Polycystin-1: a Master Regulator of Intersecting Cystic Pathways
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Examples of Amino Acid Changes in Notothenioids Methods To
Supplementary Information S1 Candidate genes: examples of amino acid changes in notothenioids Methods To evaluate notothenioid amino acid changes in a cross‐section of genes, six candidates from a range of functional categories of interest were chosen for a more detailed examination. The selected genes comprised small, well‐characterised genes present in multiple fish species (mainly teleosts, but in some cases these analyses were extended to the Actinopterygii when sequences from the spotted gar (Lepisosteus oculatus) were available) and available in at least two notothenioids. The amino acid composition of a series of six candidate genes were further analysed in depth at the amino acid sequence level. These genes were superoxide dismutase 1 (SOD1), neuroglobin, dihydrofolate reductase (both paralogues), p53 and calmodulin. Clustal X alignments were constructed from orthologues identified in the four Notothenioid transcriptomes along with other fish orthologues extracted from either SwissProt (Bateman et al., 2017) or Ensembl release 91 (Aken et al., 2017). Alignment data were visualised and annotated in BoxShade version 3.21 (https://embnet.vital‐ it.ch/software/BOX_form.html). Notothenioid‐specific changes were noted and the type of substitution in terms of amino acid properties was noted. Results A range of amino acid changes were revealed, from virtually complete conservation between the notothenioids and other fish (calmodulin), to one amino acid substitution present in neuroglobin and SOD1, to more extensive changes in dihydrofolate reductase, dihydrofolate reductase‐like and p53. In the case of the latter three genes, notothenioid‐specific changes were at positions that were often highly variable in temperate fish species with up to six different amino acid substitutions and did not result in a definable pattern of directional substitution. -
Educational Paper Ciliopathies
Eur J Pediatr (2012) 171:1285–1300 DOI 10.1007/s00431-011-1553-z REVIEW Educational paper Ciliopathies Carsten Bergmann Received: 11 June 2011 /Accepted: 3 August 2011 /Published online: 7 September 2011 # The Author(s) 2011. This article is published with open access at Springerlink.com Abstract Cilia are antenna-like organelles found on the (NPHP) . Ivemark syndrome . Meckel syndrome (MKS) . surface of most cells. They transduce molecular signals Joubert syndrome (JBTS) . Bardet–Biedl syndrome (BBS) . and facilitate interactions between cells and their Alstrom syndrome . Short-rib polydactyly syndromes . environment. Ciliary dysfunction has been shown to Jeune syndrome (ATD) . Ellis-van Crefeld syndrome (EVC) . underlie a broad range of overlapping, clinically and Sensenbrenner syndrome . Primary ciliary dyskinesia genetically heterogeneous phenotypes, collectively (Kartagener syndrome) . von Hippel-Lindau (VHL) . termed ciliopathies. Literally, all organs can be affected. Tuberous sclerosis (TSC) . Oligogenic inheritance . Modifier. Frequent cilia-related manifestations are (poly)cystic Mutational load kidney disease, retinal degeneration, situs inversus, cardiac defects, polydactyly, other skeletal abnormalities, and defects of the central and peripheral nervous Introduction system, occurring either isolated or as part of syn- dromes. Characterization of ciliopathies and the decisive Defective cellular organelles such as mitochondria, perox- role of primary cilia in signal transduction and cell isomes, and lysosomes are well-known -
Synergistic Genetic Interactions Between Pkhd1 and Pkd1 Result in an ARPKD-Like Phenotype in Murine Models
BASIC RESEARCH www.jasn.org Synergistic Genetic Interactions between Pkhd1 and Pkd1 Result in an ARPKD-Like Phenotype in Murine Models Rory J. Olson,1 Katharina Hopp ,2 Harrison Wells,3 Jessica M. Smith,3 Jessica Furtado,1,4 Megan M. Constans,3 Diana L. Escobar,3 Aron M. Geurts,5 Vicente E. Torres,3 and Peter C. Harris 1,3 Due to the number of contributing authors, the affiliations are listed at the end of this article. ABSTRACT Background Autosomal recessive polycystic kidney disease (ARPKD) and autosomal dominant polycystic kidney disease (ADPKD) are genetically distinct, with ADPKD usually caused by the genes PKD1 or PKD2 (encoding polycystin-1 and polycystin-2, respectively) and ARPKD caused by PKHD1 (encoding fibrocys- tin/polyductin [FPC]). Primary cilia have been considered central to PKD pathogenesis due to protein localization and common cystic phenotypes in syndromic ciliopathies, but their relevance is questioned in the simple PKDs. ARPKD’s mild phenotype in murine models versus in humans has hampered investi- gating its pathogenesis. Methods To study the interaction between Pkhd1 and Pkd1, including dosage effects on the phenotype, we generated digenic mouse and rat models and characterized and compared digenic, monogenic, and wild-type phenotypes. Results The genetic interaction was synergistic in both species, with digenic animals exhibiting pheno- types of rapidly progressive PKD and early lethality resembling classic ARPKD. Genetic interaction be- tween Pkhd1 and Pkd1 depended on dosage in the digenic murine models, with no significant enhancement of the monogenic phenotype until a threshold of reduced expression at the second locus was breached. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Ursodeoxycholic Acid in Advanced Polycystic Liver Disease: a Phase 2 Multicenter Randomized Controlled Trial
Research Article Ursodeoxycholic acid in advanced polycystic liver disease: A phase 2 multicenter randomized controlled trial Hedwig M.A. D’Agnolo1, Wietske Kievit2, R. Bart Takkenberg3, Ioana Riaño4, Luis Bujanda4, ⇑ Myrte K. Neijenhuis1, Ellen J.L. Brunenberg5, Ulrich Beuers3, Jesus M. Banales4, Joost P.H. Drenth1, 1Department of Gastroenterology and Hepatology, Radboud University Medical Center, Nijmegen, The Netherlands; 2Radboud University Medical Center, Radboud Institute for Health Sciences, Nijmegen, The Netherlands; 3Department of Gastroenterology and Hepatology, Amsterdam Medical Center, Amsterdam, The Netherlands; 4Department of Liver and Gastrointestinal Diseases, Biodonostia Research Institute – Donostia University Hospital, University of the Basque Country (UPV/EHU), IKERBASQUE, CIBERehd, San Sebastián, Spain; 5Department of Radiation Oncology, Radboud University Medical Center, Nijmegen, The Netherlands Background & Aims: Ursodeoxycholic acid (UDCA) inhibits pro- (p = 0.493). LCV was not different after 24 weeks between con- liferation of polycystic human cholangiocytes in vitro and hepatic trols and UDCA treated patients (p = 0.848). However, UDCA cystogenesis in a rat model of polycystic liver disease (PLD) inhibited LCV growth in ADPKD patients compared to ADPKD in vivo. Our aim was to test whether UDCA may beneficially affect controls (p = 0.049). liver volume in patients with advanced PLD. Conclusions: UDCA administration for 24 weeks did not reduce Methods: We conducted an international, multicenter, random- TLV in advanced PLD, but UDCA reduced LCV growth in ADPKD ized controlled trial in symptomatic PLD patients from three ter- patients. Future studies might explore whether ADPKD and tiary referral centers. Patients with PLD and total liver volume ADPLD patients respond differently to UDCA treatment. (TLV) P2500 ml were randomly assigned to UDCA treatment Lay summary: Current therapies for polycystic liver disease are (15–20 mg/kg/day) for 24 weeks, or to no treatment. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Article Pansomatostatin Agonist Pasireotide Long-Acting Release
CJASN ePress. Published on August 25, 2020 as doi: 10.2215/CJN.13661119 Article Pansomatostatin Agonist Pasireotide Long-Acting Release for Patients with Autosomal Dominant Polycystic Kidney or Liver Disease with Severe Liver Involvement A Randomized Clinical Trial 1Division of Nephrology and 1 1 2 1 1 1 Marie C. Hogan , Julie A. Chamberlin, Lisa E. Vaughan, Angela L. Waits, Carly Banks, Kathleen Leistikow, Hypertension, Mayo Troy Oftsie,1 Chuck Madsen,1 Marie Edwards,1,3 James Glockner,4 Walter K. Kremers,2 Peter C. Harris,1 Clinic College of Nicholas F. LaRusso,5 Vicente E. Torres ,1 and Tatyana V. Masyuk5 Medicine, Rochester, Minnesota 2Division of Abstract Biomedical Statistics Background and objectives We assessed safety and efficacy of another somatostatin receptor analog, pasireotide and Informatics, Mayo long-acting release, in severe polycystic liver disease and autosomal dominant polycystic kidney disease. Clinic College of Pasireotide long-acting release, with its broader binding profile and higher affinity to known somatostatin Medicine, Rochester, fi Minnesota receptors, has potential for greater ef cacy. 3Biomedical Imaging Research Core Facility, Design, setting, participants, & measurements Individuals with severe polycystic liver disease were assigned in a PKD Translational 2:1 ratio in a 1-year, double-blind, randomized trial to receive pasireotide long-acting release or placebo. Primary Research Center, Mayo Clinic College of outcome was change in total liver volume; secondary outcomes were change in total kidney volume, eGFR, and Medicine, Rochester, quality of life. Minnesota 4Department of Results Of 48 subjects randomized, 41 completed total liver volume measurements (n529 pasireotide long-acting Radiology, Mayo release and n512 placebo). -
Jimmunol.1701087.Full.Pdf
A Novel Pkhd1 Mutation Interacts with the Nonobese Diabetic Genetic Background To Cause Autoimmune Cholangitis This information is current as Wenting Huang, Daniel B. Rainbow, Yuehong Wu, David of September 28, 2021. Adams, Pranavkumar Shivakumar, Leah Kottyan, Rebekah Karns, Bruce Aronow, Jorge Bezerra, M. Eric Gershwin, Laurence B. Peterson, Linda S. Wicker and William M. Ridgway J Immunol published online 20 November 2017 Downloaded from http://www.jimmunol.org/content/early/2017/11/23/jimmun ol.1701087 Supplementary http://www.jimmunol.org/content/suppl/2017/11/20/jimmunol.170108 http://www.jimmunol.org/ Material 7.DCSupplemental Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists by guest on September 28, 2021 • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2017 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Published November 27, 2017, doi:10.4049/jimmunol.1701087 The Journal of Immunology ANovelPkhd1 Mutation Interacts with the Nonobese Diabetic Genetic Background To Cause Autoimmune Cholangitis Wenting Huang,*,1 Daniel B. Rainbow,†,1 Yuehong Wu,* David Adams,* Pranavkumar Shivakumar,‡ Leah Kottyan,x Rebekah Karns,{ Bruce Aronow,{ Jorge Bezerra,‡ M. -
Missense Mutation in Sterile Motif of Novel Protein Samcystin Is
Missense Mutation in Sterile ␣ Motif of Novel Protein SamCystin is Associated with Polycystic Kidney Disease in (cy/؉) Rat Joanna H. Brown,* Marie-The´re`se Bihoreau,* Sigrid Hoffmann,† Bettina Kra¨nzlin,† Iulia Tychinskaya,† Nicholas Obermu¨ ller,‡ Dirk Podlich,† Suzanne N. Boehn,† Pamela J. Kaisaki,* Natalia Megel,† Patrick Danoy,§ Richard R. Copley,* John Broxholme,* ʈ Ralph Witzgall, Mark Lathrop,§ Norbert Gretz,† and Dominique Gauguier* *The Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom; †Medical Research Centre, Klinikum Mannheim, University of Heidelberg, Mannheim, Germany; ‡Division of Nephrology, Medical Clinic ʈ III, University of Frankfurt, Frankfurt, Germany; §Centre National de Ge´notypage, Evry, France; and Institute for Molecular and Cellular Anatomy, University of Regensburg, Regensburg, Germany Autosomal dominant polycystic kidney disease (PKD) is the most common genetic disease that leads to kidney failure in humans. In addition to the known causative genes PKD1 and PKD2, there are mutations that result in cystic changes in the kidney, such as nephronophthisis, autosomal recessive polycystic kidney disease, or medullary cystic kidney disease. Recent efforts to improve the understanding of renal cystogenesis have been greatly enhanced by studies in rodent models of PKD. Genetic studies in the (cy/؉) rat showed that PKD spontaneously develops as a consequence of a mutation in a gene different from the rat orthologs of PKD1 and PKD2 or other genes that are known to be involved in human cystic kidney diseases. This article reports the positional cloning and mutation analysis of the rat PKD gene, which revealedaCtoTtransition that replaces an arginine by a tryptophan at amino acid 823 in the protein sequence. -
Cryo-EM Structure of the Polycystic Kidney Disease-Like Channel PKD2L1
ARTICLE DOI: 10.1038/s41467-018-03606-0 OPEN Cryo-EM structure of the polycystic kidney disease-like channel PKD2L1 Qiang Su1,2,3, Feizhuo Hu1,3,4, Yuxia Liu4,5,6,7, Xiaofei Ge1,2, Changlin Mei8, Shengqiang Yu8, Aiwen Shen8, Qiang Zhou1,3,4,9, Chuangye Yan1,2,3,9, Jianlin Lei 1,2,3, Yanqing Zhang1,2,3,9, Xiaodong Liu2,4,5,6,7 & Tingliang Wang1,3,4,9 PKD2L1, also termed TRPP3 from the TRPP subfamily (polycystic TRP channels), is involved 1234567890():,; in the sour sensation and other pH-dependent processes. PKD2L1 is believed to be a non- selective cation channel that can be regulated by voltage, protons, and calcium. Despite its considerable importance, the molecular mechanisms underlying PKD2L1 regulations are largely unknown. Here, we determine the PKD2L1 atomic structure at 3.38 Å resolution by cryo-electron microscopy, whereby side chains of nearly all residues are assigned. Unlike its ortholog PKD2, the pore helix (PH) and transmembrane segment 6 (S6) of PKD2L1, which are involved in upper and lower-gate opening, adopt an open conformation. Structural comparisons of PKD2L1 with a PKD2-based homologous model indicate that the pore domain dilation is coupled to conformational changes of voltage-sensing domains (VSDs) via a series of π–π interactions, suggesting a potential PKD2L1 gating mechanism. 1 Ministry of Education Key Laboratory of Protein Science, Tsinghua University, Beijing 100084, China. 2 School of Life Sciences, Tsinghua University, Beijing 100084, China. 3 Beijing Advanced Innovation Center for Structural Biology, Tsinghua University, Beijing 100084, China. 4 School of Medicine, Tsinghua University, Beijing 100084, China. -
Instelling Naam Expertise Centrum Cluster Van / Specifieke Aandoening Toelichting Erkenning
Instelling Naam Expertise Centrum Cluster van / Specifieke aandoening Toelichting erkenning AMC Amsterdam Lysosome Center Gaucher disease ("Sphinx") Fabry disease Niemann-Pick disease type A Niemann-Pick disease type B Niemann-Pick disease type C Mucopolysaccharidosis type 1 Mucopolysaccharidosis type 3 Mucopolysaccharidosis type 4 Lysosomal Disease Cholesteryl ester storage disease AMC Dutch Centre for Peroxisomal Peroxisome biogenesis disorder-Zellweger syndrome spectrum disorders Disorder of peroxisomal alpha- - beta- and omega-oxidation Rhizomelic chondrodysplasia punctata Non-syndromic pontocerebellar hypoplasia AMC Expertise center Vascular medicine Homozygous familial hypercholesterolemia Familial lipoprotein lipase deficiency Tangier disease AMC Centre for Genetic Metabolic Disorder of galactose metabolism Diseases Amsterdam Disorder of phenylalanine metabolism AMC Centre for Neuromuscular Diseases Neuromuscular disease Motor neuron disease; amyotrophic lateral sclerosis, primary sclerosis and progressive muscular atrophy Idiopathic inflammatory myopathy, incl dermatomyositis, polymyositis, necrotizing autoimmune myopathy and inclusion body myositis Poliomyelitis Hereditary motor and sensory neuropathy Chronic inflammatory demyelinating polyneuropathy, incl. Guillain_Barre syndrome, CIDP, MMN AMC Centre for rare thyroid diseases Congenital hypothyroidism AMC Centre for gastroenteropancreatic Gastroenteropancreatic endocrine tumor neuroendocrine tumors AMC Centre for rare hypothalamic and Rare hypothalamic or pituitary disease pituitary -
Macromolecular Assembly of Polycystin-2 Intracytosolic C-Terminal Domain
Macromolecular assembly of polycystin-2 intracytosolic C-terminal domain Frederico M. Ferreiraa,b,1, Leandro C. Oliveirac, Gregory G. Germinod, José N. Onuchicc,1, and Luiz F. Onuchica,1 aDivision of Nephrology, University of São Paulo School of Medicine, 01246-903, São Paulo, Brazil; bLaboratory of Immunology, Heart Institute, University of São Paulo School of Medicine, 05403-900, São Paulo, Brazil; cCenter for Theoretical Biological Physics, University of California at San Diego, La Jolla, CA 92093; dNational Institute of Diabetes, Digestive, and Kidney Diseases, Bethesda, MD 20892-2560 Contributed by José N. Onuchic, April 28, 2011 (sent for review March 20, 2011) Mutations in PKD2 are responsible for approximately 15% of the In spite of the aforementioned information and insights, the autosomal dominant polycystic kidney disease cases. This gene macromolecular assembly of PC2t homooligomer continued to encodes polycystin-2, a calcium-permeable cation channel whose be an open question. In the current work, we present the most C-terminal intracytosolic tail (PC2t) plays an important role in its comprehensive set of analyses yet performed and that show interaction with a number of different proteins. In the present PC2t forms a homotetrameric oligomer. We have proposed a study, we have comprehensively evaluated the macromolecular PC2 C-terminal domain delimitation and submitted it to a range assembly of PC2t homooligomer using a series of biophysical of biochemical and biophysical evaluations, including chemical and biochemical analyses. Our studies, based on a new delimitation cross-linking, dynamic light scattering (DLS), circular dichroism of PC2t, have revealed that it is capable of assembling as a homo- (CD) and small angle X-ray scattering (SAXS) analyses.