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A Method for Digital Color Analysis of Spalted Wood Using Scion Image Software
Materials 2009, 2, 62-75; doi:10.3390/ma2010062 OPEN ACCESS materials ISSN 1996-1944 www.mdpi.com/journal/materials Article A Method for Digital Color Analysis of Spalted Wood Using Scion Image Software Sara C. Robinson *, Peter E. Laks and Ethan J. Turnquist Michigan Technological University / 1400 Townsend Dr., Houghton, MI 49931, USA; E-Mails: [email protected] (P.L.); [email protected] (E.T.) * Author to whom correspondence should be addressed; E-Mail: [email protected] Received: 9 January 2009; in revised form: 31 January 2009 / Accepted: 13 February 2009 / Published: 16 February 2009 Abstract: Color analysis of spalted wood surfaces requires a non-subjective, repeatable method for determining percent of pigmentation on the wood surface. Previously published methods used human visual perception with a square grid overlay to determine the percent of surface pigmentation. Our new method uses Scion Image©, a graphical software program used for grayscale and color analysis, to separate fungal pigments from the wood background. These human interface processes render the wood block into HSV (hue, saturation, value, within the RGB color space), allowing subtle and drastic color changes to be visualized, selected and analyzed by the software. Analysis with Scion Image© allows for a faster, less subjective, and easily repeatable procedure that is superior to simple human visual perception. Keywords: Spalting; Scion Image; color analysis. 1. Introduction Spalting is a natural coloration process in which fungi with pigmented hyphae colonize wood in a high enough concentration for a visual, macroscopic color change to occur. Zone lines, areas of melanized hyphal tissue or pseudosclerotial plates, and the bleaching effect caused by many white rot fungi are also considered to be spalting [1]. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Wood Species and Culture Age Affect Zone Line Production of Xylaria Polymorpha
18 The Open Mycology Journal, 2010, 4, 18-21 Open Access Wood Species and Culture Age Affect Zone Line Production of Xylaria polymorpha Sara C. Robinson* and Peter E. Laks Michigan Technological University, 1400 Townsend Drive, Hougton, MI 49931-1295, USA Abstract: Three pure cultures of Xylaria polymorpha were isolated from fruiting bodies at yearly intervals over two years and maintained on 2% malt agar plates at room temperature. Immediately after isolation of the third culture, the cultures were inoculated onto sugar maple (Acer saccharum), aspen (Populus tremuloides), birch (Betula alleghaniensis), and basswood (Tilia americana) 14 mm cubes and incubated for 10 weeks in jars containing vermiculite. More zone lines were produced on aspen and sugar maple than on yellow birch or basswood. Increasing culture age generally caused a decrease in zone line production; however the effect was only statistically significant in sugar maple. The results indicate that aspen is preferable for zone line production with X. polymorpha, as both external and internal zone lines occur on this wood species, and zone line production remains high despite the age of the culture. Keywords: Spalting, Xylaria polymorpha, zone lines. INTRODUCTION As commercial interest in spalted wood increases, it is necessary to understand not just which wood species are Zone lines can be produced by a wide variety of basidio- most quickly decayed by a specific fungus, but to discover mycete fungi and some ascomycete fungi. They often appear which wood species are most quickly spalted, preferably macroscopically as thin, dark lines that delineate patches of without an associated increase in decay. -
Spalt Your Own Lumber Learn How Wood and Fungi Interact to Create Your Own Beautiful Boards by Sara Robinson
Spalt Your Own Lumber Learn how wood and fungi interact to create your own beautiful boards by Sara Robinson Any product associated with rot and decay is likely to have an image problem. Spalted wood is no exception: Youʼre more likely to find it in your firewood pile than in your local lumberyard. However, a growing number of woodworkers are looking past the decay and discovering the beauties of spalted wood (see health note below). These include colors not normally found in wood, contrasting light and dark colors adjacent to each other, and most notably, brown and black lines running through the wood. Unique to spalted wood, these lines can range from one or two running down a board to something resembling contour lines drawn by a drunken mapmaker. MORE ON SPALTING Read Robinsonʼs new column on spalting in the woodworking life blog Meet the fungi that create spalted wood and learn how it occurs in the wild Learn how to work with spalted wood Find out how to make your own spalted wood Download Robinsonʼs original article, in printer-friendly format, from FWW #191 Best of all, like fingerprints, each board of spalted wood is unique. It is this diversity that has drawn me to study spalting academically and to use it as a wood turner. Iʼll talk about how you can try to re-create this process under controlled conditions at home. DIY spalting Spalting wood is a lot like growing plants. With the right amounts of food, water, and heat, you should end up with good results, but success is by no means guaranteed. -
Ascomycete Fungi Species List
Ascomycete Fungi Species List Higher Classification1 Kingdom: Fungi, Phylum: Ascomycota Class (C:), Order (O:) and Family (F:) Scientific Name1 English Name(s)2 C: Geoglossomycetes (Earth Tongues) O: Geoglossales F: Geoglossaceae Trichoglossum hirsutum Black Earth Tongue C: Leotiomycetes O: Helotiales F: Bulgariaceae Bulgaria inquinans Black Bulgar F: Helotiaceae Chlorociboria aeruginascens Green Elfcup, Green Wood Cup, Green Stain Fungus F: Leotiaceae Leotia lubrica Jellybaby F: Vibrisseaceae Vibrissea truncorum O: Pezizales F: Helvellaceae Gyromitra infula Hooded False Morel, Elfin Saddle Helvella macropus Felt Saddle Fungus Helvella spp. Elfin Saddles F: Pyronemataceae Cheilymenia theleboloides Scutellinia scutellata Eyelash Cup F: Sarcoscyphaceae Cookeina speciosa Cookeina venezuelae C: Sordariomycetes O: Hypocreales F: Clavicipitaceae Ophiocordyceps melolonthae O: Xylariales F: Xylariaceae Daldinia sp. Xylaria globosa Xylaria hypoxylon Candlestick Fungus, Candlesnuff Fungus, Stag's Horn Fungus Xylaria polymorpha Dead Man's Fingers Xylaria spp. Xylocoremium sp. Page 1 of 2 Cloudbridge Nature Reserve, Costa Rica Last Updated: February 3, 2017 Ascomycete Fungi Species List NOTES: Short-forms: sp. = one species of the given genus identified; spp. = more than one of species of the given genus identified 1, Classification and scientific names based on current classifications as found on MycoBank (www.mycobank.org) 2, English names are not standardized for fungi and the English names provided are not considered the definitive names for the given species. English names were gathered from a variety of sources including mushroom identification books and various fungi related websites. Contributors: Major Contributor – Baptiste Saunier. Other Contributors – Ranzeth Gómez Navarro. Page 2 of 2 Cloudbridge Nature Reserve, Costa Rica Last Updated: February 3, 2017 . -
Spalt Your Own Since the Question of Spalting Comes up Time and Again, I Will Share a Description of What I Use When the Natural
Spalt Your Own A Recipe for Creating Spalted Wood Since the question of spalting comes up time and again, I will share a description of what I use when the natural ingredients aren't available. A "brew" of some kind is required when the conditions for natural spalting do not exist. There are a lot of ways to induce spalting. Like everything else in woodturning, nothing is "tried and true". You will have to experiment. Some wood spalts. Some wood just rots. Others (cherry and walnut) don't do much of anything. This spalting brew has everything necessary for almost anything to grow in any wood that wants to spalt. Use it on maple, birch, beech, sweetgum, oak, alder, holly, pecan and just any hard wood you wish. • 1-qt water • 2-scoops Miracle grow • 2-cans beer, drink one and put th other in the spalting brew. • 1-qt horse manure, doesn't have to be fresh, but the ammonia odor should still be present when it gets wet. • 1-qt dried oak leaves There is nothing sacred about any of the ingredients as long as we have the nitrogen, organics, ammonia, sugar, malt extracts, tannins, and leaf molds - everything necessary for all kinds of things to grow in the wood. The only additional ingredient is heat. You can use packaged steer manure from the garden store and add a half cup of household ammonia. Don't use the sudsing type because it contains detergents which will kill the growth. All leaves contain some amount of tannins, oak leaves contain more than others. -
Preliminary Examination of the Toxicity of Spalting Fungal Pigments: a Comparison Between Extraction Methods
Journal of Fungi Article Preliminary Examination of the Toxicity of Spalting Fungal Pigments: A Comparison between Extraction Methods Badria H. Almurshidi 1, R.C. Van Court 1 , Sarath M. Vega Gutierrez 1 , Stacey Harper 2 , Bryan Harper 2 and Seri C. Robinson 1,* 1 Department of Wood Science, Oregon State University, Corvallis, OR 97333, USA; [email protected] (B.H.A.); [email protected] (R.C.V.C.); [email protected] (S.M.V.G.) 2 Department of Toxicology, Oregon State University, Corvallis, OR 97331, USA; [email protected] (S.H.); [email protected] (B.H.) * Correspondence: [email protected] Abstract: Spalting fungal pigments have shown potential in technologies ranging from green energy generation to natural colorants. However, their unknown toxicity has been a barrier to industrial adoption. In order to gain an understanding of the safety of the pigments, zebrafish embryos were exposed to multiple forms of liquid media and solvent-extracted pigments with concentrations of purified pigment ranging from 0 to 50 mM from Chlorociboria aeruginosa, Chlorociboria aeruginascens, and Scytalidium cuboideum. Purified xylindein from Chlorociboria sp. did not show toxicity at any tested concentration, while the red pigment dramada from S. cuboideum was only associated with significant toxicity above 23.2 uM. However, liquid cultures and pigment extracted into dichloromethane (DCM) showed toxicity, suggesting the co-production of bioactive secondary metabolites. Future research on purification and the bioavailability of the red dramada pigment will be important to identify Citation: Almurshidi, B.H.; Van appropriate use; however, purified forms of the blue-green pigment xylindein are likely safe for use Court, R.C.; Vega Gutierrez, S.M.; across industries. -
Wood Colorization Through Pressure Treating: the Potential of Extracted Colorants from Spalting Fungi As a Replacement for Woodworkers’ Aniline Dyes
Materials 2014, 7, 5427-5437; doi:10.3390/ma7085427 OPEN ACCESS materials ISSN 1996-1944 www.mdpi.com/journal/materials Article Wood Colorization through Pressure Treating: The Potential of Extracted Colorants from Spalting Fungi as a Replacement for Woodworkers’ Aniline Dyes Sara C. Robinson 1,*, Eric Hinsch 1, Genevieve Weber 1, Kristina Leipus 2 and Daniel Cerney 2 1 Department of Wood Science & Engineering, 119 Richardson Hall, Oregon State University, Corvallis, OR 97331, USA; E-Mails: [email protected] (E.H.); [email protected] (G.W.) 2 School of Forest Resources and Environmental Science, Michigan Technological University, 1400 Townsend Dr., Houghton, MI 49931, USA; E-Mails: [email protected] (K.L.); [email protected] (D.C.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +1-541-737-4233. Received: 8 May 2014; in revised form: 18 June 2014 / Accepted: 17 July 2014 / Published: 24 July 2014 Abstract: The extracellular colorants produced by Chlorociboria aeruginosa, Scytalidium cuboideum, and Scytalidium ganodermophthorum, three commonly utilized spalting fungi, were tested against a standard woodworker’s aniline dye to determine if the fungal colorants could be utilized in an effort to find a naturally occurring replacement for the synthetic dye. Fungal colorants were delivered in two methods within a pressure treater—the first through solubilization of extracted colorants in dichloromethane, and the second via liquid culture consisting of water, malt, and the actively growing fungus. Visual external evaluation of the wood test blocks showed complete surface coloration of all wood species with all colorants, with the exception of the green colorant (xylindein) from C. -
Utilizing Pigment-Producing Fungi to Add Commercial Value to American Beech (Fagus Grandifolia)
Appl Microbiol Biotechnol (2012) 93:1041–1048 DOI 10.1007/s00253-011-3576-9 BIOTECHNOLOGICAL PRODUCTS AND PROCESS ENGINEERING Utilizing pigment-producing fungi to add commercial value to American beech (Fagus grandifolia) Sara C. Robinson & Daniela Tudor & Paul A. Cooper Received: 20 April 2011 /Revised: 15 August 2011 /Accepted: 8 September 2011 /Published online: 20 September 2011 # Springer-Verlag 2011 Abstract American beech (Fagus grandifolia) is an abun- Introduction dant, underutilized tree in certain areas of North America, and methods to increase its market value are of consider- Pigments produced by fungi are routinely utilized as colorants able interest. This research utilized pigment-producing for both foodstuffs and materials. Some of the more fungi to induce color in American beech to potentially prominently utilized fungal pigments come from the water- establish its use as a decorative wood. Wood samples were soluble orange/red pigments produced by Monascus spp., inoculated with Trametes versicolor, Xylaria polymorpha, frequently utilized in rice wines in eastern countries (De Inonotus hispidus, and Arthrographis cuboidea to induce Carvalho et al. 2003). Pigments from Monascus purpureus fungal pigmentation. Black pigmentation (T. versicolor, X. Piedallu are used in wool dying (De Santis et al. 2005), and polymorpha, I. hispidus) was sporadic, occurred primarily an anthraquinone pigment isolated from Penicillium oxalicum on the surfaces of the heartwood, but not internally. Pink Currie & Thom is currently being developed for use as a pigmentation (A. cuboidea) occurred throughout all of the ‘natural’ food additive that may have some anticancer effects tested beech samples, but was difficult to see in the (Dufossé et al. -
Wood Decay by Chlorociboria Aeruginascens (Nyl.) Kanouse (Helotiales, Leotiaceae) and Associated Basidiomycete Fungi
International Biodeterioration & Biodegradation 105 (2015) 239e244 Contents lists available at ScienceDirect International Biodeterioration & Biodegradation journal homepage: www.elsevier.com/locate/ibiod Wood decay by Chlorociboria aeruginascens (Nyl.) Kanouse (Helotiales, Leotiaceae) and associated basidiomycete fungi * Dana L. Richter a, Jessie A. Glaeser b, a School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI 49931, USA b USDA Forest Service, Center for Forest Mycology Research, Forest Products Laboratory, One Gifford Pinchot Dr., Madison, WI 53726, USA article info abstract Article history: Two isolates of Chlorociboria aeruginascens (Nyl.) Kanouse incubated axenically on aspen wood blocks Received 1 July 2015 resulted in 18% and 32% mass loss after 134 wks (2 yrs 8 mo). Aspen wood decayed by C. aeruginascens Received in revised form contained cavities in the S2 layer of the secondary cell wall, similar to Type I soft rot attack, as well as 14 September 2015 erosion troughs and overall thinning and erosion of wood cell walls, resembling decay by Type II soft rot Accepted 14 September 2015 fungi. Using a selective medium, basidiomycete fungi were isolated from 9 of 17 samples of wood from a Available online xxx variety of tree species colonized and stained by Chlorociboria sp. (putatively C. aeruginascens) in a mixed hardwood forest from northern North America. Basidiomycete fungi were identified by ITS sequencing Keywords: Chlorociboria aeruginascens and cultural tests and were shown to be predominantly species of common white rot fungi. In axenic e Green stain decay tests with aspen blocks, basidiomycete isolates caused mass losses in the range of 10% 50% after Wood decay 26 wks incubation. -
Toxicity of Fungal Pigments from Chlorociboria Spp. and Scytalidium Spp
AN ABSTRACT OF THE THESIS OF Badria H. Almurshidi for the degree of Master of Science in Wood Science presented on June 4, 2015 Title: Toxicity of Fungal Pigments from Chlorociboria spp. and Scytalidium spp. Abstract Approved: Sara C. Robinson Commercial methodologies for producing fungal pigments are of worldwide interest due to the desire to move away from synthetic dyes. Chlorociboria species and Scytalidium species have been reported to produce sufficient yields of pigments for commercial production and have attracted special attention because of their use in spalted wood applications. However, there are few data about the toxicity of these pigments on humans or the ecosystem. The main objective of this thesis was to examine fungal pigment mixture toxicity and its effects on living organisms using a zebrafish embryo acute toxicity bioassay. Pigment mixtures from wood agar cultures and liquid malt media were screened. There were significant adverse effects from both the DCM-extracted pigment and the liquid malt medium although there was variability in the toxicity endpoints. The results from this study suggest that all dichloromethane (DCM) pigment extracts followed a dose/ response curve and caused higher mortality in higher concentrations after a short time of exposure except the DCM-red pigment extract which follow a non monotonic dose/response curve. The response from both DCM pigment extracts and liquid malt pigment depended on the solubility and bioavailability factors in the water. Overall, the results indicate that the pigments extracted from these fungi are likely toxic to humans. However, as no completely purified compounds were tested, it is possible that other secondary fungal metabolites and wood extractives that were also retrieved during the extraction process might also have played a role in the toxicity. -
Evolution of Helotialean Fungi (Leotiomycetes, Pezizomycotina): a Nuclear Rdna Phylogeny
Molecular Phylogenetics and Evolution 41 (2006) 295–312 www.elsevier.com/locate/ympev Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): A nuclear rDNA phylogeny Zheng Wang a,¤, Manfred Binder a, Conrad L. Schoch b, Peter R. Johnston c, Joseph W. Spatafora b, David S. Hibbett a a Department of Biology, Clark University, 950 Main Street, Worcester, MA 01610, USA b Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA c Herbarium PDD, Landcare Research, Private bag 92170, Auckland, New Zealand Received 5 December 2005; revised 21 April 2006; accepted 24 May 2006 Available online 3 June 2006 Abstract The highly divergent characters of morphology, ecology, and biology in the Helotiales make it one of the most problematic groups in traditional classiWcation and molecular phylogeny. Sequences of three rDNA regions, SSU, LSU, and 5.8S rDNA, were generated for 50 helotialean fungi, representing 11 out of 13 families in the current classiWcation. Data sets with diVerent compositions were assembled, and parsimony and Bayesian analyses were performed. The phylogenetic distribution of lifestyle and ecological factors was assessed. Plant endophytism is distributed across multiple clades in the Leotiomycetes. Our results suggest that (1) the inclusion of LSU rDNA and a wider taxon sampling greatly improves resolution of the Helotiales phylogeny, however, the usefulness of rDNA in resolving the deep relationships within the Leotiomycetes is limited; (2) a new class Geoglossomycetes, including Geoglossum, Trichoglossum, and Sarcoleo- tia, is the basal lineage of the Leotiomyceta; (3) the Leotiomycetes, including the Helotiales, Erysiphales, Cyttariales, Rhytismatales, and Myxotrichaceae, is monophyletic; and (4) nine clades can be recognized within the Helotiales.