. Parallèlement, j’applique des méthodes similaires à l’étude de faunes tropicales hyper-diverses et mal connues (en Afrique au Gabon et en Amérique du Sud en Amazonie, notamment au sein d’agroécosystèmes forestiers) pour documenter et comparer la structure et la composition de communautés de lépidoptères et produire rapidement des estimateurs de diversité (alpha-, beta- diversité) tout en construisant des librairies de référence aussi documentées que possible taxonomiquement Grâce aux efforts d’un réseau international de taxonomistes. Mots-clés : entomoloGie, lépidoptères, systématique, taxonomie intéGrative, phyloGénie, biogéographie, phylogéographie, identification moléculaire des espèces, DNA barcodinG, DNA métabarcodinG, NGS, écoloGie moléculaire, écoloGie des communautés, inventaires faunistiques, diversité tropicale, indicateurs écologiques Formation académique - 2005 - Doctorat du Muséum National d’Histoire Naturelle, Paris - mention très honorable et félicitations du jury. Titre du mémoire : « Phylogénie et biogéographie des Saturniinae (Lepidoptera, Saturniidae) : approche morphologique et moléculaire. » Directeur de thèse : Prof. Joël Minet (MNHN) - 2000 - DEA de Systématique Animale et Végétale, MNHN, Paris - mention bien, major de promotion. Titre du mémoire : « Parapatrie, zones d’hybridation et radiation évolutive des Neanurinae du genre Deutonura (Collemboles) en Catalogne. » Superviseur : Prof. Louis DeharvenG (Université Paul Sabatier, Toulouse – actuellement au MNHN) - 1997 - Maîtrise de Biologie des Populations et des Ecosystèmes, Université Paul Sabatier, Toulouse 2 Expérience de recherche postdoctorale (2006-2014) - Depuis 02/2013 : Chercheur postdoctorant à l’INRA d’Orléans (URZF) dans le cadre du projet PASSIFOR (Proposition d’amélioration du suivi de la biodiversité forestière – Coord. Guy Landmann, GIP ECOFOR) ; superviseur : Dr. Carlos Lopez-Vaamonde - De 09/2010 à 01/2013 : Postdoctorant puis chercheur associé au laboratoire ECODIV de l’université de Rouen ; directeur : Prof. Thibaud Decaëns - de 08/2006 à 08/2010 : Chercheur postdoctorant au Biodiversity Institute of Ontario et Canadian Centre for DNA Barcoding, Université de Guelph, Ontario, Canada ; superviseur : prof. Paul D. N. Hebert Expérience d’enseignement - Intervenant invité : octobre 2011, Université de Rouen - création et enseiGnement d’un cours introductif au DNA barcodinG et à ses applications (4h, niveau L1) - Intervenant invité : mars 2011/2013, ECOTROP, école de terrain en écologie tropicale, La Lopé, Gabon (UE du Master 2 Environnement, Sol, Eau, Biodiversité (ESEB), parcours BIODIV) - 2 semaines d’enseiGnements quotidiens en salle (cours, TD) et sur le terrain (TP) : échantillonnaGe entomoloGique, DNA barcodinG (échantillonnaGe, analyse de données, principes et applications, niveau M1/M2) - ATER année universitaire 2003/2004 et 2004/2005, Université de Rouen - enseiGnements pratiques et théoriques en : (i) Licence, bioloGie animale (36h), botanique et biologie végétale (150h), écologie du sol (30h); (ii) Master : systématique et bioGéoGraphie (30h) Dissémination de la recherche - Publications : 38 articles dans des revues internationales à comité de lecture ; 12 autres articles scientifiques dans des revues spécialisées ; 2 livres grand-public - Citations (Google Scholar): h-index : 15, nombre de citations : 580, papier le plus cité : 114 citations (Janzen et al., 2009) - Séminaires scientifiques : 17 présentations (universités, instituts, sociétés savantes), 1 séminaire en liGne (Société Française d’Ecologie) - Conférences internationales : 91 communications (35 en 1er auteur : 25 orales (5 invitées), 10 posters) - Rôle éditorial : reviewer pour 13 journaux scientifiques internationaux ; membre du bureau éditorial pour le Bulletin de la Société EntomoloGique de France Encadrement d’étudiants - Doctorants : supervision d’un chapitre des thèses de John J. Wilson [Université de Guelph, Ontario, Canada, 2009-2010], L. Anderson Ribeiro-Leite [Université fédérale du Paraná, Curitiba, Brésil, 2010-2012], et Mauricio M. Zenker [Université fédérale du Paraná, Curitiba, Brésil, 2011-2013] - Master 2ème année : superviseur de Benoît Richard [Université de Rouen, 2008], Olivier Bouteleux [Université d’Orléans, 2012], Sylvain Delabie [Université de Rouen, en cours] et HuGhes BikanG [Université des Sciences et Techniques de Masuku (USTM), Franceville, Gabon, en cours] 3 - Master 1ère année : superviseur de HuGhes BikanG et Franck Mounioko [USTM, Gabon, 2013] Recherche de financements - 12 projets financés comme PI ou co-PI entre 1996 et 2013 pour un total d’environ 86K€ - Implication dans 12 projets de recherche déposés en 2013-2014 - Projets en cours d’évaluation (PI ou co-PI) : 3 projets dont 1 projet ANR en phase d’écriture d’une proposition détaillée Récompenses Sotavalta lecture medal (2011 - Finnish Society of Lepidopterology) Activités au sein de sociétés savantes (Histoire naturelle, écoloGie, entomoloGie, systématique) - Membre de 7 sociétés françaises et internationales
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