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The Influence of Probiotics on the Firmicutes/Bacteroidetes Ratio In
microorganisms Review The Influence of Probiotics on the Firmicutes/Bacteroidetes Ratio in the Treatment of Obesity and Inflammatory Bowel disease Spase Stojanov 1,2, Aleš Berlec 1,2 and Borut Štrukelj 1,2,* 1 Faculty of Pharmacy, University of Ljubljana, SI-1000 Ljubljana, Slovenia; [email protected] (S.S.); [email protected] (A.B.) 2 Department of Biotechnology, Jožef Stefan Institute, SI-1000 Ljubljana, Slovenia * Correspondence: borut.strukelj@ffa.uni-lj.si Received: 16 September 2020; Accepted: 31 October 2020; Published: 1 November 2020 Abstract: The two most important bacterial phyla in the gastrointestinal tract, Firmicutes and Bacteroidetes, have gained much attention in recent years. The Firmicutes/Bacteroidetes (F/B) ratio is widely accepted to have an important influence in maintaining normal intestinal homeostasis. Increased or decreased F/B ratio is regarded as dysbiosis, whereby the former is usually observed with obesity, and the latter with inflammatory bowel disease (IBD). Probiotics as live microorganisms can confer health benefits to the host when administered in adequate amounts. There is considerable evidence of their nutritional and immunosuppressive properties including reports that elucidate the association of probiotics with the F/B ratio, obesity, and IBD. Orally administered probiotics can contribute to the restoration of dysbiotic microbiota and to the prevention of obesity or IBD. However, as the effects of different probiotics on the F/B ratio differ, selecting the appropriate species or mixture is crucial. The most commonly tested probiotics for modifying the F/B ratio and treating obesity and IBD are from the genus Lactobacillus. In this paper, we review the effects of probiotics on the F/B ratio that lead to weight loss or immunosuppression. -
A Taxonomic Note on the Genus Lactobacillus
Taxonomic Description template 1 A taxonomic note on the genus Lactobacillus: 2 Description of 23 novel genera, emended description 3 of the genus Lactobacillus Beijerinck 1901, and union 4 of Lactobacillaceae and Leuconostocaceae 5 Jinshui Zheng1, $, Stijn Wittouck2, $, Elisa Salvetti3, $, Charles M.A.P. Franz4, Hugh M.B. Harris5, Paola 6 Mattarelli6, Paul W. O’Toole5, Bruno Pot7, Peter Vandamme8, Jens Walter9, 10, Koichi Watanabe11, 12, 7 Sander Wuyts2, Giovanna E. Felis3, #*, Michael G. Gänzle9, 13#*, Sarah Lebeer2 # 8 '© [Jinshui Zheng, Stijn Wittouck, Elisa Salvetti, Charles M.A.P. Franz, Hugh M.B. Harris, Paola 9 Mattarelli, Paul W. O’Toole, Bruno Pot, Peter Vandamme, Jens Walter, Koichi Watanabe, Sander 10 Wuyts, Giovanna E. Felis, Michael G. Gänzle, Sarah Lebeer]. 11 The definitive peer reviewed, edited version of this article is published in International Journal of 12 Systematic and Evolutionary Microbiology, https://doi.org/10.1099/ijsem.0.004107 13 1Huazhong Agricultural University, State Key Laboratory of Agricultural Microbiology, Hubei Key 14 Laboratory of Agricultural Bioinformatics, Wuhan, Hubei, P.R. China. 15 2Research Group Environmental Ecology and Applied Microbiology, Department of Bioscience 16 Engineering, University of Antwerp, Antwerp, Belgium 17 3 Dept. of Biotechnology, University of Verona, Verona, Italy 18 4 Max Rubner‐Institut, Department of Microbiology and Biotechnology, Kiel, Germany 19 5 School of Microbiology & APC Microbiome Ireland, University College Cork, Co. Cork, Ireland 20 6 University of Bologna, Dept. of Agricultural and Food Sciences, Bologna, Italy 21 7 Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Vrije Universiteit 22 Brussel, Brussels, Belgium 23 8 Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Ghent, 24 Belgium 25 9 Department of Agricultural, Food & Nutritional Science, University of Alberta, Edmonton, Canada 26 10 Department of Biological Sciences, University of Alberta, Edmonton, Canada 27 11 National Taiwan University, Dept. -
Changes in the Bacterial Diversity of Human Milk During Late Lactation Period (Weeks 21 to 48)
foods Communication Changes in the Bacterial Diversity of Human Milk during Late Lactation Period (Weeks 21 to 48) Wendy Marin-Gómez ,Ma José Grande, Rubén Pérez-Pulido, Antonio Galvez * and Rosario Lucas Microbiology Division, Department of Health Sciences, Faculty of Experimental Sciences, University of Jaén, 23071 Jaén, Spain; [email protected] (W.M.-G.); [email protected] (M.J.G.); [email protected] (R.P.-P.); [email protected] (R.L.) * Correspondence: [email protected]; Tel.: +34-953-212160 Received: 19 July 2020; Accepted: 25 August 2020; Published: 27 August 2020 Abstract: Breast milk from a single mother was collected during a 28-week lactation period. Bacterial diversity was studied by amplicon sequencing analysis of the V3-V4 variable region of the 16S rRNA gene. Firmicutes and Proteobacteria were the main phyla detected in the milk samples, followed by Actinobacteria and Bacteroidetes. The proportion of Firmicutes to Proteobacteria changed considerably depending on the sampling week. A total of 411 genera or higher taxons were detected in the set of samples. Genus Streptococcus was detected during the 28-week sampling period, at relative abundances between 2.0% and 68.8%, and it was the most abundant group in 14 of the samples. Carnobacterium and Lactobacillus had low relative abundances. At the genus level, bacterial diversity changed considerably at certain weeks within the studied period. The weeks or periods with lowest relative abundance of Streptococcus had more diverse bacterial compositions including genera belonging to Proteobacteria that were poorly represented in the rest of the samples. Keywords: breast milk; biodiversity; lactic acid bacteria; late lactation; metagenomics 1. -
The Human Milk Microbiome and Factors Influencing Its
1 THE HUMAN MILK MICROBIOME AND FACTORS INFLUENCING ITS 2 COMPOSITION AND ACTIVITY 3 4 5 Carlos Gomez-Gallego, Ph. D. ([email protected])1; Izaskun Garcia-Mantrana, Ph. D. 6 ([email protected])2, Seppo Salminen, Prof. Ph. D. ([email protected])1, María Carmen 7 Collado, Ph. D. ([email protected])1,2,* 8 9 1. Functional Foods Forum, Faculty of Medicine, University of Turku, Itäinen Pitkäkatu 4 A, 10 20014, Turku, Finland. Phone: +358 2 333 6821. 11 2. Institute of Agrochemistry and Food Technology, National Research Council (IATA- 12 CSIC), Department of Biotechnology. Valencia, Spain. Phone: +34 96 390 00 22 13 14 15 *To whom correspondence should be addressed. 16 -IATA-CSIC, Av. Agustin Escardino 7, 49860, Paterna, Valencia, Spain. Tel. +34 963900022; 17 E-mail: [email protected] 18 19 20 21 22 23 24 25 26 27 1 1 SUMMARY 2 Beyond its nutritional aspects, human milk contains several bioactive compounds, such as 3 microbes, oligosaccharides, and other substances, which are involved in host-microbe 4 interactions and have a key role in infant health. New techniques have increased our 5 understanding of milk microbiota composition, but little data on the activity of bioactive 6 compounds and their biological role in infants is available. While the human milk microbiome 7 may be influenced by specific factors, including genetics, maternal health and nutrition, mode of 8 delivery, breastfeeding, lactation stage, and geographic location, the impact of these factors on 9 the infant microbiome is not yet known. This article gives an overview of milk microbiota 10 composition and activity, including factors influencing microbial composition and their 11 potential biological relevance on infants' future health. -
Characterization of Weissella Koreensis SK Isolated From
microorganisms Article Characterization of Weissella koreensis SK Isolated from Kimchi Fermented at Low Temperature ◦ (around 0 C) Based on Complete Genome Sequence and Corresponding Phenotype So Yeong Mun and Hae Choon Chang * Department of Food and Nutrition, Kimchi Research Center, Chosun University, 309 Pilmun-daero, Dong-gu, Gwangju 61452, Korea; [email protected] * Correspondence: [email protected] Received: 17 June 2020; Accepted: 28 July 2020; Published: 29 July 2020 Abstract: This study identified lactic acid bacteria (LAB) that play a major role in kimchi fermented at low temperature, and investigated the safety and functionality of the LAB via biologic and genomic analyses for its potential use as a starter culture or probiotic. Fifty LAB were isolated from 45 kimchi samples fermented at 1.5~0 C for 2~3 months. Weissella koreensis strains were determined as the − ◦ dominant LAB in all kimchi samples. One strain, W. koreensis SK, was selected and its phenotypic and genomic features characterized. The complete genome of W. koreensis SK contains one circular chromosome and plasmid. W. koreensis SK grew well under mesophilic and psychrophilic conditions. W. koreensis SK was found to ferment several carbohydrates and utilize an alternative carbon source, the amino acid arginine, to obtain energy. Supplementation with arginine improved cell growth and resulted in high production of ornithine. The arginine deiminase pathway of W. koreensis SK was encoded in a cluster of four genes (arcA-arcB-arcD-arcC). No virulence traits were identified in the genomic and phenotypic analyses. The results indicate that W. koreensis SK may be a promising starter culture for fermented vegetables or fruits at low temperature as well as a probiotic candidate. -
GRAS NOTICE 820, Lactobacillus Fermentum CECT5716
GRAS Notice (GRN) No. 820 https://www.fda.gov/food/generally-recognized-safe-gras/gras-notice-inventory ~ b . ? •~::!~ ... BIOSEARCH •::• LIFE October 23, 2018 Office of Food Additive Safety (HFS-200) Center for Food Safety and Applied Nutrition, Food and Drug Administration 5001 Campus Drive College Park - MD 20740 USA Dear Office of Food Additive Safety, Please accept these documents as submission for Generally Recognized as Safe (GRAS) evaluation of the probiotic, Lactobacillus fermentum CECT57 I 6, according to the Final Rule 21 CFR Parts 20, 25, 170, 184, 186 and 570. Do not hesitate to contact me for further clarification or to request additional i. Thank you for your time. BiOSEARCH, S .A C I F A - 18550111 Camino de Purchil, n° 66 18004 GRANADA OCT 2 6 2018 Laura Macho Valls Regulatory Affairs Manager OFFICE OF Biosearch Life. FOOD ADDITIVE SAFETY IIJOS~ARCH S.A. • Camino de Purcl'lil, 66 • 18004 GRANADA (Spain) • Tlfno: {+34) 958240152 • Fax: (+34) 958240160 • lnfo~ b1osearchlile.com • 28031 Madnd (Spa,n) • Tlrno: (•34) 913 802 973 • Fax: (•34) 913 802 279 • sales(a1biosearchlife.com inscr,ta en el Registro Mercantil de Granada. T. 914, F. 164, seccl6n 8, H GR-17202. Fecha 13-11-2000. • CIF es A-185S0111 blOSHl'Chllle.com GRAS ASSESSMENT Lactobacillus fermentum CECT5716 Version 1 ... •~::~~ BIOSEARCH 1 •••·- LIFE Madrid, 23 rd October 2018. OCT 2 6 2018 OFFICE OF FOOD ADDITIVE SAFETY I .-:~~~ BIOSEARCH •::• LIFE Content Part 1. Signed statements and certification ......................................................... 4 I. I GRAS notice accordi ng to 2 1 CFR § 170.225 ........... .. .. .... ..... .. ............ .. .. .................................... .. ..... ... ..... .. ... .. .4 1.2 ame and address of notifier. -
Levels of Firmicutes, Actinobacteria Phyla and Lactobacillaceae
agriculture Article Levels of Firmicutes, Actinobacteria Phyla and Lactobacillaceae Family on the Skin Surface of Broiler Chickens (Ross 308) Depending on the Nutritional Supplement and the Housing Conditions Paulina Cholewi ´nska 1,* , Marta Michalak 2, Konrad Wojnarowski 1 , Szymon Skowera 1, Jakub Smoli ´nski 1 and Katarzyna Czyz˙ 1 1 Institute of Animal Breeding, Wroclaw University of Environmental and Life Sciences, 51-630 Wroclaw, Poland; [email protected] (K.W.); [email protected] (S.S.); [email protected] (J.S.); [email protected] (K.C.) 2 Department of Animal Nutrition and Feed Management, Wroclaw University of Environmental and Life Sciences, 51-630 Wroclaw, Poland; [email protected] * Correspondence: [email protected] Abstract: The microbiome of animals, both in the digestive tract and in the skin, plays an important role in protecting the host. The skin is one of the largest surface organs for animals; therefore, the destabilization of the microbiota on its surface can increase the risk of diseases that may adversely af- fect animals’ health and production rates, including poultry. The aim of this study was to evaluate the Citation: Cholewi´nska,P.; Michalak, effect of nutritional supplementation in the form of fermented rapeseed meal and housing conditions M.; Wojnarowski, K.; Skowera, S.; on the level of selected bacteria phyla (Firmicutes, Actinobacteria, and family Lactobacillaceae). The Smoli´nski,J.; Czyz,˙ K. Levels of study was performed on 30 specimens of broiler chickens (Ross 308), individually kept in metabolic Firmicutes, Actinobacteria Phyla and cages for 36 days. They were divided into 5 groups depending on the feed received. -
Obesity-Associated Gut Microbiota Is Enriched in Lactobacillus Reuteri and Depleted in Bifidobacterium Animalis and Methanobrevibacter Smithii
International Journal of Obesity (2012) 36, 817–825 & 2012 Macmillan Publishers Limited All rights reserved 0307-0565/12 www.nature.com/ijo ORIGINAL ARTICLE Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii M Million1, M Maraninchi2, M Henry1, F Armougom1, H Richet1, P Carrieri3,4,5, R Valero2,DRaccah6, B Vialettes2 and D Raoult1 1URMITE -CNRS UMR 6236 IRD 198, IFR 48, Faculte´ de Me´decine, Universite´ de la Me´diterrane´e, Marseille, France; 2Service de Nutrition, Maladies Me´taboliques et Endocrinologie, UMR-INRA U1260, CHU de la Timone, Marseille, France; 3INSERM, U912(SE4S), Marseille, France; 4Universite´ Aix Marseille, IRD, UMR-S912, Marseille, France; 5ORS PACA, Observatoire Re´gional de la Sante´ Provence Alpes Coˆte d’Azur, Marseille, France and 6Service de Nutrition et Diabe´tologie, CHU Sainte Marguerite, Marseille, France Background: Obesity is associated with increased health risk and has been associated with alterations in bacterial gut microbiota, with mainly a reduction in Bacteroidetes, but few data exist at the genus and species level. It has been reported that the Lactobacillus and Bifidobacterium genus representatives may have a critical role in weight regulation as an anti-obesity effect in experimental models and humans, or as a growth-promoter effect in agriculture depending on the strains. Objectives and methods: To confirm reported gut alterations and test whether Lactobacillus or Bifidobacterium species found in the human gut are associated with obesity or lean status, we analyzed the stools of 68 obese and 47 controls targeting Firmicutes, Bacteroidetes, Methanobrevibacter smithii, Lactococcus lactis, Bifidobacterium animalis and seven species of Lactobacillus by quantitative PCR (qPCR) and culture on a Lactobacillus-selective medium. -
Lactobacillus Fermentum Dr.Sudeepa E.S, Bhavini K Dept
Vol-6 Issue-3 2020 IJARIIE-ISSN(O)-2395-4396 REVIEW ON Lactobacillus fermentum Dr.Sudeepa E.S, Bhavini K Dept. of Biotechnology, Nehru Arts and Science College, Coimbatore ABSTRACT Milk and other dairy products are considered as the most abundant sources of LAB (Lactic Acid Bacteria), which is also a member of the gut micro biota of man.The genus Lactobacillus consists of a diverse group of rod-shaped, Gram-positive, non-spore forming, non-pigmented, catalase negative and microaerophilic to strictly anaerobic organisms. Lactobacillus fermentumis a gram positive rod shaped bacterium and a heterofermentative organism, found abundantly in fermented food and vegetables. It is catalase negative and exhibits various enzymatic, amylase and antimicrobial activities. The bacterium also produces bacteriocins, which are peptides that can act as food preservatives as well as substitute to antibiotics.The main aim of this review article is to study, analyse and interpret various information on Lactobacillus fermentumhighlighting its sources, isolation and characterisation methodology, its potential in fermentation and the possible applications of the same in various sectors. KEYWORDS:-Lactobacillus fermentum, Heterofermentative bacteria, probiotics, Exopolysaccharide, Bacteriocin INTRODUCTION Lactobacillus fermentum, a rod shaped, gram positive bacteria, categorised as an obligateheterofermentative bacteria[17], is a major species of the human gut and can easily survive in the harsh environment of the animal stomach and intestinal tract.Its coloniesgrow well at 45°C but not at 15°C[6]. The Lactobacillus fermentumrods are of variable length. It is a catalase negative, non-motile and non-sporing organism. Lactobacillus fermentum uses several carbohydrates such as arabinose, cellobiose, galactose, maltose, mannose, melibiose, raffinose, ribose, sucrose, trehalose, and xylose[19], but fermentation is strain dependent. -
A Taxonomic Note on the Genus Lactobacillus
TAXONOMIC DESCRIPTION Zheng et al., Int. J. Syst. Evol. Microbiol. DOI 10.1099/ijsem.0.004107 A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae Jinshui Zheng1†, Stijn Wittouck2†, Elisa Salvetti3†, Charles M.A.P. Franz4, Hugh M.B. Harris5, Paola Mattarelli6, Paul W. O’Toole5, Bruno Pot7, Peter Vandamme8, Jens Walter9,10, Koichi Watanabe11,12, Sander Wuyts2, Giovanna E. Felis3,*,†, Michael G. Gänzle9,13,*,† and Sarah Lebeer2† Abstract The genus Lactobacillus comprises 261 species (at March 2020) that are extremely diverse at phenotypic, ecological and gen- otypic levels. This study evaluated the taxonomy of Lactobacillaceae and Leuconostocaceae on the basis of whole genome sequences. Parameters that were evaluated included core genome phylogeny, (conserved) pairwise average amino acid identity, clade- specific signature genes, physiological criteria and the ecology of the organisms. Based on this polyphasic approach, we propose reclassification of the genus Lactobacillus into 25 genera including the emended genus Lactobacillus, which includes host- adapted organisms that have been referred to as the Lactobacillus delbrueckii group, Paralactobacillus and 23 novel genera for which the names Holzapfelia, Amylolactobacillus, Bombilactobacillus, Companilactobacillus, Lapidilactobacillus, Agrilactobacil- lus, Schleiferilactobacillus, Loigolactobacilus, Lacticaseibacillus, Latilactobacillus, Dellaglioa, -
Molecular Characterisation and Biomass and Metabolite Production of Lactobacillus Reuteri Lpb P01-001: a Potential Probiotic
Brazilian Journal of Microbiology (2012): 135-147 ISSN 1517-8382 MOLECULAR CHARACTERISATION AND BIOMASS AND METABOLITE PRODUCTION OF LACTOBACILLUS REUTERI LPB P01-001: A POTENTIAL PROBIOTIC Elizete de F. R. Pancheniak1, Maike T. Maziero1, José A. Rodriguez-León2 , José L. Parada2, Michele R. Spier2, Carlos R. Soccol2* 1Programa de Pós-Graduação em Tecnologia de Alimentos, Universidade Federal do Paraná, Curitiba, PR, Brasil; 2Departamento Engenharia de Bioprocessos e Biotecnologia, Universidade Federal do Paraná, Curitiba, PR, Brasil. Submitted: July 17, 2010; Returned to authors for corrections: June 22, 2011; Approved: January 16, 2012. ABSTRACT Lactobacillus reuteri LPB P01-001 was isolated from the gastrointestinal tract of wild swine and was characterised by biochemical testing and sequencing of gene 16S rRNA. A simple and low-cost culture medium based on cane sugar (2.5% p/v) and yeast extract (1% p/v) was used in the production of this probiotic. The fermentative conditions were a) pH control at 6.5 and b) no pH control; both were set at 37°C in a 12 L slightly stirred tank bioreactor. Fermentation parameters such as the specific growth rate, productivity and yield of biomass, lactic and acetic acid levels were determined. L. reuteri LPB P01-001 behaves as an aciduric bacteria because it grows better in a low pH medium without pH control. However, the lactic acid production yield was practically half (9.22 g.L-1) of that obtained under a constant pH of 6.5, which reached 30.5 g.L-1 after 28 hours of fermentation. The acetic acid production was also higher under pH-controlled fermentation, reaching 10.09 g.L-1 after 28 hours of fermentation. -
Lactobacillus Fermentum Cect 7472 Strain with Probiotic Properties
(19) TZZ Z_T (11) EP 2 707 476 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: C12N 1/20 (2006.01) A23L 1/03 (2006.01) 08.07.2015 Bulletin 2015/28 A61K 35/74 (2015.01) C12R 1/225 (2006.01) (21) Application number: 12718244.2 (86) International application number: PCT/EP2012/058214 (22) Date of filing: 04.05.2012 (87) International publication number: WO 2012/152680 (15.11.2012 Gazette 2012/46) (54) LACTOBACILLUS FERMENTUM CECT 7472 STRAIN WITH PROBIOTIC PROPERTIES STAMM VOM LACTOBACILLUS FERMENTUM CECT 7472 MIT PROBIOTISCHEN EIGENSCHAFTEN SOUCHE DE LACTOBACILLUS FERMENTUM CECT 7472 AYANT DES PROPRIÉTÉS PROBIOTIQUES (84) Designated Contracting States: • RUIZ BRAVO LÓPEZ, Alfonso AL AT BE BG CH CY CZ DE DK EE ES FI FR GB E-18150 Gojar (ES) GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR (74) Representative: Carvajal y Urquijo, Isabel et al Clarke, Modet & Co. (30) Priority: 06.05.2011 EP 11382132 Suero de Quiñones, 34-36 28002 Madrid (ES) (43) Date of publication of application: 19.03.2014 Bulletin 2014/12 (56) References cited: • BAO: "Screening of potential properties of (73) Proprietors: Lactobacillus fermentum isolated from • Biotmicrogen, S.L. traditionaldairy products", FOOD CONTROL, vol. 18100 Armilla (ES) 21, 2010, pages 695-701, XP026835977, cited in • Cajamar Caja Rural, Sociedad Cooperativa the application De Crédito • MOJGANI NAHEED ET AL: "Screening of locally 04006 Almería (ES) isolated lactic acid bacteria for use as probiotics • Sociedad Cooperativa Andaluza la in poultry in Iran", JOURNAL OF POULTRY Pastora de Taberno SCIENCE, vol.