TP63 and TP73 in Cancer, an Unresolved В€Œfamily∕ Puzzle Of
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Core Transcriptional Regulatory Circuitries in Cancer
Oncogene (2020) 39:6633–6646 https://doi.org/10.1038/s41388-020-01459-w REVIEW ARTICLE Core transcriptional regulatory circuitries in cancer 1 1,2,3 1 2 1,4,5 Ye Chen ● Liang Xu ● Ruby Yu-Tong Lin ● Markus Müschen ● H. Phillip Koeffler Received: 14 June 2020 / Revised: 30 August 2020 / Accepted: 4 September 2020 / Published online: 17 September 2020 © The Author(s) 2020. This article is published with open access Abstract Transcription factors (TFs) coordinate the on-and-off states of gene expression typically in a combinatorial fashion. Studies from embryonic stem cells and other cell types have revealed that a clique of self-regulated core TFs control cell identity and cell state. These core TFs form interconnected feed-forward transcriptional loops to establish and reinforce the cell-type- specific gene-expression program; the ensemble of core TFs and their regulatory loops constitutes core transcriptional regulatory circuitry (CRC). Here, we summarize recent progress in computational reconstitution and biologic exploration of CRCs across various human malignancies, and consolidate the strategy and methodology for CRC discovery. We also discuss the genetic basis and therapeutic vulnerability of CRC, and highlight new frontiers and future efforts for the study of CRC in cancer. Knowledge of CRC in cancer is fundamental to understanding cancer-specific transcriptional addiction, and should provide important insight to both pathobiology and therapeutics. 1234567890();,: 1234567890();,: Introduction genes. Till now, one critical goal in biology remains to understand the composition and hierarchy of transcriptional Transcriptional regulation is one of the fundamental mole- regulatory network in each specified cell type/lineage. -
Nuclear Localization of DP and E2F Transcription Factors by Heterodimeric Partners and Retinoblastoma Protein Family Members
Journal of Cell Science 109, 1717-1726 (1996) 1717 Printed in Great Britain © The Company of Biologists Limited 1996 JCS7086 Nuclear localization of DP and E2F transcription factors by heterodimeric partners and retinoblastoma protein family members Junji Magae1, Chin-Lee Wu2, Sharon Illenye1, Ed Harlow2 and Nicholas H. Heintz1,* 1Department of Pathology, University of Vermont, Burlington VT 05405, USA 2Massachusetts General Hospital Cancer Center, Charlestown MA 02129, USA *Author for correspondence SUMMARY E2F is a family of transcription factors implicated in the showed that regions of E2F-1 and DP-1 that are required regulation of genes required for progression through G1 for stable association of the two proteins were also required and entry into the S phase. The transcriptionally active for nuclear localization of DP-1. Unlike E2F-1, -2, and -3, forms of E2F are heterodimers composed of one polypep- E2F-4 did not accumulate in the nucleus unless it was coex- tide encoded by the E2F gene family and one polypeptide pressed with DP-2. p107 and p130, but not pRb, stimulated encoded by the DP gene family. The transcriptional activity nuclear localization of E2F-4, either alone or in combina- of E2F/DP heterodimers is influenced by association with tion with DP-2. These results indicate that DP proteins the members of the retinoblastoma tumor suppressor preferentially associate with specific E2F partners, and protein family (pRb, p107, and p130). Here the intracellu- suggest that the ability of specific E2F/DP heterodimers to lar distribution of E2F and DP proteins was investigated in localize in the nucleus contributes to the regulation of E2F transiently transfected Chinese hamster and human cells. -
TP63 Is Significantly Upregulated in Diabetic Kidney
International Journal of Molecular Sciences Article TP63 Is Significantly Upregulated in Diabetic Kidney Sitai Liang 1, Bijaya K. Nayak 1, Kristine S. Vogel 1 and Samy L. Habib 1,2,* 1 Department of Cell Systems and Anatomy, The University of Texas Health Science Center, San Antonio, TX 78229, USA; [email protected] (S.L.); [email protected] (B.K.N.); [email protected] (K.S.V.) 2 South Texas, Veterans Healthcare System, San Antonio, TX 78229, USA * Correspondence: [email protected]; Tel.: +1-21-0567-3816; Fax: +1-21-0567-3802 Abstract: The role of tumor protein 63 (TP63) in regulating insulin receptor substrate 1 (IRS-1) and other downstream signal proteins in diabetes has not been characterized. RNAs extracted from kidneys of diabetic mice (db/db) were sequenced to identify genes that are involved in kidney complications. RNA sequence analysis showed more than 4- to 6-fold increases in TP63 expression in the diabetic mice’s kidneys, compared to wild-type mice at age 10 and 12 months old. In addition, the kidneys from diabetic mice showed significant increases in TP63 mRNA and protein expression compared to WT mice. Mouse proximal tubular cells exposed to high glucose (HG) for 48 h showed significant decreases in IRS-1 expression and increases in TP63, compared to cells grown in normal glucose (NG). When TP63 was downregulated by siRNA, significant increases in IRS-1 and activation of AMP-activated protein kinase (AMPK (p-AMPK-Th172)) occurred under NG and HG conditions. Moreover, activation of AMPK by pretreating the cells with AICAR resulted in significant down- regulation of TP63 and increased IRS-1 expression. -
Expression Is a New Potential Biomarker for Adverse
www.nature.com/scientificreports OPEN Decreased MYC‑associated factor X (MAX) expression is a new potential biomarker for adverse prognosis in anaplastic large cell lymphoma Takahisa Yamashita1, Morihiro Higashi1, Shuji Momose1, Akiko Adachi2, Toshiki Watanabe3, Yuka Tanaka4, Michihide Tokuhira4, Masahiro Kizaki4 & Jun‑ichi Tamaru1* MYC-associated factor X (MAX) is a protein in the basic helix‑loop‑helix leucine zipper family, which is ubiquitously and constitutively expressed in various normal tissues and tumors. MAX protein mediates various cellular functions such as proliferation, diferentiation, and apoptosis through the MYC-MAX protein complex. Recently, it has been reported that MYC regulates the proliferation of anaplastic large cell lymphoma. However, the expression and function of MAX in anaplastic large cell lymphoma remain to be elucidated. We herein investigated MAX expression in anaplastic large cell lymphoma (ALCL) and peripheral T-cell lymphoma, not otherwise specifed (PTCL-NOS) and found 11 of 37 patients (30%) with ALCL lacked MAX expression, whereas 15 of 15 patients (100%) with PTCL-NOS expressed MAX protein. ALCL patients lacking MAX expression had a signifcantly inferior prognosis compared with patients having MAX expression. Moreover, patients without MAX expression signifcantly had histological non-common variants, which were mainly detected in aggressive ALCL cases. Immunohistochemical analysis showed that MAX expression was related to the expression of MYC and cytotoxic molecules. These fndings demonstrate that lack of MAX expression is a potential poor prognostic biomarker in ALCL and a candidate marker for diferential diagnosis of ALCL and PTCL‑noS. Anaplastic large cell lymphoma (ALCL) is an aggressive mature T-cell lymphoma that usually expresses the lymphocyte activation marker CD30 and ofen lacks expression of T-cell antigens, such as CD3, CD5, and CD71. -
AP-1 in Cell Proliferation and Survival
Oncogene (2001) 20, 2390 ± 2400 ã 2001 Nature Publishing Group All rights reserved 0950 ± 9232/01 $15.00 www.nature.com/onc AP-1 in cell proliferation and survival Eitan Shaulian1 and Michael Karin*,1 1Laboratory of Gene Regulation and Signal Transduction, Department of Pharmacology, University of California San Diego, 9500 Gilman Drive, La Jolla, California, CA 92093-0636, USA A plethora of physiological and pathological stimuli extensively discussed previously (Angel and Karin, induce and activate a group of DNA binding proteins 1991; Karin, 1995). that form AP-1 dimers. These proteins include the Jun, The mammalian AP-1 proteins are homodimers and Fos and ATF subgroups of transcription factors. Recent heterodimers composed of basic region-leucine zipper studies using cells and mice de®cient in individual AP-1 (bZIP) proteins that belong to the Jun (c-Jun, JunB proteins have begun to shed light on their physiological and JunD), Fos (c-Fos, FosB, Fra-1 and Fra-2), Jun functions in the control of cell proliferation, neoplastic dimerization partners (JDP1 and JDP2) and the closely transformation and apoptosis. Above all such studies related activating transcription factors (ATF2, LRF1/ have identi®ed some of the target genes that mediate the ATF3 and B-ATF) subfamilies (reviewed by (Angel eects of AP-1 proteins on cell proliferation and death. and Karin, 1991; Aronheim et al., 1997; Karin et al., There is evidence that AP-1 proteins, mostly those that 1997; Liebermann et al., 1998; Wisdom, 1999). In belong to the Jun group, control cell life and death addition, some of the Maf proteins (v-Maf, c-Maf and through their ability to regulate the expression and Nrl) can heterodimerize with c-Jun or c-Fos (Nishiza- function of cell cycle regulators such as Cyclin D1, p53, wa et al., 1989; Swaroop et al., 1992), whereas other p21cip1/waf1, p19ARF and p16. -
Targeting the RB-E2F Pathway in Breast Cancer
Oncogene (2016) 35, 4829–4835 © 2016 Macmillan Publishers Limited, part of Springer Nature. All rights reserved 0950-9232/16 www.nature.com/onc REVIEW Targeting the RB-E2F pathway in breast cancer J Johnson1, B Thijssen1, U McDermott2, M Garnett2, LFA Wessels1 and R Bernards1 Mutations of the retinoblastoma tumor-suppressor gene (RB1) or components regulating the CDK-RB-E2F pathway have been identified in nearly every human malignancy. Re-establishing cell cycle control through cyclin-dependent kinase (CDK) inhibition has therefore emerged as an attractive option in the development of targeted cancer therapy. The most successful example of this today is the use of the CDK4/6 inhibitor palbociclib combined with aromatase inhibitors for the treatment of estrogen receptor- positive breast cancers. Multiple studies have demonstrated that the CDK-RB-E2F pathway is critical for the control of cell proliferation. More recently, studies have highlighted additional roles of this pathway, especially E2F transcription factors themselves, in tumor progression, angiogenesis and metastasis. Specific E2Fs also have prognostic value in breast cancer, independent of clinical parameters. We discuss here recent advances in understanding of the RB-E2F pathway in breast cancer. We also discuss the application of genome-wide genetic screening efforts to gain insight into synthetic lethal interactions of CDK4/6 inhibitors in breast cancer for the development of more effective combination therapies. Oncogene (2016) 35, 4829–4835; doi:10.1038/onc.2016.32; published online 29 February 2016 INTRODUCTION multi-subunit protein complex containing partner (DP), RB-like, To maintain genome integrity, the mammalian cell cycle must be E2F and MuvB (DREAM) represses most if not all cell cycle gene 6 stringently regulated. -
Dialogue Between Estrogen Receptor and E2F Signaling Pathways: the Transcriptional Coregulator RIP140 at the Crossroads*
Advances in Bioscience and Biotechnology, 2013, 4, 45-54 ABB http://dx.doi.org/10.4236/abb.2013.410A3006 Published Online October 2013 (http://www.scirp.org/journal/abb/) Dialogue between estrogen receptor and E2F signaling pathways: The transcriptional coregulator RIP140 at the * crossroads Marion Lapierre1,2,3,4, Aurélie Docquier1,2,3,4, Audrey Castet-Nicolas1,2,3,4, Stéphan Jalaguier1,2,3,4, Catherine Teyssier1,2,3,4, Patrick Augereau1,2,3,4, Vincent Cavaillès1,2,3,4 1IRCM—Institut de Recherche en Cancérologie de Montpellier, Montpellier, France 2INSERM, U896, Montpellier, France 3Université Montpellier1, Montpellier, France 4Institut Régional du Cancer Montpellier, Montpellier, France Email: [email protected] Received 25 July 2013; revised 25 August 2013; accepted 19 September 2013 Copyright © 2013 Marion Lapierre et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ABSTRACT Estrogen Receptors; Gene Expression; Cell Proliferation; Breast Cancer; Endocrine Therapies Estrogen receptors and E2F transcription factors are the key players of two nuclear signaling pathways which exert a major role in oncogenesis, particularly 1. ESTROGEN RECEPTOR AND E2F in the mammary gland. Different levels of dialogue SIGNALING PATHWAYS between these two pathways have been deciphered 1.1. Estrogen Signaling in Breast Cancer Cells and deregulation of the E2F pathway has been shown to impact the response of breast cancer cells to endo- Estrogens are steroid hormones that regulate growth and crine therapies. The present review focuses on the differentiation of a large number of target tissues such as transcriptional coregulator RIP140/NRIP1 which is the mammary gland, the reproductive tract and skeletal involved in several regulatory feed-back loops and and cardiovascular systems [1]. -
TP63 Antibody Product Type
PRODUCT INFORMATION Product name:TP63 antibody Product type: Primary antibodies Description: Rabbit polyclonal to TP63 Immunogen:3 synthetic peptides (human) conjugated to KLH Reacts with: Human, Mouse Tested applications: ELISA, WB and IF GENE INFORMATION Gene Symbol:TP63 Gene Name:tumor protein p63 Ensembl ID:ENSG00000073282 Entrez GeneID:8626 GenBank Accession number:AB010153 Omim ID:603273 SwissProt:Q9H3D4 Molecular weight of TP63: 76.7kDa Function:Acts as a sequence specific DNA binding transcriptional activator or repressor. The isoforms contain a varying set of transactivation and autoregulating transactivation inhibiting domains thus showing an isoform specific activity. May be required in conjunction with TP73/p73 for initiation of p53/TP53 dependent apoptosis in response to genotoxic insults and the presence of activated oncogenes. Involved in Notch signaling by probably inducing JAG1 and JAG2. Plays a role in the regulation of epithelial morphogenesis. The ratio of DeltaNtype and TA*type isoforms may govern the maintenance of epithelial stem cell compartments and regulate the initiation of epithelial stratification from the undifferentiated embryonal ectoderm. Required for limb formation from the apical ectodermal ridge Expected subcellular localization:Nucleus Summary:This gene encodes a member of the p53 family of transcription factors. An animal model, p63 / mice, has been useful in defining the role this protein plays in the development and maintenance of stratified epithelial tissues. p63 / mice have several developmental defects which include the lack of limbs and other tissues, such as teeth and mammary glands, which develop as a result of interactions between mesenchyme and epithelium. Mutations in this gene are associated with ectodermal dysplasia, and cleft lip/palate syndrome 3 (EEC3); splithand/foot malformation 4 (SHFM4); ankyloblepharon ectodermal defectscleft lip/palate; ADULT syndrome (acrodermatounguallacrimal tooth); limbmammary syndrome; RapHodgkin syndrome (RHS); and orofacial cleft 8. -
The Regulation of Hydroxysteroid 17Β-Dehydrogenase Type 1 and 2
www.impactjournals.com/oncotarget/ Oncotarget, 2017, Vol. 8, (No. 37), pp: 62183-62194 Research Paper The regulation of hydroxysteroid 17β-dehydrogenase type 1 and 2 gene expression in breast cancer cell lines by estradiol, dihydrotestosterone, microRNAs, and genes related to breast cancer Erik Hilborn1, Olle Stål1, Andrey Alexeyenko2,3 and Agneta Jansson1 1Department of Clinical and Experimental Medicine and Department of Oncology, Faculty of Health Sciences, Linköping University, Linköping, Sweden 2Department of Microbiology, Tumor and Cell Biology (MTC), Karolinska Institutet, Stockholm, Sweden 3National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Solna, Sweden Correspondence to: Erik Hilborn, email: [email protected] Keywords: breast cancer, HSD17B1, HSD17B2, miRNA Received: September 23, 2016 Accepted: June 01, 2017 Published: July 10, 2017 Copyright: Hilborn et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ABSTRACT Aim: To investigate the influence of estrogen, androgen, microRNAs, and genes implicated in breast cancer on the expression of HSD17B1 and HSD17B2. Materials: Breast cancer cell lines ZR-75-1, MCF7, T47D, SK-BR-3, and the immortalized epithelial cell line MCF10A were used. Cells were treated either with estradiol or dihydrotestosterone for 6, 24, 48 hours, or 7 days or treated with miRNAs or siRNAs predicted to influence HSD17B expression. Results and discussion: Estradiol treatment decreased HSD17B1 expression and had a time-dependent effect on HSD17B2 expression. This effect was lost in estrogen receptor-α down-regulated or negative cell lines. -
Dissecting the DNA Binding Landscape and Gene Regulatory Network of P63 and P53
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.11.145540; this version posted June 12, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Dissecting the DNA binding landscape and gene regulatory network of p63 and p53 Konstantin Riege1, Helene Kretzmer2, Simon S. McDade3, Steve Hoffmann1, Martin Fischer1,# 1 Computational Biology Group, Leibniz Institute on Aging – Fritz Lipmann Institute (FLI), Beutenbergstraße 11, 07745 Jena, Germany 2 Department of Genome Regulation, Max Planck Institute for Molecular Genetics, Ihnestraße 63-73, 14195 Berlin, Germany 3 Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, 97 Lisburn Road, Belfast BT9 7AE, UK Running title: p63 GRN vs p53 GRN #To whom correspondence should be addressed. Email: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2020.06.11.145540; this version posted June 12, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The transcription factor (TF) p53 is the best-known tumor suppressor, but its ancient sibling p63 (ΔNp63) is a master regulator of epidermis development and a key oncogenic driver in squamous cell carcinomas (SCC). Despite multiple gene expression studies becoming available in recent years, the limited overlap of reported p63-dependent genes has made it difficult to decipher the p63 gene regulatory network (GRN). -
P53 and E2f: Partners in Life and Death
REVIEWS p53 and E2f: partners in life and death Shirley Polager and Doron Ginsberg Abstract | During tumour development cells sustain mutations that disrupt normal mechanisms controlling proliferation. Remarkably, the Rb–E2f and MDM2–p53 pathways are both defective in most, if not all, human tumours, which underscores the crucial role of these pathways in regulating cell cycle progression and viability. A simple interpretation of the observation that both pathways are deregulated is that they function independently in the control of cell fate. However, a large body of evidence indicates that, in addition to their independent effects on cell fate, there is extensive crosstalk between these two pathways, and specifically between the transcription factors E2F1 and p53, which influences vital cellular decisions. This Review discusses the molecular mechanisms that underlie the intricate interactions between E2f and p53. Autophagy The tumour suppressor p53 is a transcription factor suppressor and have a pivotal role in controlling cell cycle A catabolic process involving that is activated in response to virtually all cancer- progression (FIG. 1b). Initially, studies revealed that E2fs the degradation of a cell’s own associated stress signals, including DNA damage determine the timely expression of many genes that components by the lysosomal and oncogene activation. Normally, the levels of p53 are required for entry into and progression through machinery. protein are low, owing to rapid ubiquitin-dependent S phase of the cell cycle. However, it has become clear degradation largely directed by the E3 ubiquitin ligase that transcriptional activation of S phase-associated MDM2, which is also a target of transcriptional regu- genes is only one facet of E2f activity: we now know lation by p53 (REF. -
Control of Cell Cycle Progression by C-Jun Is P53 Dependent
Downloaded from genesdev.cshlp.org on October 2, 2021 - Published by Cold Spring Harbor Laboratory Press Control of cell cycle progression by c-Jun is p53 dependent Martin Schreiber,1,4 Andrea Kolbus,2 Fabrice Piu,3,5 Axel Szabowski,2 Uta Mo¨hle-Steinlein,1 Jianmin Tian,3 Michael Karin,3 Peter Angel,2 and Erwin F. Wagner1,6 1Research Institute of Molecular Pathology (IMP), A-1030 Vienna, Austria; 2Deutsches Krebsforschungszentrum (DKFZ), Division of Signal Transduction and Growth Control, D-69120 Heidelberg, Germany; 3Department of Pharmacology, University of California at San Diego, La Jolla, California 92093-0636 USA The c-jun proto-oncogene encodes a component of the mitogen-inducible immediate–early transcription factor AP-1 and has been implicated as a positive regulator of cell proliferation and G1-to-S-phase progression. Here we report that fibroblasts derived from c-jun−/− mouse fetuses exhibit a severe proliferation defect and undergo a prolonged crisis before spontaneous immortalization. The cyclin D1- and cyclin E-dependent kinases (CDKs) and transcription factor E2F are poorly activated, resulting in inefficient G1-to-S-phase progression. Furthermore, the absence of c-Jun results in elevated expression of the tumor suppressor gene p53 and its target gene, the CDK inhibitor p21, whereas overexpression of c-Jun represses p53 and p21 expression and accelerates cell proliferation. Surprisingly, protein stabilization, the common mechanism of p53 regulation, is not involved in up-regulation of p53 in c-jun−/− fibroblasts. Rather, c-Jun regulates transcription of p53 negatively by direct binding to a variant AP-1 site in the p53 promoter.